Literature DB >> 21583207

2,4-Bis(4-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

P Parthiban, V Ramkumar, S Amirthaganesan, Yeon Tae Jeong.   

Abstract

The title compound, C(20)H(19)Br(2)NO, shows a chair-chair conformation for the aza-bicycle with an equatorial disposition of the 4-bromo-phenyl groups [dihedral angle between the aromatic rings = 16.48 (3)°]. In the crystal, a short BrBr contact [3.520 (4) Å] occurs and the structure is further stabilized by N-H⋯O hydrogen bonds and C-H⋯O inter-actions.

Entities:  

Year:  2009        PMID: 21583207      PMCID: PMC2969662          DOI: 10.1107/S1600536809017565

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the biological properties of 3-aza­bicyclo­nona­nes, see: Jeyaraman & Avila (1981 ▶); Hardick et al. (1996 ▶); Barker et al. (2005 ▶). For different conformations for the aza­bicycle, see: Parthiban et al. (2008a ▶,b ▶,c ▶,d ▶, 2009 ▶); Smith-Verdier et al. (1983 ▶); Padegimas & Kovacic (1972 ▶). For ring puckering analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C20H19Br2NO M = 449.18 Triclinic, a = 6.9415 (3) Å b = 10.4489 (4) Å c = 13.2888 (5) Å α = 101.542 (2)° β = 100.391 (2)° γ = 94.472 (2)° V = 922.34 (6) Å3 Z = 2 Mo Kα radiation μ = 4.40 mm−1 T = 298 K 0.38 × 0.25 × 0.20 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker 1999 ▶) T min = 0.280, T max = 0.415 12376 measured reflections 4036 independent reflections 2805 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.089 S = 1.02 4036 reflections 221 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.85 e Å−3 Δρmin = −0.92 e Å−3 Data collection: SMART (Bruker–Nonius, 2004 ▶); cell refinement: SAINT-Plus (Bruker–Nonius, 2004 ▶); data reduction: SAINT-Plus (Bruker–Nonius, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809017565/hb2967sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809017565/hb2967Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H19Br2NOZ = 2
Mr = 449.18F(000) = 448
Triclinic, P1Dx = 1.617 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.9415 (3) ÅCell parameters from 4458 reflections
b = 10.4489 (4) Åθ = 2.3–23.7°
c = 13.2888 (5) ŵ = 4.40 mm1
α = 101.542 (2)°T = 298 K
β = 100.391 (2)°Block, colourless
γ = 94.472 (2)°0.38 × 0.25 × 0.20 mm
V = 922.34 (6) Å3
Bruker SMART CCD diffractometer4036 independent reflections
Radiation source: fine-focus sealed tube2805 reflections with I > 2σ(I)
graphiteRint = 0.024
φ and ω scansθmax = 28.3°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker 1999)h = −9→9
Tmin = 0.280, Tmax = 0.415k = −13→10
12376 measured reflectionsl = −16→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0266P)2 + 1.1237P] where P = (Fo2 + 2Fc2)/3
4036 reflections(Δ/σ)max = 0.001
221 parametersΔρmax = 0.85 e Å3
0 restraintsΔρmin = −0.92 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.51212 (7)−0.32865 (4)0.04459 (3)0.07124 (16)
Br20.76344 (6)0.92093 (4)0.40986 (3)0.06669 (15)
C10.2024 (4)0.1542 (3)0.2864 (2)0.0314 (6)
H10.19880.14110.35710.038*
C2−0.0130 (4)0.1605 (3)0.2300 (2)0.0354 (7)
H2−0.09430.07920.22910.043*
C3−0.0360 (5)0.1813 (3)0.1177 (2)0.0469 (8)
H3A0.02420.11360.07710.056*
H3B−0.17540.17060.08640.056*
C40.0554 (5)0.3150 (4)0.1097 (3)0.0539 (9)
H4A0.19740.31580.11990.065*
H4B0.00800.32870.03990.065*
C50.0073 (5)0.4269 (3)0.1896 (3)0.0492 (8)
H5A−0.12790.44270.16690.059*
H5B0.09210.50610.19150.059*
C60.0320 (4)0.4019 (3)0.3006 (2)0.0381 (7)
H6−0.02040.47220.34460.046*
C70.2472 (4)0.3925 (3)0.3542 (2)0.0328 (6)
H70.24490.37820.42470.039*
C8−0.0841 (4)0.2732 (3)0.2963 (2)0.0359 (7)
C90.2870 (4)0.0391 (3)0.2290 (2)0.0317 (6)
C100.4256 (4)0.0528 (3)0.1678 (2)0.0365 (7)
H100.47210.13630.16180.044*
C110.4958 (4)−0.0566 (3)0.1153 (2)0.0405 (7)
H110.5920−0.04640.07610.049*
C120.4230 (5)−0.1791 (3)0.1214 (2)0.0410 (7)
C130.2850 (5)−0.1960 (3)0.1810 (3)0.0509 (9)
H130.2359−0.28000.18460.061*
C140.2202 (5)−0.0867 (3)0.2355 (3)0.0458 (8)
H140.1295−0.09780.27760.055*
C150.3781 (4)0.5192 (3)0.3658 (2)0.0324 (6)
C160.3485 (4)0.6307 (3)0.4353 (2)0.0385 (7)
H160.25010.62480.47390.046*
C170.4611 (4)0.7499 (3)0.4489 (2)0.0427 (7)
H170.43790.82380.49510.051*
C180.6087 (4)0.7574 (3)0.3925 (2)0.0402 (7)
C190.6428 (4)0.6494 (3)0.3236 (3)0.0438 (8)
H190.74290.65550.28620.053*
C200.5260 (4)0.5304 (3)0.3101 (2)0.0395 (7)
H200.54800.45720.26280.047*
N10.3217 (3)0.2793 (2)0.2964 (2)0.0328 (5)
O1−0.2151 (3)0.2611 (2)0.34451 (19)0.0541 (6)
H1A0.434 (5)0.275 (3)0.322 (2)0.039 (9)*
U11U22U33U12U13U23
Br10.1029 (3)0.0451 (3)0.0682 (3)0.0312 (2)0.0296 (2)−0.0015 (2)
Br20.0736 (3)0.0415 (2)0.0772 (3)−0.01884 (18)0.0181 (2)0.0021 (2)
C10.0309 (13)0.0280 (16)0.0342 (15)0.0023 (11)0.0088 (11)0.0031 (13)
C20.0268 (13)0.0318 (17)0.0449 (17)−0.0002 (11)0.0073 (12)0.0034 (14)
C30.0399 (17)0.053 (2)0.0409 (17)0.0099 (15)0.0012 (14)−0.0005 (16)
C40.0465 (18)0.075 (3)0.0428 (18)0.0069 (17)0.0072 (15)0.0215 (19)
C50.0419 (17)0.042 (2)0.061 (2)0.0033 (14)−0.0021 (15)0.0169 (18)
C60.0304 (14)0.0334 (18)0.0474 (17)0.0084 (12)0.0075 (13)−0.0002 (14)
C70.0303 (14)0.0303 (17)0.0354 (15)0.0046 (11)0.0072 (12)0.0004 (13)
C80.0250 (13)0.0402 (19)0.0393 (16)0.0052 (12)0.0051 (12)0.0018 (14)
C90.0292 (13)0.0279 (17)0.0355 (15)0.0033 (11)0.0039 (11)0.0035 (13)
C100.0367 (15)0.0267 (17)0.0438 (17)−0.0008 (12)0.0095 (13)0.0032 (14)
C110.0420 (16)0.039 (2)0.0412 (17)0.0065 (14)0.0151 (13)0.0026 (15)
C120.0487 (17)0.0314 (19)0.0393 (16)0.0148 (14)0.0050 (14)−0.0009 (14)
C130.061 (2)0.0243 (19)0.069 (2)0.0026 (15)0.0199 (18)0.0094 (17)
C140.0490 (18)0.035 (2)0.060 (2)0.0049 (14)0.0265 (16)0.0117 (16)
C150.0301 (14)0.0289 (17)0.0346 (15)0.0053 (11)0.0031 (12)0.0013 (13)
C160.0368 (15)0.0357 (19)0.0388 (16)0.0010 (13)0.0090 (13)−0.0019 (14)
C170.0474 (17)0.0328 (19)0.0413 (17)0.0047 (14)0.0062 (14)−0.0048 (14)
C180.0405 (16)0.0307 (18)0.0441 (17)−0.0013 (13)−0.0001 (13)0.0062 (15)
C190.0384 (16)0.041 (2)0.0535 (19)0.0016 (14)0.0173 (14)0.0080 (16)
C200.0381 (15)0.0325 (18)0.0466 (17)0.0059 (13)0.0133 (13)0.0005 (14)
N10.0245 (12)0.0277 (15)0.0420 (14)0.0035 (10)0.0055 (10)−0.0013 (11)
O10.0373 (12)0.0599 (16)0.0651 (15)0.0028 (10)0.0245 (11)0.0019 (13)
Br1—C121.899 (3)C7—H70.9800
Br2—C181.896 (3)C8—O11.216 (3)
C1—N11.461 (4)C9—C101.384 (4)
C1—C91.510 (4)C9—C141.384 (4)
C1—C21.560 (4)C10—C111.386 (4)
C1—H10.9800C10—H100.9300
C2—C81.497 (4)C11—C121.362 (4)
C2—C31.532 (4)C11—H110.9300
C2—H20.9800C12—C131.372 (5)
C3—C41.519 (5)C13—C141.377 (5)
C3—H3A0.9700C13—H130.9300
C3—H3B0.9700C14—H140.9300
C4—C51.516 (5)C15—C201.381 (4)
C4—H4A0.9700C15—C161.388 (4)
C4—H4B0.9700C16—C171.379 (4)
C5—C61.531 (5)C16—H160.9300
C5—H5A0.9700C17—C181.380 (4)
C5—H5B0.9700C17—H170.9300
C6—C81.498 (4)C18—C191.369 (4)
C6—C71.554 (4)C19—C201.392 (4)
C6—H60.9800C19—H190.9300
C7—N11.461 (4)C20—H200.9300
C7—C151.511 (4)N1—H1A0.80 (3)
N1—C1—C9112.3 (2)O1—C8—C2123.9 (3)
N1—C1—C2109.5 (2)O1—C8—C6124.0 (3)
C9—C1—C2110.5 (2)C2—C8—C6112.0 (2)
N1—C1—H1108.1C10—C9—C14118.0 (3)
C9—C1—H1108.1C10—C9—C1123.1 (3)
C2—C1—H1108.1C14—C9—C1118.8 (3)
C8—C2—C3109.2 (3)C9—C10—C11120.7 (3)
C8—C2—C1105.7 (2)C9—C10—H10119.7
C3—C2—C1115.4 (2)C11—C10—H10119.7
C8—C2—H2108.8C12—C11—C10119.6 (3)
C3—C2—H2108.8C12—C11—H11120.2
C1—C2—H2108.8C10—C11—H11120.2
C4—C3—C2114.2 (3)C11—C12—C13121.0 (3)
C4—C3—H3A108.7C11—C12—Br1119.4 (2)
C2—C3—H3A108.7C13—C12—Br1119.6 (2)
C4—C3—H3B108.7C12—C13—C14119.0 (3)
C2—C3—H3B108.7C12—C13—H13120.5
H3A—C3—H3B107.6C14—C13—H13120.5
C5—C4—C3112.7 (3)C13—C14—C9121.5 (3)
C5—C4—H4A109.1C13—C14—H14119.2
C3—C4—H4A109.1C9—C14—H14119.2
C5—C4—H4B109.1C20—C15—C16117.9 (3)
C3—C4—H4B109.1C20—C15—C7123.3 (3)
H4A—C4—H4B107.8C16—C15—C7118.8 (2)
C4—C5—C6114.0 (3)C17—C16—C15121.8 (3)
C4—C5—H5A108.7C17—C16—H16119.1
C6—C5—H5A108.7C15—C16—H16119.1
C4—C5—H5B108.7C16—C17—C18118.8 (3)
C6—C5—H5B108.7C16—C17—H17120.6
H5A—C5—H5B107.6C18—C17—H17120.6
C8—C6—C5108.9 (3)C19—C18—C17121.1 (3)
C8—C6—C7106.3 (2)C19—C18—Br2119.8 (2)
C5—C6—C7115.2 (2)C17—C18—Br2119.1 (2)
C8—C6—H6108.8C18—C19—C20119.3 (3)
C5—C6—H6108.8C18—C19—H19120.4
C7—C6—H6108.8C20—C19—H19120.4
N1—C7—C15112.1 (2)C15—C20—C19121.1 (3)
N1—C7—C6110.0 (2)C15—C20—H20119.4
C15—C7—C6111.1 (2)C19—C20—H20119.4
N1—C7—H7107.8C1—N1—C7113.8 (2)
C15—C7—H7107.8C1—N1—H1A110 (2)
C6—C7—H7107.8C7—N1—H1A111 (2)
N1—C1—C2—C8−58.5 (3)C1—C9—C10—C11−178.8 (3)
C9—C1—C2—C8177.2 (2)C9—C10—C11—C122.1 (5)
N1—C1—C2—C362.2 (3)C10—C11—C12—C13−1.8 (5)
C9—C1—C2—C3−62.1 (3)C10—C11—C12—Br1177.4 (2)
C8—C2—C3—C451.9 (3)C11—C12—C13—C14−0.1 (5)
C1—C2—C3—C4−66.9 (4)Br1—C12—C13—C14−179.4 (3)
C2—C3—C4—C5−45.1 (4)C12—C13—C14—C91.8 (5)
C3—C4—C5—C645.8 (4)C10—C9—C14—C13−1.5 (5)
C4—C5—C6—C8−53.2 (3)C1—C9—C14—C13176.9 (3)
C4—C5—C6—C766.0 (4)N1—C7—C15—C2012.5 (4)
C8—C6—C7—N156.8 (3)C6—C7—C15—C20−111.0 (3)
C5—C6—C7—N1−63.8 (3)N1—C7—C15—C16−167.8 (3)
C8—C6—C7—C15−178.4 (2)C6—C7—C15—C1668.6 (3)
C5—C6—C7—C1561.0 (3)C20—C15—C16—C170.4 (4)
C3—C2—C8—O1122.1 (3)C7—C15—C16—C17−179.2 (3)
C1—C2—C8—O1−113.2 (3)C15—C16—C17—C18−0.9 (5)
C3—C2—C8—C6−60.8 (3)C16—C17—C18—C190.6 (5)
C1—C2—C8—C663.9 (3)C16—C17—C18—Br2179.6 (2)
C5—C6—C8—O1−121.4 (3)C17—C18—C19—C200.1 (5)
C7—C6—C8—O1113.9 (3)Br2—C18—C19—C20−178.9 (2)
C5—C6—C8—C261.4 (3)C16—C15—C20—C190.4 (4)
C7—C6—C8—C2−63.2 (3)C7—C15—C20—C19180.0 (3)
N1—C1—C9—C10−17.2 (4)C18—C19—C20—C15−0.6 (5)
C2—C1—C9—C10105.4 (3)C9—C1—N1—C7−178.3 (2)
N1—C1—C9—C14164.3 (3)C2—C1—N1—C758.5 (3)
C2—C1—C9—C14−73.0 (3)C15—C7—N1—C1178.2 (2)
C14—C9—C10—C11−0.4 (4)C6—C7—N1—C1−57.6 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.80 (3)2.42 (3)3.191 (3)162 (3)
C16—H16···O1ii0.932.533.242 (3)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.80 (3)2.42 (3)3.191 (3)162 (3)
C16—H16⋯O1ii0.932.533.242 (3)133

Symmetry codes: (i) ; (ii) .

  8 in total

1.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Methyllycaconitine analogues have mixed antagonist effects at nicotinic acetylcholine receptors.

Authors:  David Barker; Diana H-S Lin; Jane E Carland; Cindy P-Y Chu; Mary Chebib; Margaret A Brimble; G Paul Savage; Malcolm D McLeod
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3.  Nudicauline and elatine as potent norditerpenoid ligands at rat neuronal alpha-bungarotoxin binding sites: importance of the 2-(methylsuccinimido)benzoyl moiety for neuronal nicotinic acetylcholine receptor binding.

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Journal:  J Med Chem       Date:  1996-11-22       Impact factor: 7.446

4.  2,4-Bis(2-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Kwon Taek Lim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26

5.  2,4-Bis(4-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; S Kabilan; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25

6.  2,4-Bis(2-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Se Mo Son; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-20

7.  2,4-Bis(3-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Kwon Taek Lim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-13

8.  2,4-Bis(4-fluoro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; H D Santan; Jong Tae Kim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06
  8 in total
  5 in total

1.  2,4-Bis(3-methoxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-04

2.  2,4-Bis(4-propoxyphen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-05

3.  2,4-Bis(4-but-oxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-16

4.  2,4-Bis(2-eth-oxy-phen-yl)-7-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Dong Ho Park; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-20

5.  Crystal structure of 1-[2,4-bis(4-methoxy-phenyl)-3-azabicyclo[3.3.1]nonan-3-yl]ethanone.

Authors:  V Shreevidhyaa Suressh; S Sathya; A Akila; S Ponnuswamy; G Usha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-10-24
  5 in total

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