Literature DB >> 21582559

2,4-Bis(3-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

P Parthiban, V Ramkumar, H D Santan, Jong Tae Kim, Yeon Tae Jeong.   

Abstract

In the mol-ecular structure of the title compound, C(20)H(19)Cl(2)NO, the bicyclic system adopts a twin-chair conformation with equatorial orientations of both substituents. The dihedral angle between the aromatic rings is 43.60 (2)° with respect to each other. The crystal structure is stabilized by weak N-H⋯O and strong C-H⋯O inter-actions.

Entities:  

Year:  2009        PMID: 21582559      PMCID: PMC2968799          DOI: 10.1107/S1600536809009945

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological significance, synthesis and stereochemistry of 3-aza­bicyclo­nonan-9-ones, see: Jeyaraman & Avila (1981 ▶). For similiar structures, see: Parthiban et al. (2008a ▶,b ▶,c ▶,d ▶,e ▶). For puckering parameters, see: Web & Becker (1967 ▶); Cremer & Pople (1975 ▶).

Experimental

Crystal data

C20H19Cl2NO M = 360.26 Orthorhombic, a = 6.9950 (14) Å b = 12.180 (2) Å c = 20.770 (4) Å V = 1769.6 (6) Å3 Z = 4 Mo Kα radiation μ = 0.37 mm−1 T = 298 K 0.31 × 0.25 × 0.22 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.875, T max = 0.922 23614 measured reflections 4284 independent reflections 2762 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.084 S = 1.01 4284 reflections 221 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.25 e Å−3 Absolute structure: Flack (1983 ▶), 1756 Friedel pairs Flack parameter: −0.05 (5) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809009945/gw2060sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809009945/gw2060Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H19Cl2NOF(000) = 752
Mr = 360.26Dx = 1.352 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 5421 reflections
a = 6.9950 (14) Åθ = 2.6–22.5°
b = 12.180 (2) ŵ = 0.37 mm1
c = 20.770 (4) ÅT = 298 K
V = 1769.6 (6) Å3Block, colourless
Z = 40.31 × 0.25 × 0.22 mm
Bruker APEXII CCD area-detector diffractometer4284 independent reflections
Radiation source: fine-focus sealed tube2762 reflections with I > 2σ(I)
graphiteRint = 0.046
ω scansθmax = 28.3°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 1999)h = −8→9
Tmin = 0.875, Tmax = 0.922k = −16→16
23614 measured reflectionsl = −27→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.084w = 1/[σ2(Fo2) + (0.0341P)2 + 0.181P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.002
4284 reflectionsΔρmax = 0.16 e Å3
221 parametersΔρmin = −0.25 e Å3
0 restraintsAbsolute structure: Flack (1983), 1756 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.05 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1155 (3)0.91094 (15)0.96470 (9)0.0351 (5)
H10.08390.86901.00350.042*
C2−0.0754 (3)0.94712 (17)0.93253 (10)0.0425 (5)
H2−0.14830.99100.96350.051*
C3−0.0574 (3)1.01301 (18)0.86920 (11)0.0522 (6)
H3A−0.18291.03980.85710.063*
H3B0.02361.07630.87680.063*
C40.0248 (4)0.94740 (18)0.81344 (10)0.0517 (6)
H4A0.00350.98740.77370.062*
H4B0.16170.94000.81930.062*
C5−0.0633 (3)0.83391 (19)0.80751 (10)0.0493 (6)
H5A0.01410.79060.77820.059*
H5B−0.18940.84110.78860.059*
C6−0.0815 (3)0.77124 (16)0.87165 (10)0.0405 (5)
H6−0.15830.70500.86460.049*
C70.1088 (3)0.73829 (16)0.90524 (9)0.0373 (5)
H70.07670.70170.94590.045*
C8−0.1852 (3)0.84501 (17)0.91799 (9)0.0417 (5)
C90.2390 (3)1.00628 (15)0.98456 (9)0.0353 (5)
C100.3661 (3)1.05578 (17)0.94271 (10)0.0485 (6)
H100.37801.02920.90090.058*
C110.4763 (4)1.14476 (18)0.96219 (12)0.0589 (7)
H110.56091.17730.93340.071*
C120.4608 (3)1.18510 (18)1.02405 (11)0.0514 (6)
H120.53301.24521.03720.062*
C130.3367 (3)1.13481 (15)1.06568 (10)0.0430 (5)
C140.2249 (3)1.04678 (16)1.04695 (9)0.0399 (5)
H140.14041.01481.07600.048*
C150.2255 (3)0.65933 (15)0.86531 (10)0.0388 (5)
C160.2048 (3)0.54727 (17)0.87560 (12)0.0543 (6)
H160.12300.52220.90770.065*
C170.3056 (4)0.47232 (18)0.83825 (15)0.0679 (8)
H170.28950.39750.84530.081*
C180.4283 (4)0.5073 (2)0.79115 (13)0.0619 (7)
H180.49610.45700.76640.074*
C190.4494 (3)0.61781 (19)0.78124 (12)0.0514 (6)
C200.3510 (3)0.69381 (17)0.81787 (10)0.0457 (5)
H200.36920.76840.81060.055*
Cl10.32230 (11)1.18133 (5)1.14500 (3)0.0681 (2)
Cl20.60281 (11)0.66335 (6)0.72080 (3)0.0794 (2)
N10.2172 (3)0.83753 (13)0.92051 (8)0.0358 (4)
O1−0.3405 (2)0.82264 (14)0.94107 (7)0.0583 (4)
H1A0.324 (3)0.8184 (15)0.9342 (9)0.033 (6)*
U11U22U33U12U13U23
C10.0369 (12)0.0377 (11)0.0307 (9)−0.0016 (9)0.0059 (9)−0.0005 (9)
C20.0360 (12)0.0472 (12)0.0443 (12)0.0048 (10)0.0048 (10)−0.0061 (10)
C30.0502 (15)0.0476 (13)0.0587 (15)0.0068 (11)−0.0079 (12)0.0076 (11)
C40.0549 (14)0.0579 (14)0.0421 (12)−0.0040 (12)−0.0058 (11)0.0153 (11)
C50.0462 (14)0.0647 (14)0.0370 (11)0.0005 (12)−0.0065 (10)0.0008 (11)
C60.0358 (12)0.0435 (12)0.0421 (12)−0.0079 (10)−0.0046 (10)−0.0016 (9)
C70.0386 (12)0.0371 (11)0.0363 (11)−0.0059 (10)−0.0013 (9)0.0008 (9)
C80.0307 (12)0.0577 (13)0.0366 (11)0.0013 (11)−0.0007 (10)0.0090 (10)
C90.0347 (11)0.0353 (11)0.0359 (11)0.0048 (9)0.0008 (9)−0.0016 (9)
C100.0553 (14)0.0469 (12)0.0433 (12)−0.0088 (12)0.0088 (11)−0.0102 (10)
C110.0656 (16)0.0530 (15)0.0580 (14)−0.0152 (13)0.0154 (13)−0.0035 (12)
C120.0536 (15)0.0388 (12)0.0619 (15)−0.0075 (12)−0.0048 (12)−0.0081 (11)
C130.0500 (13)0.0381 (11)0.0409 (11)0.0058 (10)−0.0065 (11)−0.0082 (9)
C140.0406 (12)0.0422 (11)0.0368 (11)0.0054 (10)0.0017 (9)0.0006 (9)
C150.0396 (12)0.0355 (11)0.0412 (11)−0.0008 (9)−0.0085 (10)−0.0074 (9)
C160.0499 (15)0.0423 (13)0.0708 (16)−0.0074 (12)−0.0046 (12)−0.0040 (11)
C170.0720 (19)0.0362 (13)0.096 (2)0.0028 (13)−0.0140 (17)−0.0134 (13)
C180.0565 (16)0.0550 (16)0.0743 (18)0.0137 (13)−0.0127 (15)−0.0296 (14)
C190.0460 (14)0.0588 (15)0.0494 (13)0.0060 (11)−0.0049 (11)−0.0193 (11)
C200.0507 (13)0.0386 (11)0.0477 (12)0.0012 (11)−0.0006 (11)−0.0109 (10)
Cl10.0959 (5)0.0649 (4)0.0435 (3)−0.0048 (4)−0.0084 (3)−0.0171 (3)
Cl20.0814 (5)0.0891 (5)0.0675 (4)0.0069 (4)0.0235 (4)−0.0261 (4)
N10.0305 (10)0.0393 (9)0.0376 (9)0.0018 (9)−0.0019 (8)−0.0052 (8)
O10.0363 (9)0.0793 (11)0.0593 (10)−0.0063 (9)0.0087 (8)0.0071 (9)
C1—N11.465 (2)C9—C101.382 (3)
C1—C91.505 (3)C9—C141.390 (3)
C1—C21.557 (3)C10—C111.390 (3)
C1—H10.9800C10—H100.9300
C2—C81.493 (3)C11—C121.380 (3)
C2—C31.546 (3)C11—H110.9300
C2—H20.9800C12—C131.369 (3)
C3—C41.520 (3)C12—H120.9300
C3—H3A0.9700C13—C141.383 (3)
C3—H3B0.9700C13—Cl11.745 (2)
C4—C51.518 (3)C14—H140.9300
C4—H4A0.9700C15—C161.389 (3)
C4—H4B0.9700C15—C201.385 (3)
C5—C61.541 (3)C16—C171.390 (3)
C5—H5A0.9700C16—H160.9300
C5—H5B0.9700C17—C181.370 (4)
C6—C81.503 (3)C17—H170.9300
C6—C71.556 (3)C18—C191.369 (3)
C6—H60.9800C18—H180.9300
C7—N11.462 (3)C19—C201.382 (3)
C7—C151.510 (3)C19—Cl21.742 (3)
C7—H70.9800C20—H200.9300
C8—O11.218 (2)N1—H1A0.83 (2)
N1—C1—C9111.35 (16)O1—C8—C2124.5 (2)
N1—C1—C2108.66 (16)O1—C8—C6123.3 (2)
C9—C1—C2113.05 (16)C2—C8—C6112.28 (17)
N1—C1—H1107.9C10—C9—C14118.52 (19)
C9—C1—H1107.9C10—C9—C1122.25 (18)
C2—C1—H1107.9C14—C9—C1119.23 (18)
C8—C2—C3107.59 (18)C9—C10—C11120.9 (2)
C8—C2—C1107.01 (16)C9—C10—H10119.5
C3—C2—C1116.25 (17)C11—C10—H10119.5
C8—C2—H2108.6C12—C11—C10120.3 (2)
C3—C2—H2108.6C12—C11—H11119.8
C1—C2—H2108.6C10—C11—H11119.8
C4—C3—C2113.96 (17)C13—C12—C11118.6 (2)
C4—C3—H3A108.8C13—C12—H12120.7
C2—C3—H3A108.8C11—C12—H12120.7
C4—C3—H3B108.8C12—C13—C14121.8 (2)
C2—C3—H3B108.8C12—C13—Cl1119.18 (17)
H3A—C3—H3B107.7C14—C13—Cl1118.97 (16)
C5—C4—C3112.78 (19)C13—C14—C9119.79 (19)
C5—C4—H4A109.0C13—C14—H14120.1
C3—C4—H4A109.0C9—C14—H14120.1
C5—C4—H4B109.0C16—C15—C20118.3 (2)
C3—C4—H4B109.0C16—C15—C7119.01 (19)
H4A—C4—H4B107.8C20—C15—C7122.72 (18)
C4—C5—C6114.49 (17)C15—C16—C17120.4 (2)
C4—C5—H5A108.6C15—C16—H16119.8
C6—C5—H5A108.6C17—C16—H16119.8
C4—C5—H5B108.6C18—C17—C16120.8 (2)
C6—C5—H5B108.6C18—C17—H17119.6
H5A—C5—H5B107.6C16—C17—H17119.6
C8—C6—C5107.32 (17)C19—C18—C17118.7 (2)
C8—C6—C7106.25 (16)C19—C18—H18120.6
C5—C6—C7116.39 (17)C17—C18—H18120.6
C8—C6—H6108.9C18—C19—C20121.5 (2)
C5—C6—H6108.9C18—C19—Cl2119.17 (19)
C7—C6—H6108.9C20—C19—Cl2119.36 (18)
N1—C7—C15111.44 (16)C19—C20—C15120.3 (2)
N1—C7—C6109.14 (16)C19—C20—H20119.9
C15—C7—C6112.37 (16)C15—C20—H20119.9
N1—C7—H7107.9C7—N1—C1112.88 (15)
C15—C7—H7107.9C7—N1—H1A108.0 (14)
C6—C7—H7107.9C1—N1—H1A113.0 (14)
N1—C1—C2—C858.1 (2)C1—C9—C10—C11179.1 (2)
C9—C1—C2—C8−177.77 (16)C9—C10—C11—C120.2 (4)
N1—C1—C2—C3−62.1 (2)C10—C11—C12—C130.8 (4)
C9—C1—C2—C362.0 (2)C11—C12—C13—C14−1.3 (3)
C8—C2—C3—C4−53.3 (2)C11—C12—C13—Cl1177.49 (19)
C1—C2—C3—C466.6 (3)C12—C13—C14—C90.9 (3)
C2—C3—C4—C545.2 (3)Cl1—C13—C14—C9−177.89 (16)
C3—C4—C5—C6−45.3 (3)C10—C9—C14—C130.0 (3)
C4—C5—C6—C852.9 (2)C1—C9—C14—C13−179.61 (17)
C4—C5—C6—C7−65.9 (2)N1—C7—C15—C16143.69 (19)
C8—C6—C7—N1−58.4 (2)C6—C7—C15—C16−93.5 (2)
C5—C6—C7—N160.9 (2)N1—C7—C15—C20−37.3 (3)
C8—C6—C7—C15177.42 (16)C6—C7—C15—C2085.5 (2)
C5—C6—C7—C15−63.2 (2)C20—C15—C16—C17−1.1 (3)
C3—C2—C8—O1−116.6 (2)C7—C15—C16—C17177.9 (2)
C1—C2—C8—O1117.8 (2)C15—C16—C17—C180.7 (4)
C3—C2—C8—C663.9 (2)C16—C17—C18—C19−0.3 (4)
C1—C2—C8—C6−61.7 (2)C17—C18—C19—C200.5 (4)
C5—C6—C8—O1117.0 (2)C17—C18—C19—Cl2−179.20 (19)
C7—C6—C8—O1−117.9 (2)C18—C19—C20—C15−1.0 (4)
C5—C6—C8—C2−63.6 (2)Cl2—C19—C20—C15178.72 (16)
C7—C6—C8—C261.6 (2)C16—C15—C20—C191.3 (3)
N1—C1—C9—C1036.4 (3)C7—C15—C20—C19−177.8 (2)
C2—C1—C9—C10−86.3 (2)C15—C7—N1—C1−174.09 (16)
N1—C1—C9—C14−143.97 (18)C6—C7—N1—C161.2 (2)
C2—C1—C9—C1493.4 (2)C9—C1—N1—C7174.24 (16)
C14—C9—C10—C11−0.6 (3)C2—C1—N1—C7−60.6 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.83 (2)2.35 (2)3.129 (3)155.4 (18)
C7—H7···O1ii0.982.443.296 (2)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.83 (2)2.35 (2)3.129 (3)155.4 (18)
C7—H7⋯O1ii0.982.443.296 (2)146

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,4-Bis(3-fluoro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; K Thirumurugan; V Ramkumar; S Pazhamalai; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

3.  2,4-Bis(2-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Kwon Taek Lim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26

4.  2,4-Bis(2-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Se Mo Son; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-20

5.  2,4-Bis(3-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Kwon Taek Lim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-13

6.  2,4-Bis(4-fluoro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; H D Santan; Jong Tae Kim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06
  6 in total

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