Literature DB >> 21582108

Tetra-aqua-bis(nicotinamide-κN)cobalt(II) bis-(2-fluoro-benzoate).

F Elif Ozbek, Barış Tercan, Ertan Sahin, Hacali Necefoğlu, Tuncer Hökelek.   

Abstract

The title complex, [Co(C(6)H(6)N(2)O)(2)(H(2)O)(4)](C(7)H(4)FO(2))(2), contains one Co(II) atom (site symmetry ), two monodentate nicotin-amide (NA) ligands, four coordinated water mol-ecules and two 2-fluoro-benzoate (FB) anions. The four O atoms in the equatorial plane around the Co atom form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two N atoms of the NA ligands in the axial positions. The dihedral angle between the carboxyl group and the adjacent benzene ring is 29.8 (3)°, while the pyridine and benzene rings are oriented at a dihedral angle of 7.97 (12)°. In the crystal structure, mol-ecules are linked by O-H⋯O, N-H⋯O and N-H⋯F hydrogen bonds, forming an infinite three-dimensional network. π-π Contacts between the pyridine and benzene rings [centroid-centroid distance = 3.673 (3) Å] may further stabilize the crystal structure.

Entities:  

Year:  2009        PMID: 21582108      PMCID: PMC2968619          DOI: 10.1107/S1600536809006771

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Antolini et al. (1982 ▶); Krishnamachari (1974 ▶); Nadzhafov et al. (1981 ▶). For related structures, see: Hökelek & Necefoğlu (1996 ▶, 1998 ▶); Hökelek et al. (1997 ▶, 2007 ▶); Necefoğlu et al. (2002 ▶); Tercan et al. (2009 ▶).

Experimental

Crystal data

[Co(C6H6N2O)2(H2O)4](C7H4FO2)2 M = 653.45 Triclinic, a = 7.2913 (2) Å b = 7.4522 (4) Å c = 14.4853 (5) Å α = 82.160 (2)° β = 77.275 (3)° γ = 63.740 (3)° V = 687.83 (5) Å3 Z = 1 Mo Kα radiation μ = 0.70 mm−1 T = 294 K 0.35 × 0.25 × 0.20 mm

Data collection

Rigaku R-AXIS RAPID-S diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.807, T max = 0.865 14875 measured reflections 2817 independent reflections 2679 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.122 S = 1.08 2817 reflections 220 parameters 10 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.37 e Å−3 Δρmin = −0.42 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809006771/xu2482sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809006771/xu2482Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C6H6N2O)2(H2O)4](C7H4FO2)2Z = 1
Mr = 653.45F(000) = 337
Triclinic, P1Dx = 1.578 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.2913 (2) ÅCell parameters from 4045 reflections
b = 7.4522 (4) Åθ = 2.9–26.4°
c = 14.4853 (5) ŵ = 0.70 mm1
α = 82.160 (2)°T = 294 K
β = 77.275 (3)°Prism, pink
γ = 63.740 (3)°0.35 × 0.25 × 0.20 mm
V = 687.83 (5) Å3
Rigaku R-AXIS RAPID-S diffractometer2817 independent reflections
Radiation source: fine-focus sealed tube2679 reflections with I > 2σ(I)
graphiteRint = 0.044
ω scansθmax = 26.4°, θmin = 2.9°
Absorption correction: multi-scan (Blessing, 1995)h = −9→9
Tmin = 0.807, Tmax = 0.865k = −8→9
14875 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0649P)2 + 0.4285P] where P = (Fo2 + 2Fc2)/3
2817 reflections(Δ/σ)max < 0.001
220 parametersΔρmax = 1.37 e Å3
10 restraintsΔρmin = −0.42 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.50000.50000.50000.0306 (2)
F10.6929 (4)0.9615 (4)0.85873 (18)0.0632 (7)
O10.2777 (4)0.4281 (5)0.97121 (18)0.0544 (7)
O20.9068 (4)0.8007 (4)0.68460 (17)0.0433 (6)
O30.7033 (4)0.9537 (4)0.57755 (17)0.0414 (6)
O40.6387 (4)0.7065 (4)0.46282 (17)0.0398 (6)
H410.695 (6)0.741 (6)0.504 (3)0.057 (13)*
H420.529 (7)0.818 (6)0.449 (4)0.10 (2)*
O50.7856 (4)0.2570 (4)0.46679 (18)0.0450 (6)
H510.896 (5)0.227 (7)0.419 (3)0.070 (15)*
H520.799 (7)0.140 (5)0.499 (3)0.053 (12)*
N10.5506 (4)0.4540 (4)0.64340 (18)0.0334 (6)
N20.0471 (5)0.5743 (5)0.8720 (2)0.0460 (8)
H21−0.056 (5)0.588 (6)0.918 (2)0.047 (11)*
H220.019 (6)0.640 (5)0.819 (2)0.041 (10)*
C10.3949 (5)0.4742 (5)0.7168 (2)0.0337 (7)
H10.26790.49260.70420.040*
C20.4139 (5)0.4691 (5)0.8104 (2)0.0348 (7)
C30.6044 (6)0.4392 (5)0.8293 (2)0.0393 (8)
H30.62290.43400.89130.047*
C40.7650 (5)0.4175 (5)0.7546 (3)0.0408 (8)
H40.89370.39810.76540.049*
C50.7332 (5)0.4248 (5)0.6634 (2)0.0380 (7)
H50.84340.40890.61350.046*
C60.2384 (6)0.4906 (6)0.8914 (2)0.0393 (8)
C70.7326 (5)0.8934 (5)0.6617 (2)0.0326 (7)
C80.5407 (5)0.9340 (5)0.7363 (2)0.0330 (7)
C90.3610 (5)0.9450 (5)0.7114 (3)0.0381 (7)
H90.36130.93040.64860.046*
C100.1833 (6)0.9768 (6)0.7779 (3)0.0474 (9)
H100.06630.98130.76010.057*
C110.1798 (7)1.0021 (7)0.8708 (3)0.0572 (11)
H110.05931.02610.91550.069*
C120.3539 (7)0.9920 (7)0.8980 (3)0.0544 (10)
H120.35261.00700.96090.065*
C130.5296 (6)0.9593 (6)0.8305 (2)0.0411 (8)
U11U22U33U12U13U23
Co10.0292 (3)0.0361 (4)0.0231 (3)−0.0124 (3)−0.0019 (2)−0.0010 (2)
F10.0543 (14)0.0868 (19)0.0507 (14)−0.0276 (14)−0.0144 (11)−0.0109 (13)
O10.0510 (16)0.084 (2)0.0263 (13)−0.0306 (15)−0.0069 (11)0.0080 (13)
O20.0319 (12)0.0595 (16)0.0341 (13)−0.0166 (11)−0.0066 (10)0.0025 (11)
O30.0418 (13)0.0504 (14)0.0300 (12)−0.0196 (11)−0.0077 (10)0.0065 (10)
O40.0449 (14)0.0440 (14)0.0350 (13)−0.0226 (12)−0.0102 (11)0.0017 (10)
O50.0385 (14)0.0435 (14)0.0371 (14)−0.0100 (11)0.0063 (11)0.0005 (11)
N10.0340 (14)0.0389 (15)0.0252 (13)−0.0145 (12)−0.0041 (10)−0.0003 (11)
N20.0397 (17)0.063 (2)0.0298 (16)−0.0209 (15)−0.0032 (13)0.0059 (14)
C10.0331 (16)0.0400 (17)0.0272 (15)−0.0151 (14)−0.0060 (12)−0.0001 (13)
C20.0388 (17)0.0374 (17)0.0269 (15)−0.0161 (14)−0.0057 (13)0.0014 (13)
C30.0453 (19)0.0452 (19)0.0297 (16)−0.0196 (16)−0.0137 (14)0.0028 (14)
C40.0348 (17)0.047 (2)0.0424 (19)−0.0175 (15)−0.0128 (14)0.0020 (15)
C50.0325 (16)0.0429 (18)0.0353 (17)−0.0147 (14)−0.0032 (13)−0.0005 (14)
C60.048 (2)0.048 (2)0.0246 (16)−0.0241 (17)−0.0045 (14)0.0009 (14)
C70.0362 (17)0.0342 (16)0.0306 (16)−0.0177 (14)−0.0068 (13)−0.0004 (12)
C80.0335 (16)0.0317 (16)0.0322 (16)−0.0137 (13)−0.0052 (13)0.0012 (12)
C90.0386 (18)0.0392 (18)0.0396 (18)−0.0188 (15)−0.0092 (14)0.0000 (14)
C100.0323 (18)0.050 (2)0.060 (2)−0.0193 (16)−0.0063 (16)0.0021 (18)
C110.042 (2)0.068 (3)0.052 (2)−0.022 (2)0.0101 (18)−0.008 (2)
C120.051 (2)0.070 (3)0.035 (2)−0.022 (2)0.0032 (17)−0.0094 (18)
C130.0383 (18)0.047 (2)0.0354 (18)−0.0158 (16)−0.0067 (14)−0.0024 (15)
Co1—O4i2.143 (3)C2—C11.387 (4)
Co1—O42.143 (3)C2—C31.390 (5)
Co1—O5i2.075 (3)C3—H30.9300
Co1—O52.075 (3)C4—C31.375 (5)
Co1—N12.145 (3)C4—H40.9300
Co1—N1i2.145 (3)C5—C41.381 (5)
F1—C131.348 (4)C5—H50.9300
O1—C61.232 (4)C6—C21.499 (5)
O2—C71.244 (4)C7—C81.505 (5)
O3—C71.270 (4)C8—C91.399 (5)
O4—H410.91 (5)C8—C131.384 (5)
O4—H420.90 (3)C9—C101.379 (5)
O5—H510.90 (4)C9—H90.9300
O5—H520.91 (2)C10—H100.9300
N1—C11.342 (4)C11—C101.377 (6)
N1—C51.342 (4)C11—H110.9300
N2—C61.330 (5)C12—C111.378 (6)
N2—H210.87 (2)C12—C131.376 (5)
N2—H220.87 (2)C12—H120.9300
C1—H10.9300
O4i—Co1—O4180.0C2—C3—H3120.6
O4i—Co1—N186.31 (10)C4—C3—C2118.7 (3)
O4—Co1—N193.69 (10)C4—C3—H3120.6
O4i—Co1—N1i93.69 (10)C3—C4—C5119.3 (3)
O4—Co1—N1i86.31 (10)C3—C4—H4120.3
O5i—Co1—O4i91.75 (12)C5—C4—H4120.3
O5—Co1—O4i88.25 (12)N1—C5—C4123.0 (3)
O5i—Co1—O488.25 (12)N1—C5—H5118.5
O5—Co1—O491.75 (12)C4—C5—H5118.5
O5i—Co1—O5180.0O1—C6—N2123.5 (3)
O5i—Co1—N192.59 (11)O1—C6—C2119.1 (3)
O5—Co1—N187.41 (11)N2—C6—C2117.3 (3)
O5i—Co1—N1i87.41 (11)O2—C7—O3124.3 (3)
O5—Co1—N1i92.59 (11)O2—C7—C8119.3 (3)
N1—Co1—N1i180.000 (1)O3—C7—C8116.3 (3)
Co1—O4—H41124 (3)C9—C8—C7119.6 (3)
Co1—O4—H42101 (4)C13—C8—C7123.9 (3)
H41—O4—H42106 (3)C13—C8—C9116.5 (3)
Co1—O5—H51136 (3)C8—C9—H9119.2
Co1—O5—H52116 (3)C10—C9—C8121.5 (3)
H51—O5—H52107 (3)C10—C9—H9119.2
C1—N1—Co1121.3 (2)C9—C10—H10120.1
C5—N1—C1117.3 (3)C11—C10—C9119.7 (4)
C5—N1—Co1121.1 (2)C11—C10—H10120.1
C6—N2—H21118 (3)C10—C11—C12120.4 (4)
C6—N2—H22122 (3)C10—C11—H11119.8
H21—N2—H22118 (4)C12—C11—H11119.8
N1—C1—C2123.3 (3)C11—C12—H12120.6
N1—C1—H1118.3C13—C12—C11118.8 (4)
C2—C1—H1118.3C13—C12—H12120.6
C1—C2—C3118.4 (3)F1—C13—C12117.1 (3)
C1—C2—C6122.5 (3)F1—C13—C8119.8 (3)
C3—C2—C6119.1 (3)C12—C13—C8123.0 (4)
O4i—Co1—N1—C1−51.9 (3)O1—C6—C2—C3−19.9 (5)
O4—Co1—N1—C1128.1 (3)N2—C6—C2—C1−20.0 (5)
O4i—Co1—N1—C5135.3 (3)N2—C6—C2—C3161.2 (3)
O4—Co1—N1—C5−44.7 (3)O2—C7—C8—C9−149.0 (3)
O5i—Co1—N1—C139.7 (3)O2—C7—C8—C1330.0 (5)
O5—Co1—N1—C1−140.3 (3)O3—C7—C8—C929.2 (4)
O5i—Co1—N1—C5−133.1 (3)O3—C7—C8—C13−151.7 (3)
O5—Co1—N1—C546.9 (3)C7—C8—C9—C10178.3 (3)
Co1—N1—C1—C2−172.2 (3)C13—C8—C9—C10−0.8 (5)
C5—N1—C1—C20.9 (5)C7—C8—C13—F14.5 (5)
Co1—N1—C5—C4172.4 (3)C7—C8—C13—C12−178.5 (4)
C1—N1—C5—C4−0.8 (5)C9—C8—C13—F1−176.4 (3)
C3—C2—C1—N1−0.8 (5)C9—C8—C13—C120.5 (6)
C6—C2—C1—N1−179.5 (3)C8—C9—C10—C111.1 (6)
C1—C2—C3—C40.5 (5)C12—C11—C10—C9−1.2 (7)
C6—C2—C3—C4179.3 (3)C11—C12—C13—F1176.4 (4)
C5—C4—C3—C2−0.4 (5)C11—C12—C13—C8−0.6 (7)
N1—C5—C4—C30.5 (6)C13—C12—C11—C101.0 (7)
O1—C6—C2—C1158.9 (4)
D—H···AD—HH···AD···AD—H···A
N2—H21···O1ii0.87 (2)2.04 (3)2.902 (5)171 (4)
N2—H22···F1iii0.87 (2)2.54 (4)2.916 (5)107 (2)
N2—H22···O2iii0.87 (2)2.26 (3)3.116 (5)172 (4)
O4—H41···O30.91 (5)2.06 (4)2.885 (4)151 (4)
O4—H42···O3iv0.90 (3)1.86 (5)2.761 (4)178 (5)
O5—H51···O2v0.90 (4)1.80 (4)2.695 (4)172 (4)
O5—H52···O3vi0.91 (2)1.95 (4)2.798 (4)156 (4)
Co1—O42.143 (3)
Co1—O52.075 (3)
Co1—N12.145 (3)
O4—Co1—N193.69 (10)
O4—Co1—N1i86.31 (10)
O5i—Co1—N192.59 (11)
O5—Co1—N187.41 (11)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H21⋯O1ii0.87 (2)2.04 (3)2.902 (5)171 (4)
N2—H22⋯F1iii0.87 (2)2.54 (4)2.916 (5)107 (2)
N2—H22⋯O2iii0.87 (2)2.26 (3)3.116 (5)172 (4)
O4—H41⋯O30.91 (5)2.06 (4)2.885 (4)151 (4)
O4—H42⋯O3iv0.90 (3)1.86 (5)2.761 (4)178 (5)
O5—H51⋯O2v0.90 (4)1.80 (4)2.695 (4)172 (4)
O5—H52⋯O3vi0.91 (2)1.95 (4)2.798 (4)156 (4)

Symmetry codes: (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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2.  Some aspects of copper metabolism in pellagra.

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Journal:  Am J Clin Nutr       Date:  1974-02       Impact factor: 7.045

3.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

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Authors:  Tuncer Hökelek; Filiz Yılmaz; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-13

2.  Diaqua-bis[4-(dimethyl-amino)benzoato-κO](isonicotinamide-κN)manganese(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; Ozgür Aybirdi; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

3.  Diaqua-bis(2-chloro-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-31

4.  Diaqua-bis(2-bromo-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Filiz Yılmaz; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-13

5.  Di-aqua-bis-(nicotinamide-κN (1))bis-(thio-cyanato-κN)nickel(II).

Authors:  Deepanjali Pandey; Shahid S Narvi; Gopal K Mehrotra; Raymond J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-16

6.  Di-aqua-bis-(nicotinamide-κN (1))bis-(thiocyanato-κS)cobalt(II).

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