Literature DB >> 21582098

Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)nickel(II).

Mustafa Sertçelik, Barış Tercan, Ertan Sahin, Hacali Necefoğlu, Tuncer Hökelek.   

Abstract

In the title centrosymmetric mononuclear Ni(II) compound, [Ni(C(8)H(5)O(3))(2)(C(10)H(14)N(2)O)(2)(H(2)O)(2)], the central Ni(II) atom is coordinated by two O atoms from two 4-formyl-benzoate (FOB) ligands, two O atoms from two water mol-ecules and two N atoms from two diethyl-nicotinamide (DENA) ligands. The coordination geometry is slightly distorted octa-hedral, with four O atoms in the equatorial plane and two N atoms in axial positions. Intra-molecular O-H⋯O hydrogen bonds are observed. In the crystal structure, mol-ecules are linked into chains along the a axis by inter-molecular O-H⋯O hydrogen bonds. The structure is further stabilized by π-π inter-actions between the pyridine rings of DENA units, with a centroid-centroid distance of 3.668 (2) Å.

Entities:  

Year:  2009        PMID: 21582098      PMCID: PMC2968564          DOI: 10.1107/S1600536809006345

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Antolini et al. (1982 ▶); Bigoli et al. (1972 ▶); Nadzhafov et al. (1981 ▶); Shnulin et al. (1981 ▶). For related structures, see: Hökelek et al. (1995 ▶, 1997 ▶, 2007 ▶, 2008 ▶); Hökelek & Necefouglu (1996 ▶, 1997 ▶); Hökelek & Necefoğlu (2007 ▶); Sertçelik et al. (2009 ▶).

Experimental

Crystal data

[Ni(C8H5O3)2(C10H14N2O)2(H2O)2] M = 749.43 Triclinic, a = 7.2909 (2) Å b = 8.6883 (3) Å c = 15.9037 (4) Å α = 85.034 (5)° β = 78.576 (4)° γ = 67.594 (3)° V = 912.85 (5) Å3 Z = 1 Mo Kα radiation μ = 0.59 mm−1 T = 294 K 0.35 × 0.20 × 0.15 mm

Data collection

Rigaku R-AXIS RAPID-S diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.870, T max = 0.918 19676 measured reflections 3740 independent reflections 2797 reflections with I > 2σ(I) R int = 0.098

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.122 S = 1.04 3740 reflections 242 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.50 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809006345/ci2769sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809006345/ci2769Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C8H5O3)2(C10H14N2O)2(H2O)2]Z = 1
Mr = 749.43F(000) = 394
Triclinic, P1Dx = 1.363 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.2909 (2) ÅCell parameters from 4227 reflections
b = 8.6883 (3) Åθ = 2.5–26.4°
c = 15.9037 (4) ŵ = 0.59 mm1
α = 85.034 (5)°T = 294 K
β = 78.576 (4)°Prism, green
γ = 67.594 (3)°0.35 × 0.20 × 0.15 mm
V = 912.85 (5) Å3
Rigaku R-AXIS RAPID-S diffractometer3740 independent reflections
Radiation source: fine-focus sealed tube2797 reflections with I > 2σ(I)
graphiteRint = 0.098
ω scansθmax = 26.4°, θmin = 2.5°
Absorption correction: multi-scan (Blessing, 1995)h = −9→9
Tmin = 0.870, Tmax = 0.918k = −10→10
19676 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0235P)2 + 0.8051P] where P = (Fo2 + 2Fc2)/3
3740 reflections(Δ/σ)max = 0.001
242 parametersΔρmax = 0.50 e Å3
3 restraintsΔρmin = −0.31 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O5−0.2711 (4)−0.0197 (4)0.06069 (16)0.0494 (6)
H52−0.284 (6)0.028 (4)0.1070 (13)0.069 (14)*
H51−0.260 (6)−0.1180 (19)0.074 (2)0.072 (15)*
Ni10.00000.00000.00000.03948 (19)
O10.0244 (3)0.1122 (3)0.10462 (14)0.0465 (6)
O2−0.2567 (4)0.1272 (3)0.19683 (16)0.0569 (7)
N10.1775 (4)−0.2306 (3)0.04762 (17)0.0427 (7)
O40.7320 (4)−0.3311 (3)0.12366 (16)0.0579 (7)
C1−0.0812 (5)0.1254 (4)0.1788 (2)0.0430 (8)
C120.4355 (5)−0.3815 (4)0.1297 (2)0.0423 (8)
C130.3191 (5)−0.2372 (4)0.0918 (2)0.0433 (8)
H130.3401−0.13980.09740.052*
C70.2092 (5)0.1420 (4)0.2370 (2)0.0467 (8)
H70.27870.13840.18100.056*
C90.1550 (5)−0.3738 (4)0.0380 (2)0.0467 (8)
H90.0593−0.37220.00670.056*
C20.0178 (5)0.1355 (4)0.2521 (2)0.0420 (8)
N20.6115 (5)−0.4182 (4)0.2506 (2)0.0617 (9)
C3−0.0823 (5)0.1368 (4)0.3360 (2)0.0502 (9)
H3−0.20930.13040.34720.060*
C110.4075 (5)−0.5277 (4)0.1196 (2)0.0477 (9)
H110.4824−0.62690.14450.057*
O30.4414 (5)0.1916 (5)0.4558 (2)0.0974 (11)
C140.6023 (5)−0.3740 (4)0.1690 (2)0.0474 (9)
C40.0071 (6)0.1476 (5)0.4030 (2)0.0559 (10)
H4−0.06060.14830.45910.067*
C60.2976 (5)0.1538 (5)0.3041 (2)0.0523 (9)
H60.42510.15920.29320.063*
C100.2674 (5)−0.5233 (4)0.0723 (2)0.0505 (9)
H100.2483−0.62020.06350.061*
C50.1956 (6)0.1575 (5)0.3878 (2)0.0533 (9)
C170.7912 (7)−0.4225 (6)0.2841 (3)0.0746 (13)
H17A0.8047−0.49120.33560.090*
H17B0.9119−0.47230.24170.090*
C150.4604 (7)−0.4666 (6)0.3106 (3)0.0740 (13)
H15A0.3689−0.48230.27850.089*
H15B0.5285−0.57250.33730.089*
C160.3433 (9)−0.3450 (9)0.3777 (4)0.137 (3)
H16A0.2414−0.37970.41190.206*
H16B0.2804−0.23830.35180.206*
H16C0.4309−0.33670.41340.206*
C80.2863 (7)0.1717 (6)0.4606 (3)0.0767 (13)
H80.21590.16450.51540.092*
C180.7725 (8)−0.2525 (6)0.3038 (3)0.0961 (17)
H18A0.8938−0.25820.32120.144*
H18B0.6600−0.20680.34940.144*
H18C0.7518−0.18270.25370.144*
U11U22U33U12U13U23
O50.0454 (14)0.0569 (17)0.0485 (16)−0.0216 (13)−0.0106 (12)0.0032 (14)
Ni10.0359 (3)0.0445 (4)0.0398 (4)−0.0152 (3)−0.0123 (3)0.0044 (3)
O10.0473 (14)0.0542 (15)0.0420 (14)−0.0207 (12)−0.0141 (11)0.0019 (11)
O20.0440 (14)0.0733 (18)0.0544 (15)−0.0224 (13)−0.0070 (12)−0.0074 (13)
N10.0374 (15)0.0452 (17)0.0475 (17)−0.0160 (13)−0.0122 (12)0.0030 (13)
O40.0500 (15)0.0703 (18)0.0611 (16)−0.0315 (14)−0.0132 (13)0.0098 (14)
C10.0424 (19)0.0387 (19)0.046 (2)−0.0103 (15)−0.0139 (16)0.0022 (15)
C120.0368 (18)0.050 (2)0.0411 (19)−0.0174 (16)−0.0105 (15)0.0058 (16)
C130.0418 (18)0.0436 (19)0.047 (2)−0.0158 (16)−0.0144 (16)0.0009 (16)
C70.048 (2)0.053 (2)0.0386 (19)−0.0192 (17)−0.0045 (15)−0.0002 (16)
C90.046 (2)0.054 (2)0.046 (2)−0.0236 (18)−0.0159 (16)0.0037 (17)
C20.0421 (19)0.0426 (19)0.0410 (19)−0.0144 (16)−0.0106 (15)0.0013 (15)
N20.061 (2)0.080 (2)0.057 (2)−0.0371 (18)−0.0232 (16)0.0143 (18)
C30.044 (2)0.057 (2)0.048 (2)−0.0182 (18)−0.0081 (16)0.0019 (18)
C110.0444 (19)0.046 (2)0.051 (2)−0.0137 (17)−0.0145 (16)0.0106 (17)
O30.101 (3)0.155 (3)0.069 (2)−0.076 (3)−0.0352 (19)0.005 (2)
C140.044 (2)0.050 (2)0.050 (2)−0.0176 (17)−0.0140 (17)0.0077 (17)
C40.062 (2)0.066 (3)0.038 (2)−0.024 (2)−0.0041 (17)−0.0028 (18)
C60.051 (2)0.061 (2)0.051 (2)−0.0257 (19)−0.0137 (17)−0.0005 (18)
C100.054 (2)0.046 (2)0.057 (2)−0.0224 (18)−0.0179 (18)0.0045 (17)
C50.058 (2)0.062 (2)0.044 (2)−0.025 (2)−0.0139 (18)0.0018 (18)
C170.081 (3)0.078 (3)0.076 (3)−0.033 (3)−0.038 (2)0.014 (2)
C150.081 (3)0.092 (3)0.057 (3)−0.040 (3)−0.019 (2)0.009 (2)
C160.102 (5)0.176 (7)0.131 (5)−0.059 (5)0.026 (4)−0.069 (5)
C80.081 (3)0.106 (4)0.054 (3)−0.042 (3)−0.024 (2)−0.003 (2)
C180.128 (5)0.085 (4)0.094 (4)−0.046 (3)−0.049 (3)−0.002 (3)
O5—Ni12.084 (2)N2—C171.496 (5)
O5—H520.85 (3)C3—C41.380 (5)
O5—H510.84 (2)C3—H30.93
Ni1—O12.069 (2)C11—C101.371 (5)
Ni1—O1i2.069 (2)C11—H110.93
Ni1—O5i2.084 (2)O3—C81.194 (5)
Ni1—N12.100 (3)C4—C51.382 (5)
Ni1—N1i2.100 (3)C4—H40.93
O1—C11.263 (4)C6—C51.386 (5)
O2—C11.249 (4)C6—H60.93
N1—C91.340 (4)C10—H100.93
N1—C131.341 (4)C5—C81.478 (5)
O4—C141.227 (4)C17—C181.486 (6)
C1—C21.511 (4)C17—H17A0.97
C12—C131.384 (4)C17—H17B0.97
C12—C111.389 (5)C15—C161.459 (6)
C12—C141.498 (4)C15—H15A0.97
C13—H130.93C15—H15B0.97
C7—C61.380 (4)C16—H16A0.96
C7—C21.391 (4)C16—H16B0.96
C7—H70.93C16—H16C0.96
C9—C101.379 (5)C8—H80.93
C9—H90.93C18—H18A0.96
C2—C31.388 (5)C18—H18B0.96
N2—C141.328 (4)C18—H18C0.96
N2—C151.473 (5)
Ni1—O5—H5298 (3)C10—C11—C12118.8 (3)
Ni1—O5—H51113 (3)C10—C11—H11120.6
H52—O5—H51106 (2)C12—C11—H11120.6
O1—Ni1—O1i180.00 (6)O4—C14—N2121.3 (3)
O1—Ni1—O592.91 (10)O4—C14—C12118.6 (3)
O1i—Ni1—O587.09 (10)N2—C14—C12120.1 (3)
O1—Ni1—O5i87.09 (10)C3—C4—C5121.0 (3)
O1i—Ni1—O5i92.91 (10)C3—C4—H4119.5
O5—Ni1—O5i180.00 (19)C5—C4—H4119.5
O1—Ni1—N188.53 (10)C7—C6—C5119.8 (3)
O1i—Ni1—N191.47 (10)C7—C6—H6120.1
O5—Ni1—N193.76 (10)C5—C6—H6120.1
O5i—Ni1—N186.24 (10)C11—C10—C9119.3 (3)
O1—Ni1—N1i91.47 (10)C11—C10—H10120.3
O1i—Ni1—N1i88.53 (10)C9—C10—H10120.3
O5—Ni1—N1i86.24 (10)C4—C5—C6119.4 (3)
O5i—Ni1—N1i93.76 (10)C4—C5—C8119.8 (4)
N1—Ni1—N1i180.0 (2)C6—C5—C8120.8 (4)
C1—O1—Ni1126.8 (2)C18—C17—N2111.3 (4)
C9—N1—C13117.2 (3)C18—C17—H17A109.4
C9—N1—Ni1123.6 (2)N2—C17—H17A109.4
C13—N1—Ni1119.3 (2)C18—C17—H17B109.4
O2—C1—O1125.9 (3)N2—C17—H17B109.4
O2—C1—C2117.7 (3)H17A—C17—H17B108.0
O1—C1—C2116.3 (3)C16—C15—N2113.6 (4)
C13—C12—C11118.2 (3)C16—C15—H15A108.8
C13—C12—C14117.4 (3)N2—C15—H15A108.8
C11—C12—C14123.8 (3)C16—C15—H15B108.8
N1—C13—C12123.4 (3)N2—C15—H15B108.8
N1—C13—H13118.3H15A—C15—H15B107.7
C12—C13—H13118.3C15—C16—H16A109.5
C6—C7—C2120.9 (3)C15—C16—H16B109.5
C6—C7—H7119.6H16A—C16—H16B109.5
C2—C7—H7119.6C15—C16—H16C109.5
N1—C9—C10123.0 (3)H16A—C16—H16C109.5
N1—C9—H9118.5H16B—C16—H16C109.5
C10—C9—H9118.5O3—C8—C5126.2 (4)
C3—C2—C7119.0 (3)O3—C8—H8116.9
C3—C2—C1119.8 (3)C5—C8—H8116.9
C7—C2—C1121.2 (3)C17—C18—H18A109.5
C14—N2—C15125.2 (3)C17—C18—H18B109.5
C14—N2—C17117.6 (3)H18A—C18—H18B109.5
C15—N2—C17117.1 (3)C17—C18—H18C109.5
C4—C3—C2119.9 (3)H18A—C18—H18C109.5
C4—C3—H3120.1H18B—C18—H18C109.5
C2—C3—H3120.1
O5—Ni1—O1—C110.8 (3)C7—C2—C3—C41.2 (5)
O5i—Ni1—O1—C1−169.2 (3)C1—C2—C3—C4−179.4 (3)
N1—Ni1—O1—C1−82.9 (3)C13—C12—C11—C100.4 (5)
N1i—Ni1—O1—C197.1 (3)C14—C12—C11—C10−171.1 (3)
O1—Ni1—N1—C9146.8 (3)C15—N2—C14—O4178.1 (4)
O1i—Ni1—N1—C9−33.2 (3)C17—N2—C14—O4−3.2 (6)
O5—Ni1—N1—C954.0 (3)C15—N2—C14—C12−4.0 (6)
O5i—Ni1—N1—C9−126.0 (3)C17—N2—C14—C12174.7 (3)
O1—Ni1—N1—C13−31.7 (2)C13—C12—C14—O4−57.3 (5)
O1i—Ni1—N1—C13148.3 (2)C11—C12—C14—O4114.3 (4)
O5—Ni1—N1—C13−124.5 (3)C13—C12—C14—N2124.7 (4)
O5i—Ni1—N1—C1355.5 (3)C11—C12—C14—N2−63.7 (5)
Ni1—O1—C1—O2−26.2 (5)C2—C3—C4—C50.1 (6)
Ni1—O1—C1—C2152.2 (2)C2—C7—C6—C50.7 (5)
C9—N1—C13—C12−2.3 (5)C12—C11—C10—C9−1.6 (5)
Ni1—N1—C13—C12176.3 (2)N1—C9—C10—C110.8 (6)
C11—C12—C13—N11.6 (5)C3—C4—C5—C6−1.0 (6)
C14—C12—C13—N1173.7 (3)C3—C4—C5—C8179.0 (4)
C13—N1—C9—C101.1 (5)C7—C6—C5—C40.7 (6)
Ni1—N1—C9—C10−177.5 (3)C7—C6—C5—C8−179.4 (4)
C6—C7—C2—C3−1.6 (5)C14—N2—C17—C1878.7 (5)
C6—C7—C2—C1179.0 (3)C15—N2—C17—C18−102.4 (5)
O2—C1—C2—C33.7 (5)C14—N2—C15—C16−110.3 (5)
O1—C1—C2—C3−174.9 (3)C17—N2—C15—C1671.0 (6)
O2—C1—C2—C7−177.0 (3)C4—C5—C8—O3−175.0 (5)
O1—C1—C2—C74.5 (5)C6—C5—C8—O35.1 (7)
D—H···AD—HH···AD···AD—H···A
O5—H51···O4ii0.84 (2)1.97 (2)2.796 (4)170 (3)
O5—H52···O20.85 (3)1.81 (3)2.646 (4)168 (4)
Table 1

Selected bond lengths (Å)

O5—Ni12.084 (2)
Ni1—O12.069 (2)
Ni1—N12.100 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H51⋯O4i0.84 (2)1.97 (2)2.796 (4)170 (3)
O5—H52⋯O20.85 (3)1.81 (3)2.646 (4)168 (4)

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  Diaqua-bis(4-chloro-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)manganese(II).

Authors:  Tuncer Hökelek; Nagihan Caylak; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-29

4.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)manganese(II).

Authors:  Mustafa Sertçelik; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25
  4 in total
  12 in total

1.  Tetra-aqua-bis(nicotinamide-κN)nickel(II) bis-(2-fluoro-benzoate).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-10

2.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)cobalt(II).

Authors:  Mustafa Sertçelik; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-11

3.  Diaqua-bis(2-bromo-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Filiz Yılmaz; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-13

4.  Tetra-aqua-bis[4-(methyl-amino)benzoato-κO]nickel(II).

Authors:  Hacali Necefoğlu; Ozgür Aybirdi; Barış Tercan; Yasemin Süzen; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-28

5.  Tetra-aqua-bis(isonicotinamide-κN)nickel(II) bis-(4-formyl-benzoate) dihydrate.

Authors:  Tuncer Hökelek; Filiz Yılmaz; Barış Tercan; Ferdi Gürgen; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-19

6.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-[4-(dimethyl-amino)benzoato-κO]nickel(II).

Authors:  Tuncer Hökelek; Yasemin Süzen; Barış Tercan; Ozgür Aybirdi; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-31

7.  Diaqua-bis(2-chloro-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-31

8.  Diaqua-bis(2-bromo-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Filiz Yılmaz; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-13

9.  trans-Tetra-aqua-bis-(isonicotinamide-κN (1))zinc bis-(3-hy-droxy-benzoate) tetra-hydrate.

Authors:  Ibrahim Göker Zaman; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-13

10.  Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))zinc.

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-28
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