Literature DB >> 21578994

Diaqua-bis(4-methyl-benzoato-κO)bis-(nicotinamide-κN)manganese(II).

Hacali Necefoğlu, Efdal Cimen, Barış Tercan, Hakan Dal, Tuncer Hökelek.   

Abstract

In the mononuclear title complex, [Mn(C(8)H(7)O(2))(2)(C(6)H(6)N(2)O)(2)(H(2)O)(2)], the Mn(II) ion is located on a crystallographic inversion center. The asymmetric unit contains one 4-methyl-benzoate anion, one nicotinamide (NA) ligand and one coordinated water mol-ecule. The four O atoms in the equatorial plane around the Mn(II) ion form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two pyridine N atoms of the NA ligands in the axial positions. The dihedral angle between the carboxyl-ate group and the attached benzene ring is 9.01 (7)°, while the pyridine and benzene rings are oriented at a dihedral angle of 42.44 (5)°. In the crystal structure, inter-molecular O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds, and O-H⋯π and C-H⋯π inter-actions link the mol-ecules into a two-dimensional network parallel to (001).

Entities:  

Year:  2010        PMID: 21578994      PMCID: PMC2979200          DOI: 10.1107/S1600536810011815

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For niacin, see: Krishnamachari (1974 ▶), and for the nicotinic acid derivative N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Hökelek et al. (1996 ▶, 2009a ▶,b ▶,c ▶); Hökelek & Necefoğlu (1998 ▶); Necefoğlu et al. (2010 ▶).

Experimental

Crystal data

[Mn(C8H7O2)2(C6H6N2O)2(H2O)2] M = 605.51 Triclinic, a = 7.3289 (2) Å b = 10.1768 (3) Å c = 10.6292 (3) Å α = 66.852 (2)° β = 78.232 (4)° γ = 70.206 (3)° V = 683.58 (4) Å3 Z = 1 Mo Kα radiation μ = 0.54 mm−1 T = 100 K 0.38 × 0.25 × 0.19 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.649, T max = 0.698 11619 measured reflections 3297 independent reflections 3022 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.099 S = 1.08 3297 reflections 204 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.73 e Å−3 Δρmin = −0.38 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810011815/ci5069sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810011815/ci5069Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C8H7O2)2(C6H6N2O)2(H2O)2]Z = 1
Mr = 605.51F(000) = 315
Triclinic, P1Dx = 1.471 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3289 (2) ÅCell parameters from 8087 reflections
b = 10.1768 (3) Åθ = 2.5–28.4°
c = 10.6292 (3) ŵ = 0.54 mm1
α = 66.852 (2)°T = 100 K
β = 78.232 (4)°Block, colourless
γ = 70.206 (3)°0.38 × 0.25 × 0.19 mm
V = 683.58 (4) Å3
Bruker Kappa APEXII CCD area-detector diffractometer3297 independent reflections
Radiation source: fine-focus sealed tube3022 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 28.4°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→9
Tmin = 0.649, Tmax = 0.698k = −11→13
11619 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.058P)2 + 0.3059P] where P = (Fo2 + 2Fc2)/3
3297 reflections(Δ/σ)max = 0.001
204 parametersΔρmax = 0.73 e Å3
3 restraintsΔρmin = −0.38 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn10.00000.00000.00000.01276 (11)
O10.24237 (17)−0.33733 (12)0.25988 (12)0.0207 (2)
O20.16077 (17)−0.08763 (12)0.17238 (12)0.0201 (2)
O30.78404 (16)−0.34130 (13)−0.01469 (13)0.0210 (3)
O40.18323 (19)0.15102 (14)−0.09400 (13)0.0232 (3)
H410.208 (4)0.190 (3)−0.1860 (17)0.064 (9)*
H420.218 (4)0.205 (3)−0.058 (2)0.042 (7)*
N10.21166 (18)−0.15932 (14)−0.10409 (13)0.0143 (3)
N20.84692 (19)−0.50868 (14)−0.11834 (14)0.0167 (3)
H210.810 (3)−0.555 (3)−0.159 (2)0.028 (5)*
H220.958 (4)−0.545 (3)−0.084 (2)0.032 (6)*
C10.2620 (2)−0.21470 (17)0.24423 (15)0.0151 (3)
C20.4196 (2)−0.21314 (16)0.31505 (15)0.0145 (3)
C30.4331 (2)−0.07942 (16)0.31453 (15)0.0164 (3)
H30.34260.00990.27140.020*
C40.5805 (2)−0.07856 (18)0.37770 (16)0.0181 (3)
H40.58710.01150.37670.022*
C50.7191 (2)−0.21079 (19)0.44279 (16)0.0190 (3)
C60.7063 (2)−0.34413 (18)0.44183 (16)0.0203 (3)
H60.7979−0.43330.48390.024*
C70.5589 (2)−0.34546 (17)0.37902 (16)0.0177 (3)
H70.5528−0.43550.37950.021*
C80.8783 (3)−0.2097 (2)0.51214 (18)0.0257 (4)
H8A0.8947−0.11150.47630.039*
H8B0.9977−0.27970.49510.039*
H8C0.8437−0.23710.60920.039*
C90.3975 (2)−0.22336 (16)−0.07444 (15)0.0132 (3)
H90.4418−0.1971−0.01420.016*
C100.5280 (2)−0.32707 (16)−0.12893 (15)0.0134 (3)
C110.4623 (2)−0.36415 (17)−0.22143 (16)0.0170 (3)
H110.5453−0.4328−0.26020.020*
C120.2710 (2)−0.29647 (18)−0.25420 (17)0.0198 (3)
H120.2239−0.3182−0.31640.024*
C130.1508 (2)−0.19621 (17)−0.19343 (16)0.0172 (3)
H130.0221−0.1523−0.21530.021*
C140.7300 (2)−0.39401 (16)−0.08365 (15)0.0142 (3)
U11U22U33U12U13U23
Mn10.01065 (17)0.01054 (16)0.01760 (17)0.00071 (11)−0.00334 (11)−0.00758 (12)
O10.0252 (6)0.0149 (5)0.0241 (6)−0.0030 (4)−0.0062 (5)−0.0092 (5)
O20.0216 (6)0.0138 (5)0.0243 (6)0.0035 (4)−0.0106 (5)−0.0092 (4)
O30.0160 (5)0.0184 (5)0.0343 (6)0.0021 (4)−0.0096 (5)−0.0174 (5)
O40.0308 (7)0.0236 (6)0.0233 (6)−0.0146 (5)0.0056 (5)−0.0147 (5)
N10.0126 (6)0.0117 (6)0.0177 (6)−0.0003 (4)−0.0030 (5)−0.0061 (5)
N20.0120 (6)0.0146 (6)0.0258 (7)0.0020 (5)−0.0057 (5)−0.0125 (5)
C10.0149 (7)0.0150 (7)0.0155 (7)0.0004 (5)−0.0019 (5)−0.0091 (6)
C20.0147 (7)0.0137 (7)0.0140 (6)−0.0008 (5)−0.0017 (5)−0.0061 (5)
C30.0175 (7)0.0129 (7)0.0164 (7)−0.0004 (5)−0.0029 (6)−0.0055 (6)
C40.0209 (8)0.0181 (7)0.0173 (7)−0.0059 (6)−0.0014 (6)−0.0080 (6)
C50.0170 (7)0.0245 (8)0.0158 (7)−0.0045 (6)−0.0017 (6)−0.0083 (6)
C60.0182 (7)0.0177 (7)0.0196 (7)0.0026 (6)−0.0066 (6)−0.0053 (6)
C70.0203 (7)0.0124 (7)0.0186 (7)−0.0006 (5)−0.0041 (6)−0.0056 (6)
C80.0199 (8)0.0352 (10)0.0240 (8)−0.0067 (7)−0.0061 (6)−0.0114 (7)
C90.0137 (7)0.0105 (6)0.0160 (6)−0.0017 (5)−0.0027 (5)−0.0060 (5)
C100.0118 (7)0.0101 (6)0.0174 (7)−0.0007 (5)−0.0031 (5)−0.0051 (5)
C110.0146 (7)0.0149 (7)0.0224 (7)0.0015 (5)−0.0042 (6)−0.0110 (6)
C120.0181 (8)0.0194 (7)0.0258 (8)0.0016 (6)−0.0092 (6)−0.0142 (7)
C130.0137 (7)0.0150 (7)0.0229 (7)0.0008 (5)−0.0059 (6)−0.0087 (6)
C140.0127 (7)0.0113 (6)0.0184 (7)−0.0007 (5)−0.0033 (5)−0.0063 (5)
Mn1—O22.1036 (11)C4—C31.387 (2)
Mn1—O2i2.1036 (11)C4—C51.396 (2)
Mn1—O42.1924 (12)C4—H40.93
Mn1—O4i2.1924 (12)C5—C81.507 (2)
Mn1—N12.2947 (13)C6—C51.396 (2)
Mn1—N1i2.2947 (13)C6—C71.387 (2)
O1—C11.2466 (19)C6—H60.93
O2—C11.2690 (18)C7—H70.93
O3—C141.2464 (18)C8—H8A0.96
O4—H410.905 (16)C8—H8B0.96
O4—H420.906 (16)C8—H8C0.96
N1—C91.3386 (18)C9—C101.391 (2)
N1—C131.345 (2)C9—H90.93
N2—C141.3283 (19)C11—C101.396 (2)
N2—H210.89 (2)C11—C121.385 (2)
N2—H220.86 (2)C11—H110.93
C1—C21.509 (2)C12—H120.93
C2—C31.395 (2)C13—C121.383 (2)
C2—C71.397 (2)C13—H130.93
C3—H30.93C14—C101.4956 (19)
O2—Mn1—O2i180.00 (4)C3—C4—H4119.5
O2—Mn1—O486.18 (5)C5—C4—H4119.5
O2i—Mn1—O493.82 (5)C4—C5—C8120.94 (15)
O2—Mn1—O4i93.82 (5)C6—C5—C4118.20 (14)
O2i—Mn1—O4i86.18 (5)C6—C5—C8120.86 (15)
O2—Mn1—N1i86.02 (4)C5—C6—H6119.5
O2i—Mn1—N1i93.98 (4)C7—C6—C5120.91 (14)
O2—Mn1—N193.98 (4)C7—C6—H6119.5
O2i—Mn1—N186.02 (4)C2—C7—H7119.6
O4—Mn1—O4i180.00 (5)C6—C7—C2120.74 (14)
O4—Mn1—N1i91.32 (4)C6—C7—H7119.6
O4i—Mn1—N1i88.68 (4)C5—C8—H8A109.5
O4—Mn1—N188.68 (4)C5—C8—H8B109.5
O4i—Mn1—N191.32 (4)C5—C8—H8C109.5
N1i—Mn1—N1180.00 (9)H8A—C8—H8B109.5
C1—O2—Mn1136.86 (10)H8A—C8—H8C109.5
Mn1—O4—H41122.2 (18)H8B—C8—H8C109.5
Mn1—O4—H42129.2 (16)N1—C9—C10123.52 (13)
H42—O4—H41107 (2)N1—C9—H9118.2
C9—N1—Mn1121.52 (10)C10—C9—H9118.2
C9—N1—C13117.56 (13)C9—C10—C11118.15 (13)
C13—N1—Mn1120.88 (10)C9—C10—C14118.12 (13)
C14—N2—H21124.4 (15)C11—C10—C14123.72 (13)
C14—N2—H22113.3 (16)C10—C11—H11120.7
H21—N2—H22121 (2)C12—C11—C10118.59 (14)
O1—C1—O2125.89 (14)C12—C11—H11120.7
O1—C1—C2118.59 (13)C11—C12—H12120.4
O2—C1—C2115.51 (13)C13—C12—C11119.26 (14)
C3—C2—C1120.90 (13)C13—C12—H12120.4
C3—C2—C7118.51 (14)N1—C13—C12122.90 (14)
C7—C2—C1120.56 (13)N1—C13—H13118.6
C2—C3—H3119.7C12—C13—H13118.6
C4—C3—C2120.59 (14)O3—C14—N2121.84 (14)
C4—C3—H3119.7O3—C14—C10119.46 (13)
C3—C4—C5121.05 (14)N2—C14—C10118.71 (13)
O4—Mn1—O2—C1−124.12 (16)O2—C1—C2—C7−169.99 (14)
O4i—Mn1—O2—C155.88 (16)C1—C2—C3—C4−178.83 (14)
N1i—Mn1—O2—C1144.28 (16)C7—C2—C3—C4−0.8 (2)
N1—Mn1—O2—C1−35.72 (16)C1—C2—C7—C6178.70 (15)
O2—Mn1—N1—C9−23.31 (12)C3—C2—C7—C60.6 (2)
O2i—Mn1—N1—C9156.69 (12)C5—C4—C3—C20.2 (2)
O2—Mn1—N1—C13154.04 (12)C3—C4—C5—C60.4 (2)
O2i—Mn1—N1—C13−25.96 (12)C3—C4—C5—C8−179.60 (15)
O4—Mn1—N1—C962.76 (11)C5—C6—C7—C20.0 (2)
O4i—Mn1—N1—C9−117.24 (11)C7—C6—C5—C4−0.6 (2)
O4—Mn1—N1—C13−119.89 (12)C7—C6—C5—C8179.46 (15)
O4i—Mn1—N1—C1360.11 (12)N1—C9—C10—C111.2 (2)
Mn1—O2—C1—O1−26.6 (3)N1—C9—C10—C14−177.98 (13)
Mn1—O2—C1—C2153.01 (12)C12—C11—C10—C9−0.1 (2)
Mn1—N1—C9—C10176.18 (11)C12—C11—C10—C14179.01 (15)
C13—N1—C9—C10−1.3 (2)C10—C11—C12—C13−0.8 (2)
Mn1—N1—C13—C12−177.22 (13)N1—C13—C12—C110.8 (3)
C9—N1—C13—C120.2 (2)O3—C14—C10—C9−9.9 (2)
O1—C1—C2—C3−172.31 (14)O3—C14—C10—C11170.95 (15)
O1—C1—C2—C79.7 (2)N2—C14—C10—C9170.04 (14)
O2—C1—C2—C38.0 (2)N2—C14—C10—C11−9.1 (2)
Cg1 and Cg2 are the centroids of the C2-C7 andN1/C9-C13 rings, respectively.
D—H···AD—HH···AD···AD—H···A
N2—H21···O1ii0.88 (3)1.97 (3)2.8456 (19)174 (2)
N2—H22···O3iii0.86 (3)2.09 (3)2.952 (2)172 (3)
O4—H42···O3iv0.90 (3)1.83 (3)2.7071 (19)164 (3)
C11—H11···O1ii0.932.333.200 (2)156
O4—H41···Cg1v0.91 (2)2.33 (2)3.141 (2)149 (3)
C4—H4···Cg2v0.932.803.490 (2)132
Table 1

Selected bond lengths (Å)

Mn1—O22.1036 (11)
Mn1—O42.1924 (12)
Mn1—N12.2947 (13)
Table 2

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C2-C7 andN1/C9-C13 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H21⋯O1i0.88 (3)1.97 (3)2.8456 (19)174 (2)
N2—H22⋯O3ii0.86 (3)2.09 (3)2.952 (2)172 (3)
O4—H42⋯O3iii0.90 (3)1.83 (3)2.7071 (19)164 (3)
C11—H11⋯O1i0.932.333.200 (2)156
O4—H41⋯Cg1iv0.91 (2)2.33 (2)3.141 (2)149 (3)
C4—H4⋯Cg2iv0.932.803.490 (2)132

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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3.  Diaqua-bis(2-chloro-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)manganese(II).

Authors:  T Hökelek; H Dal; B Tercan; F E Ozbek; H Necefoğlu
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4.  Diaqua-bis(2-bromo-benzoato-κO)bis-(nicotinamide-κN)zinc(II).

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5.  Diaqua-bis(2-chloro-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

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6.  Diaqua-bis(4-methyl-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-03

7.  Structure validation in chemical crystallography.

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