Literature DB >> 21582698

Diaqua-bis(2-bromo-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)nickel(II).

Tuncer Hökelek, Filiz Yılmaz, Barış Tercan, F Elif Ozbek, Hacali Necefoğlu.   

Abstract

In the monomeric centrosymmetric title Ni(II) complex, [Ni(C(7)H(4)BrO(2))(2)(C(10)H(14)N(2)O)(2)(H(2)O)(2)], the Ni(II) ion is located on an inversion center. The asymmetric unit contains one 2-bromo-benzoate ligand, one diethyl-nicotinamide (DENA) ligand and one coordinated water mol-ecule. The four O atoms in the equatorial plane around the Ni(II) ion form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by two N atoms of two DENA ligands in the axial positions. The dihedral angle between the benzene ring and the attached carboxyl-ate group is 87.73 (15)°, while the pyridine and benzene rings are oriented at a dihedral angle of 42.48 (7)°. In the crystal structure, O-H⋯O hydrogen bonds link the mol-ecules into a two-dimensional network parallel to (10). In addition, C-H⋯O hydrogen bonds are observed.

Entities:  

Year:  2009        PMID: 21582698      PMCID: PMC2969431          DOI: 10.1107/S1600536809021795

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general backgroud, see: Antolini et al. (1982 ▶); Bigoli et al. (1972 ▶); Nadzhafov et al. (1981 ▶); Shnulin et al. (1981 ▶). For related structures, see: Hökelek et al. (2009a ▶,b ▶,c ▶,d ▶); Özbek et al. (2009 ▶); Sertçelik et al. (2009a ▶,b ▶,c ▶); Tercan et al. (2009 ▶).

Experimental

Crystal data

[Ni(C7H4BrO2)2(C10H14N2O)2(H2O)2] M = 851.22 Monoclinic, a = 12.8506 (3) Å b = 10.3448 (2) Å c = 14.9418 (4) Å β = 114.004 (2)° V = 1814.53 (8) Å3 Z = 2 Mo Kα radiation μ = 2.79 mm−1 T = 100 K 0.34 × 0.25 × 0.12 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.442, T max = 0.710 16814 measured reflections 4528 independent reflections 3603 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.078 S = 1.04 4528 reflections 233 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.78 e Å−3 Δρmin = −0.78 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809021795/ci2824sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809021795/ci2824Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C7H4BrO2)2(C10H14N2O)2(H2O)2]F(000) = 868
Mr = 851.22Dx = 1.558 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5301 reflections
a = 12.8506 (3) Åθ = 2.5–28.3°
b = 10.3448 (2) ŵ = 2.79 mm1
c = 14.9418 (4) ÅT = 100 K
β = 114.004 (2)°Block, blue
V = 1814.53 (8) Å30.34 × 0.25 × 0.12 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffractometer4528 independent reflections
Radiation source: fine-focus sealed tube3603 reflections with I > 2σ(I)
graphiteRint = 0.044
φ and ω scansθmax = 28.4°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −17→17
Tmin = 0.442, Tmax = 0.710k = −13→13
16814 measured reflectionsl = −19→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.078H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0334P)2 + 0.7499P] where P = (Fo2 + 2Fc2)/3
4528 reflections(Δ/σ)max = 0.001
233 parametersΔρmax = 0.78 e Å3
0 restraintsΔρmin = −0.77 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.17947 (2)0.14287 (2)0.072440 (17)0.02619 (8)
Ni10.50000.00000.00000.01120 (9)
O10.46945 (12)0.05353 (14)0.11821 (10)0.0154 (3)
O20.37193 (16)−0.11792 (15)0.13480 (13)0.0270 (4)
O30.07077 (13)0.11718 (14)−0.39530 (10)0.0173 (3)
O40.61679 (13)0.15121 (15)0.03504 (12)0.0146 (3)
H410.607 (3)0.219 (3)0.056 (2)0.036 (9)*
H420.621 (3)0.159 (3)−0.015 (3)0.040 (9)*
N10.36374 (15)0.12018 (16)−0.08963 (12)0.0134 (4)
N20.01992 (15)−0.00539 (17)−0.29453 (12)0.0167 (4)
C10.41035 (18)−0.0066 (2)0.15502 (15)0.0156 (4)
C20.38690 (18)0.0695 (2)0.23103 (15)0.0163 (4)
C30.29000 (19)0.1455 (2)0.20453 (16)0.0196 (4)
C40.2709 (2)0.2248 (2)0.27162 (17)0.0247 (5)
H40.20600.27610.25210.030*
C50.3501 (2)0.2258 (2)0.36754 (18)0.0278 (5)
H50.33940.27990.41280.033*
C60.4451 (2)0.1473 (2)0.39693 (18)0.0269 (5)
H60.49670.14620.46220.032*
C70.4636 (2)0.0699 (2)0.32851 (16)0.0217 (5)
H70.52810.01780.34840.026*
C80.36086 (18)0.2475 (2)−0.07399 (15)0.0158 (4)
H80.42050.2842−0.02100.019*
C90.27291 (18)0.3269 (2)−0.13331 (16)0.0173 (4)
H90.27470.4151−0.12070.021*
C100.18249 (17)0.2735 (2)−0.21145 (15)0.0161 (4)
H100.12330.3249−0.25310.019*
C110.18272 (17)0.1406 (2)−0.22590 (14)0.0142 (4)
C120.27482 (17)0.0686 (2)−0.16478 (14)0.0142 (4)
H120.2753−0.0197−0.17620.017*
C130.08624 (17)0.08196 (19)−0.31130 (15)0.0139 (4)
C14−0.07886 (18)−0.0564 (2)−0.37834 (16)0.0187 (4)
H14A−0.0945−0.1439−0.36400.022*
H14B−0.0611−0.0595−0.43550.022*
C15−0.18402 (19)0.0266 (2)−0.40082 (18)0.0251 (5)
H15A−0.2463−0.0081−0.45660.038*
H15B−0.16870.1133−0.41480.038*
H15C−0.20360.0270−0.34530.038*
C160.0277 (2)−0.0429 (2)−0.19692 (16)0.0259 (5)
H16A−0.0472−0.0364−0.19610.031*
H16B0.07760.0171−0.14860.031*
C170.0725 (2)−0.1794 (3)−0.16850 (19)0.0348 (6)
H17A0.0684−0.2022−0.10770.052*
H17B0.1502−0.1836−0.16110.052*
H17C0.0271−0.2385−0.21870.052*
U11U22U33U12U13U23
Br10.02396 (13)0.03283 (15)0.02130 (13)0.00577 (10)0.00871 (9)0.00345 (10)
Ni10.01157 (17)0.01200 (18)0.00955 (17)−0.00007 (13)0.00379 (13)−0.00031 (13)
O10.0171 (7)0.0169 (7)0.0139 (7)−0.0024 (6)0.0080 (6)−0.0022 (6)
O20.0446 (11)0.0170 (8)0.0312 (9)−0.0089 (7)0.0275 (8)−0.0057 (7)
O30.0209 (8)0.0158 (7)0.0119 (7)−0.0003 (6)0.0032 (6)0.0022 (6)
O40.0173 (7)0.0128 (8)0.0139 (8)−0.0008 (6)0.0065 (6)−0.0006 (6)
N10.0146 (8)0.0135 (8)0.0118 (8)0.0001 (7)0.0052 (7)0.0011 (6)
N20.0174 (9)0.0198 (9)0.0112 (8)−0.0032 (7)0.0041 (7)−0.0005 (7)
C10.0171 (10)0.0166 (10)0.0142 (10)0.0028 (8)0.0077 (8)0.0016 (8)
C20.0209 (10)0.0153 (11)0.0184 (10)−0.0030 (8)0.0137 (9)−0.0019 (8)
C30.0225 (11)0.0203 (11)0.0185 (11)−0.0006 (9)0.0110 (9)0.0011 (9)
C40.0306 (13)0.0230 (12)0.0286 (13)0.0011 (10)0.0203 (11)−0.0026 (10)
C50.0391 (14)0.0261 (13)0.0279 (13)−0.0078 (11)0.0237 (11)−0.0110 (10)
C60.0300 (13)0.0343 (14)0.0189 (11)−0.0101 (11)0.0126 (10)−0.0063 (10)
C70.0194 (11)0.0260 (12)0.0215 (11)−0.0024 (9)0.0101 (9)−0.0025 (9)
C80.0172 (10)0.0155 (10)0.0142 (10)−0.0013 (8)0.0058 (8)−0.0013 (8)
C90.0199 (10)0.0128 (10)0.0180 (10)−0.0001 (8)0.0064 (8)−0.0002 (8)
C100.0159 (10)0.0175 (10)0.0135 (10)0.0029 (8)0.0046 (8)0.0027 (8)
C110.0153 (10)0.0159 (10)0.0111 (9)−0.0013 (8)0.0052 (8)0.0006 (8)
C120.0154 (10)0.0146 (10)0.0127 (10)−0.0003 (8)0.0058 (8)0.0002 (8)
C130.0137 (9)0.0109 (9)0.0144 (10)0.0021 (8)0.0029 (8)0.0009 (8)
C140.0189 (10)0.0185 (11)0.0161 (10)−0.0049 (9)0.0043 (8)−0.0026 (8)
C150.0193 (11)0.0290 (13)0.0235 (12)0.0002 (9)0.0052 (9)0.0036 (10)
C160.0253 (12)0.0369 (14)0.0144 (10)−0.0126 (10)0.0069 (9)0.0000 (10)
C170.0284 (13)0.0422 (16)0.0254 (13)−0.0081 (12)0.0022 (11)0.0177 (11)
Br1—C31.906 (2)C7—H70.93
Ni1—O12.0359 (14)C8—N11.341 (3)
Ni1—O1i2.0359 (14)C8—H80.93
Ni1—O42.0818 (15)C9—C81.387 (3)
Ni1—O4i2.0818 (15)C9—H90.93
Ni1—N12.1207 (17)C10—C91.384 (3)
Ni1—N1i2.1207 (17)C10—H100.93
O1—C11.267 (3)C11—C101.392 (3)
O2—C11.240 (3)C11—C121.382 (3)
O3—C131.243 (2)C11—C131.499 (3)
O4—H410.80 (3)C12—N11.344 (3)
O4—H420.78 (3)C12—H120.93
N2—C131.334 (3)C14—C151.519 (3)
N2—C141.471 (3)C14—H14A0.97
N2—C161.473 (3)C14—H14B0.97
C2—C11.510 (3)C15—H15A0.96
C2—C71.387 (3)C15—H15B0.96
C3—C21.387 (3)C15—H15C0.96
C3—C41.392 (3)C16—C171.518 (4)
C4—C51.379 (3)C16—H16A0.97
C4—H40.93C16—H16B0.97
C5—H50.93C17—H17A0.96
C6—C51.381 (4)C17—H17B0.96
C6—C71.393 (3)C17—H17C0.96
C6—H60.93
O1—Ni1—O1i180.00 (7)C2—C7—H7119.6
O1—Ni1—O487.20 (6)C6—C7—H7119.6
O1i—Ni1—O492.80 (6)N1—C8—C9122.93 (19)
O1—Ni1—O4i92.80 (6)N1—C8—H8118.5
O1i—Ni1—O4i87.20 (6)C9—C8—H8118.5
O1—Ni1—N189.27 (6)C8—C9—H9120.4
O1i—Ni1—N190.73 (6)C10—C9—C8119.3 (2)
O1—Ni1—N1i90.73 (6)C10—C9—H9120.4
O1i—Ni1—N1i89.27 (6)C9—C10—C11118.11 (19)
O4i—Ni1—O4180.00 (9)C9—C10—H10120.9
O4—Ni1—N192.52 (6)C11—C10—H10120.9
O4i—Ni1—N187.48 (6)C10—C11—C13118.60 (18)
O4—Ni1—N1i87.48 (6)C12—C11—C10119.01 (19)
O4i—Ni1—N1i92.52 (6)C12—C11—C13122.28 (18)
N1i—Ni1—N1180.00 (16)N1—C12—C11123.15 (19)
C1—O1—Ni1127.15 (13)N1—C12—H12118.4
Ni1—O4—H41123 (2)C11—C12—H12118.4
Ni1—O4—H4299 (2)O3—C13—N2122.44 (18)
H41—O4—H42112 (3)O3—C13—C11118.57 (18)
C8—N1—Ni1122.69 (14)N2—C13—C11118.99 (18)
C8—N1—C12117.44 (18)N2—C14—C15111.57 (18)
C12—N1—Ni1119.87 (14)N2—C14—H14A109.3
C13—N2—C14118.61 (17)N2—C14—H14B109.3
C13—N2—C16124.98 (18)C15—C14—H14A109.3
C14—N2—C16115.85 (18)C15—C14—H14B109.3
O1—C1—C2114.11 (18)H14A—C14—H14B108.0
O2—C1—O1126.8 (2)C14—C15—H15A109.5
O2—C1—C2119.06 (19)C14—C15—H15B109.5
C3—C2—C1120.77 (19)C14—C15—H15C109.5
C7—C2—C1121.2 (2)H15A—C15—H15B109.5
C7—C2—C3118.0 (2)H15A—C15—H15C109.5
C2—C3—Br1119.46 (17)H15B—C15—H15C109.5
C2—C3—C4121.9 (2)N2—C16—C17112.8 (2)
C4—C3—Br1118.60 (18)N2—C16—H16A109.0
C3—C4—H4120.6N2—C16—H16B109.0
C5—C4—C3118.8 (2)C17—C16—H16A109.0
C5—C4—H4120.6C17—C16—H16B109.0
C5—C6—C7119.8 (2)H16A—C16—H16B107.8
C5—C6—H6120.1C16—C17—H17A109.5
C7—C6—H6120.1C16—C17—H17B109.5
C4—C5—C6120.6 (2)C16—C17—H17C109.5
C4—C5—H5119.7H17A—C17—H17B109.5
C6—C5—H5119.7H17A—C17—H17C109.5
C2—C7—C6120.8 (2)H17B—C17—H17C109.5
O4i—Ni1—O1—C18.54 (17)C1—C2—C7—C6175.5 (2)
O4—Ni1—O1—C1−171.46 (17)C3—C2—C7—C6−1.8 (3)
N1i—Ni1—O1—C1−84.02 (17)Br1—C3—C2—C15.0 (3)
N1—Ni1—O1—C195.98 (17)Br1—C3—C2—C7−177.63 (16)
O1—Ni1—N1—C858.46 (17)C4—C3—C2—C1−174.6 (2)
O1i—Ni1—N1—C8−121.54 (17)C4—C3—C2—C72.7 (3)
O1—Ni1—N1—C12−120.53 (16)Br1—C3—C4—C5179.28 (18)
O1i—Ni1—N1—C1259.47 (16)C2—C3—C4—C5−1.1 (4)
O4i—Ni1—N1—C8151.29 (17)C3—C4—C5—C6−1.5 (4)
O4—Ni1—N1—C8−28.71 (17)C5—C6—C7—C2−0.7 (4)
O4i—Ni1—N1—C12−27.70 (16)C7—C6—C5—C42.4 (4)
O4—Ni1—N1—C12152.30 (16)C9—C8—N1—C12−2.1 (3)
Ni1—O1—C1—O210.3 (3)C9—C8—N1—Ni1178.91 (16)
Ni1—O1—C1—C2−169.71 (13)C10—C9—C8—N11.1 (3)
C14—N2—C13—O3−3.5 (3)C11—C10—C9—C81.4 (3)
C14—N2—C13—C11176.21 (18)C12—C11—C10—C9−2.8 (3)
C16—N2—C13—O3−174.5 (2)C13—C11—C10—C9−179.0 (2)
C16—N2—C13—C115.1 (3)C10—C11—C12—N11.9 (3)
C13—N2—C14—C15−88.5 (2)C13—C11—C12—N1177.95 (19)
C16—N2—C14—C1583.4 (2)C10—C11—C13—O361.2 (3)
C13—N2—C16—C17−110.3 (2)C10—C11—C13—N2−118.5 (2)
C14—N2—C16—C1778.4 (2)C12—C11—C13—O3−114.9 (2)
C3—C2—C1—O2−88.9 (3)C12—C11—C13—N265.5 (3)
C7—C2—C1—O293.8 (3)C11—C12—N1—C80.5 (3)
C3—C2—C1—O191.1 (2)C11—C12—N1—Ni1179.58 (16)
C7—C2—C1—O1−86.2 (2)
D—H···AD—HH···AD···AD—H···A
O4—H41···O3ii0.80 (3)1.97 (3)2.770 (2)176 (4)
O4—H42···O2i0.78 (4)1.88 (4)2.623 (3)161 (3)
C4—H4···O2iii0.932.543.172 (3)126
C8—H8···O3ii0.932.313.241 (3)177
C10—H10···O1iv0.932.473.392 (3)172
C14—H14A···O2v0.972.503.448 (3)166
C14—H14B···O3vi0.972.553.483 (3)161
Table 1

Selected bond lengths (Å)

Ni1—O12.0359 (14)
Ni1—O42.0818 (15)
Ni1—N12.1207 (17)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H41⋯O3i0.80 (3)1.97 (3)2.770 (2)176 (4)
O4—H42⋯O2ii0.78 (4)1.88 (4)2.623 (3)161 (3)
C4—H4⋯O2iii0.932.543.172 (3)126
C8—H8⋯O3i0.932.313.241 (3)177
C10—H10⋯O1iv0.932.473.392 (3)172
C14—H14A⋯O2v0.972.503.448 (3)166
C14—H14B⋯O3vi0.972.553.483 (3)161

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  10 in total

1.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Bis[4-(methyl-amino)benzoato-κO]bis-(nicotinamide-κN)zinc(II).

Authors:  Barış Tercan; Tuncer Hökelek; Ozgür Aybirdi; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-20

3.  Diaqua-bis(2-bromo-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)zinc(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-02

4.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)cobalt(II).

Authors:  Mustafa Sertçelik; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-11

5.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)nickel(II).

Authors:  Mustafa Sertçelik; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25

6.  Diaqua-bis(2-chloro-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-22

7.  Tetra-aqua-bis(nicotinamide-κN)cobalt(II) bis-(2-fluoro-benzoate).

Authors:  F Elif Ozbek; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-28

8.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)manganese(II).

Authors:  Mustafa Sertçelik; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25

9.  Diaqua-bis(2-chloro-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-31

10.  Diaqua-bis(2-bromo-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)manganese(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-18
  10 in total
  1 in total

1.  Diaqua-bis-(2-bromo-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)cobalt(II).

Authors:  Tuncer Hökelek; Güner Saka; Barış Tercan; Füreya Elif Oztürkkan; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18
  1 in total

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