Literature DB >> 21581356

2,4-Bis(2-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

P Parthiban, V Ramkumar, Min Sung Kim, Se Mo Son, Yeon Tae Jeong.   

Abstract

In the mol-ecular structure of the title compound, C(20)H(19)Br(2)NO, the fused six-membered heterocyclic and cyclo-hexane rings adopt a twin-chair conformation with equatorial orientations of all the substituents. Both the ortho-bromo substituents of the benzene rings are oriented towards the carbonyl group; the dihedral angle between the ring planes is 29.13 (3)°. In the crystal structure, the N-H group does not participate in any hydrogen bonds.

Entities:  

Year:  2008        PMID: 21581356      PMCID: PMC2959882          DOI: 10.1107/S1600536808037501

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For 3-aza­bicyclo­nonan-9-ones and their significance as bio-active mol­ecules, see: Barker et al. (2005 ▶); Jeyaraman & Avila (1981 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶); Web & Becker (1967 ▶). For a similiar structure see; Parthiban et al. (2008 ▶).

Experimental

Crystal data

C20H19Br2NO M = 449.18 Triclinic, a = 7.8389 (3) Å b = 10.5770 (3) Å c = 11.0274 (3) Å α = 101.099 (2)° β = 93.725 (2)° γ = 97.399 (1)° V = 885.94 (5) Å3 Z = 2 Mo Kα radiation μ = 4.58 mm−1 T = 298 (2) K 0.45 × 0.38 × 0.35 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.232, T max = 0.297 (expected range = 0.157–0.201) 10959 measured reflections 4098 independent reflections 3266 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.060 S = 1.00 4098 reflections 221 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.58 e Å−3 Δρmin = −0.56 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808037501/hb2843sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037501/hb2843Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H19Br2NOZ = 2
Mr = 449.18F000 = 448
Triclinic, P1Dx = 1.684 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 7.8389 (3) ÅCell parameters from 5642 reflections
b = 10.5770 (3) Åθ = 2.5–28.2º
c = 11.0274 (3) ŵ = 4.58 mm1
α = 101.099 (2)ºT = 298 (2) K
β = 93.725 (2)ºBlock, colourless
γ = 97.399 (1)º0.45 × 0.38 × 0.35 mm
V = 885.94 (5) Å3
Bruker APEXII CCD diffractometer4098 independent reflections
Radiation source: fine-focus sealed tube3266 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.017
T = 298(2) Kθmax = 28.3º
ω scansθmin = 1.9º
Absorption correction: Multi-scan(SADABS; Bruker, 1999)h = −10→10
Tmin = 0.232, Tmax = 0.297k = −13→13
10959 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.060  w = 1/[σ2(Fo2) + (0.0207P)2 + 0.5638P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.002
4098 reflectionsΔρmax = 0.58 e Å3
221 parametersΔρmin = −0.56 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br1−0.00438 (3)0.47719 (2)0.77681 (2)0.05065 (8)
Br20.16949 (3)1.23193 (3)1.01448 (2)0.06070 (9)
C10.2124 (2)0.74756 (18)0.75331 (18)0.0301 (4)
H10.14370.73700.82280.036*
C20.0889 (2)0.76537 (19)0.64395 (19)0.0344 (4)
H2−0.00490.69180.62540.041*
C30.1735 (3)0.7773 (2)0.5238 (2)0.0428 (5)
H3A0.22940.70110.49800.051*
H3B0.08390.77780.45910.051*
C40.3064 (3)0.8987 (2)0.5360 (2)0.0432 (5)
H4A0.41190.88650.58060.052*
H4B0.33330.91020.45390.052*
C50.2434 (3)1.0214 (2)0.60396 (19)0.0392 (5)
H5A0.16471.05000.54680.047*
H5B0.34181.08950.62800.047*
C60.1515 (2)1.00528 (19)0.72040 (18)0.0331 (4)
H60.09671.08280.74790.040*
C70.2692 (2)0.98341 (18)0.83118 (17)0.0294 (4)
H70.19870.97470.90010.035*
C80.0132 (2)0.8886 (2)0.68529 (18)0.0342 (4)
C90.3014 (2)0.62834 (18)0.72007 (17)0.0304 (4)
C100.4692 (3)0.6383 (2)0.6847 (2)0.0389 (5)
H100.52650.71940.67960.047*
C110.5525 (3)0.5302 (2)0.6570 (2)0.0495 (6)
H110.66410.53920.63280.059*
C120.4711 (3)0.4095 (2)0.6651 (2)0.0556 (6)
H120.52800.33710.64720.067*
C130.3055 (3)0.3958 (2)0.6995 (2)0.0482 (6)
H130.24960.31420.70470.058*
C140.2228 (3)0.50413 (19)0.72632 (19)0.0350 (4)
C150.4125 (2)1.09742 (18)0.87430 (17)0.0290 (4)
C160.3860 (3)1.21258 (19)0.95107 (18)0.0337 (4)
C170.5159 (3)1.3181 (2)0.9863 (2)0.0436 (5)
H170.49461.39381.03800.052*
C180.6757 (3)1.3104 (2)0.9446 (2)0.0499 (6)
H180.76291.38120.96700.060*
C190.7071 (3)1.1976 (2)0.8696 (2)0.0482 (6)
H190.81611.19200.84210.058*
C200.5772 (3)1.0923 (2)0.8347 (2)0.0381 (5)
H200.60031.01660.78390.046*
N10.3422 (2)0.86343 (15)0.79409 (16)0.0304 (4)
O1−0.13950 (19)0.89419 (17)0.68681 (16)0.0521 (4)
H1A0.407 (3)0.851 (2)0.850 (2)0.040 (7)*
U11U22U33U12U13U23
Br10.04366 (13)0.03775 (13)0.06740 (17)−0.00469 (9)0.01281 (11)0.00737 (11)
Br20.05389 (15)0.06429 (18)0.05949 (17)0.02181 (12)0.01497 (12)−0.01039 (13)
C10.0296 (9)0.0256 (10)0.0349 (10)0.0042 (7)0.0038 (8)0.0056 (8)
C20.0286 (9)0.0300 (10)0.0415 (11)0.0019 (8)−0.0038 (8)0.0035 (9)
C30.0511 (13)0.0398 (12)0.0351 (11)0.0125 (10)−0.0022 (10)−0.0001 (9)
C40.0505 (13)0.0492 (13)0.0325 (11)0.0104 (10)0.0097 (9)0.0107 (10)
C50.0441 (11)0.0369 (12)0.0386 (12)0.0063 (9)−0.0008 (9)0.0138 (9)
C60.0326 (10)0.0299 (10)0.0371 (11)0.0102 (8)0.0012 (8)0.0046 (8)
C70.0300 (9)0.0276 (10)0.0302 (10)0.0044 (7)0.0033 (7)0.0049 (8)
C80.0310 (9)0.0405 (12)0.0327 (11)0.0088 (8)−0.0003 (8)0.0100 (9)
C90.0335 (9)0.0278 (10)0.0295 (10)0.0060 (8)0.0003 (8)0.0046 (8)
C100.0357 (10)0.0380 (12)0.0448 (12)0.0081 (9)0.0059 (9)0.0104 (9)
C110.0417 (12)0.0553 (15)0.0575 (15)0.0220 (11)0.0123 (11)0.0135 (12)
C120.0657 (16)0.0446 (14)0.0637 (16)0.0311 (12)0.0140 (13)0.0109 (12)
C130.0608 (15)0.0297 (12)0.0551 (14)0.0101 (10)0.0065 (11)0.0083 (10)
C140.0371 (10)0.0304 (10)0.0362 (11)0.0041 (8)0.0025 (8)0.0038 (8)
C150.0314 (9)0.0280 (10)0.0284 (10)0.0053 (8)0.0005 (7)0.0079 (8)
C160.0403 (10)0.0322 (11)0.0297 (10)0.0100 (8)0.0010 (8)0.0062 (8)
C170.0646 (15)0.0278 (11)0.0353 (12)0.0034 (10)−0.0054 (10)0.0047 (9)
C180.0547 (14)0.0427 (13)0.0455 (13)−0.0154 (11)−0.0072 (11)0.0108 (11)
C190.0346 (11)0.0573 (15)0.0500 (14)−0.0043 (10)0.0028 (10)0.0117 (12)
C200.0337 (10)0.0375 (11)0.0411 (12)0.0048 (9)0.0047 (9)0.0029 (9)
N10.0292 (8)0.0249 (8)0.0362 (9)0.0055 (6)−0.0050 (7)0.0053 (7)
O10.0292 (7)0.0588 (11)0.0693 (11)0.0119 (7)0.0028 (7)0.0120 (9)
Br1—C141.903 (2)C7—H70.9800
Br2—C161.897 (2)C8—O11.207 (2)
C1—N11.465 (2)C9—C101.393 (3)
C1—C91.515 (3)C9—C141.394 (3)
C1—C21.552 (3)C10—C111.382 (3)
C1—H10.9800C10—H100.9300
C2—C81.505 (3)C11—C121.373 (4)
C2—C31.539 (3)C11—H110.9300
C2—H20.9800C12—C131.373 (3)
C3—C41.524 (3)C12—H120.9300
C3—H3A0.9700C13—C141.381 (3)
C3—H3B0.9700C13—H130.9300
C4—C51.525 (3)C15—C201.393 (3)
C4—H4A0.9700C15—C161.391 (3)
C4—H4B0.9700C16—C171.387 (3)
C5—C61.539 (3)C17—C181.369 (3)
C5—H5A0.9700C17—H170.9300
C5—H5B0.9700C18—C191.375 (4)
C6—C81.506 (3)C18—H180.9300
C6—C71.554 (3)C19—C201.385 (3)
C6—H60.9800C19—H190.9300
C7—N11.457 (2)C20—H200.9300
C7—C151.518 (2)N1—H1A0.81 (2)
N1—C1—C9109.63 (15)O1—C8—C2124.48 (19)
N1—C1—C2110.38 (16)O1—C8—C6123.98 (19)
C9—C1—C2112.32 (16)C2—C8—C6111.51 (16)
N1—C1—H1108.1C10—C9—C14116.51 (18)
C9—C1—H1108.1C10—C9—C1121.26 (17)
C2—C1—H1108.1C14—C9—C1122.21 (17)
C8—C2—C3107.21 (17)C11—C10—C9121.5 (2)
C8—C2—C1107.83 (16)C11—C10—H10119.3
C3—C2—C1115.42 (16)C9—C10—H10119.3
C8—C2—H2108.7C12—C11—C10120.3 (2)
C3—C2—H2108.7C12—C11—H11119.9
C1—C2—H2108.7C10—C11—H11119.9
C4—C3—C2114.03 (17)C13—C12—C11119.9 (2)
C4—C3—H3A108.7C13—C12—H12120.1
C2—C3—H3A108.7C11—C12—H12120.1
C4—C3—H3B108.7C12—C13—C14119.5 (2)
C2—C3—H3B108.7C12—C13—H13120.3
H3A—C3—H3B107.6C14—C13—H13120.3
C5—C4—C3112.67 (18)C13—C14—C9122.3 (2)
C5—C4—H4A109.1C13—C14—Br1116.76 (16)
C3—C4—H4A109.1C9—C14—Br1120.89 (15)
C5—C4—H4B109.1C20—C15—C16116.80 (18)
C3—C4—H4B109.1C20—C15—C7120.81 (17)
H4A—C4—H4B107.8C16—C15—C7122.36 (17)
C4—C5—C6114.82 (17)C17—C16—C15122.0 (2)
C4—C5—H5A108.6C17—C16—Br2116.64 (16)
C6—C5—H5A108.6C15—C16—Br2121.32 (15)
C4—C5—H5B108.6C18—C17—C16119.7 (2)
C6—C5—H5B108.6C18—C17—H17120.2
H5A—C5—H5B107.5C16—C17—H17120.2
C8—C6—C5108.13 (16)C17—C18—C19119.9 (2)
C8—C6—C7107.18 (16)C17—C18—H18120.0
C5—C6—C7115.25 (16)C19—C18—H18120.0
C8—C6—H6108.7C18—C19—C20120.3 (2)
C5—C6—H6108.7C18—C19—H19119.9
C7—C6—H6108.7C20—C19—H19119.9
N1—C7—C15110.21 (15)C19—C20—C15121.3 (2)
N1—C7—C6109.31 (15)C19—C20—H20119.3
C15—C7—C6111.09 (15)C15—C20—H20119.3
N1—C7—H7108.7C7—N1—C1113.89 (15)
C15—C7—H7108.7C7—N1—H1A111.0 (16)
C6—C7—H7108.7C1—N1—H1A108.6 (16)
N1—C1—C2—C8−55.2 (2)C9—C10—C11—C12−0.6 (4)
C9—C1—C2—C8−177.89 (16)C10—C11—C12—C130.7 (4)
N1—C1—C2—C364.6 (2)C11—C12—C13—C14−0.3 (4)
C9—C1—C2—C3−58.1 (2)C12—C13—C14—C9−0.2 (3)
C8—C2—C3—C455.1 (2)C12—C13—C14—Br1−178.65 (19)
C1—C2—C3—C4−65.0 (2)C10—C9—C14—C130.2 (3)
C2—C3—C4—C5−45.4 (3)C1—C9—C14—C13−178.10 (19)
C3—C4—C5—C643.4 (3)C10—C9—C14—Br1178.65 (15)
C4—C5—C6—C8−51.3 (2)C1—C9—C14—Br10.3 (3)
C4—C5—C6—C768.6 (2)N1—C7—C15—C2023.6 (2)
C8—C6—C7—N158.74 (19)C6—C7—C15—C20−97.7 (2)
C5—C6—C7—N1−61.6 (2)N1—C7—C15—C16−158.48 (18)
C8—C6—C7—C15−179.43 (15)C6—C7—C15—C1680.2 (2)
C5—C6—C7—C1560.2 (2)C20—C15—C16—C170.5 (3)
C3—C2—C8—O1113.0 (2)C7—C15—C16—C17−177.53 (18)
C1—C2—C8—O1−122.1 (2)C20—C15—C16—Br2−178.76 (15)
C3—C2—C8—C6−64.9 (2)C7—C15—C16—Br23.2 (3)
C1—C2—C8—C659.9 (2)C15—C16—C17—C180.3 (3)
C5—C6—C8—O1−114.9 (2)Br2—C16—C17—C18179.52 (17)
C7—C6—C8—O1120.3 (2)C16—C17—C18—C19−0.9 (3)
C5—C6—C8—C263.1 (2)C17—C18—C19—C200.8 (4)
C7—C6—C8—C2−61.7 (2)C18—C19—C20—C150.0 (3)
N1—C1—C9—C10−24.4 (3)C16—C15—C20—C19−0.6 (3)
C2—C1—C9—C1098.7 (2)C7—C15—C20—C19177.4 (2)
N1—C1—C9—C14153.82 (18)C15—C7—N1—C1178.86 (15)
C2—C1—C9—C14−83.1 (2)C6—C7—N1—C1−58.8 (2)
C14—C9—C10—C110.2 (3)C9—C1—N1—C7−178.59 (16)
C1—C9—C10—C11178.5 (2)C2—C1—N1—C757.2 (2)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Methyllycaconitine analogues have mixed antagonist effects at nicotinic acetylcholine receptors.

Authors:  David Barker; Diana H-S Lin; Jane E Carland; Cindy P-Y Chu; Mary Chebib; Margaret A Brimble; G Paul Savage; Malcolm D McLeod
Journal:  Bioorg Med Chem       Date:  2005-07-15       Impact factor: 3.641

3.  2,4-Bis(2-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Kwon Taek Lim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26
  3 in total
  9 in total

1.  2,4-Bis(2-methoxy-phenyl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Se Mo Son; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-23

2.  2,4-Bis(3-methoxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-04

3.  2,4-Bis(4-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; S Amirthaganesan; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20

4.  2,4-Bis(4-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; S Kabilan; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25

5.  2,4-Bis(2-fluoro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-17

6.  1-Methyl-2,4-bis-(2-methoxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-18

7.  2,4-Bis(3-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; H D Santan; Jong Tae Kim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-25

8.  2,4-Bis(2-bromo-phen-yl)-7-tert-pentyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  Dong Ho Park; V Ramkumar; P Parthiban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-19

9.  Crystal structure of 2-(2,4-diphenyl-3-aza-bicyclo-[3.3.1]nonan-9-yl-idene)aceto-nitrile.

Authors:  K Priya; K Saravanan; S Kabilan; S Selvanayagam
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-09-26
  9 in total

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