Literature DB >> 21580151

2,4-Bis(3-methoxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

P Parthiban, V Ramkumar, Yeon Tae Jeong.   

Abstract

In the crystal structure, the title compound, C(22)H(25)NO(3), exists in a twin-chair conformation with equatorial orientations of the meta-methoxy-phenyl groups on both sides of the secondary amino group. The title compound is a positional isomer of 2,4-bis-(2-methoxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one and 2,4-bis-(4-methoxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one, which both also exhibit twin-chair conformations with equatorial dispositions of the anisyl rings on both sides of the secondary amino group. In the title compound, the meta-methoxy-phenyl rings are orientated at an angle of 25.02 (3)° with respect to each other, whereas in the ortho and para isomers, the anisyl rings are orientated at dihedral angles of 33.86 (3) and 37.43 (4)°, respectively. The crystal packing is dominated by van der Waals inter-actions and by an inter-molecular N-H⋯O hydrogen bond, whereas in the ortho isomer, an inter-molecular N-H⋯π inter-action (H⋯Cg = 2.75 Å) is found.

Entities:  

Year:  2009        PMID: 21580151      PMCID: PMC2980113          DOI: 10.1107/S1600536809050697

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and biological activity of 3-aza­bicyclo­[3.3.1]nonan-9-ones, see: Jeyaraman & Avila (1981 ▶). For the nicotinic acetyl­choline receptor antogonistic activity of diter­penoid/norditerpenoid alkaloids, see: Hardick et al. (1996 ▶); Barker et al. (2005 ▶). For the structures of the ortho and para OMe-substitued isomers, see: Parthiban et al. (2009a ▶); Cox et al. (1985 ▶). For related structures, see: Parthiban et al. (2008a ▶,b ▶,c ▶, 2009b ▶,c ▶), Smith-Verdier et al. (1983 ▶); Padegimas & Kovacic (1972 ▶). For ring puckering analysis, see: Cremer & Pople (1975 ▶); Nardelli (1983 ▶).

Experimental

Crystal data

C22H25NO3 M = 351.43 Monoclinic, a = 22.3843 (9) Å b = 6.5666 (3) Å c = 13.0745 (4) Å β = 106.382 (2)° V = 1843.78 (13) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.40 × 0.28 × 0.15 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.967, T max = 0.988 12835 measured reflections 3971 independent reflections 2326 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.136 S = 1.06 3971 reflections 241 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809050697/zl2238sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809050697/zl2238Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H25NO3F(000) = 752
Mr = 351.43Dx = 1.266 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2453 reflections
a = 22.3843 (9) Åθ = 2.9–22.7°
b = 6.5666 (3) ŵ = 0.08 mm1
c = 13.0745 (4) ÅT = 298 K
β = 106.382 (2)°Block, colourless
V = 1843.78 (13) Å30.40 × 0.28 × 0.15 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer3971 independent reflections
Radiation source: fine-focus sealed tube2326 reflections with I > 2σ(I)
graphiteRint = 0.037
phi and ω scansθmax = 28.3°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Bruker, 1999)h = −27→28
Tmin = 0.967, Tmax = 0.988k = −7→8
12835 measured reflectionsl = −12→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0643P)2] where P = (Fo2 + 2Fc2)/3
3971 reflections(Δ/σ)max < 0.001
241 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.32467 (7)0.5186 (3)0.49436 (13)0.0356 (4)
H10.34710.64830.50980.043*
C20.30802 (8)0.4800 (3)0.37207 (13)0.0388 (5)
H20.34640.48570.35020.047*
C30.27531 (9)0.2775 (3)0.33443 (15)0.0479 (5)
H3A0.27240.25890.25960.057*
H3B0.30050.16740.37370.057*
C40.21054 (10)0.2635 (3)0.34870 (16)0.0573 (6)
H4A0.18920.14780.30850.069*
H4B0.21410.23930.42340.069*
C50.17173 (9)0.4527 (3)0.31292 (15)0.0484 (5)
H5A0.13560.44690.33980.058*
H5B0.15690.45290.23570.058*
C60.20648 (8)0.6525 (3)0.34984 (13)0.0398 (4)
H60.18070.76600.31330.048*
C70.22453 (7)0.6922 (3)0.47199 (13)0.0376 (4)
H70.24600.82370.48600.045*
C80.26600 (8)0.6491 (3)0.31776 (13)0.0382 (4)
C90.36693 (7)0.3516 (3)0.55456 (12)0.0351 (4)
C100.34445 (8)0.1866 (3)0.59844 (13)0.0430 (5)
H100.30240.17960.59470.052*
C110.38393 (9)0.0330 (3)0.64743 (15)0.0495 (5)
H110.3682−0.07610.67710.059*
C120.44674 (9)0.0379 (3)0.65342 (14)0.0489 (5)
H120.4732−0.06640.68690.059*
C130.46919 (8)0.2005 (3)0.60884 (14)0.0419 (5)
C140.42955 (8)0.3570 (3)0.56051 (13)0.0386 (4)
H140.44530.46710.53170.046*
C150.16734 (8)0.7034 (3)0.51186 (13)0.0371 (4)
C160.13403 (8)0.8838 (3)0.50128 (15)0.0473 (5)
H160.14710.99580.46970.057*
C170.08192 (9)0.8993 (3)0.53688 (16)0.0532 (5)
H170.06041.02200.52960.064*
C180.06116 (8)0.7346 (3)0.58332 (15)0.0478 (5)
H180.02580.74510.60700.057*
C190.09401 (8)0.5548 (3)0.59381 (14)0.0409 (5)
C200.14652 (8)0.5399 (3)0.55826 (14)0.0403 (5)
H200.16810.41730.56580.048*
C210.57145 (9)0.0580 (3)0.65086 (19)0.0692 (7)
H21A0.57470.04310.72530.104*
H21B0.61180.08680.64230.104*
H21C0.5557−0.06590.61410.104*
C220.03130 (10)0.3935 (4)0.69181 (18)0.0737 (7)
H22A0.04290.49370.74740.111*
H22B0.02680.26330.72230.111*
H22C−0.00750.43170.64210.111*
N10.26760 (6)0.5346 (2)0.52819 (12)0.0370 (4)
O10.27803 (6)0.7680 (2)0.25553 (10)0.0548 (4)
O20.53008 (6)0.2212 (2)0.60764 (11)0.0612 (4)
O30.07815 (6)0.3815 (2)0.63810 (11)0.0613 (4)
H1N0.2775 (8)0.558 (3)0.5980 (15)0.048 (6)*
U11U22U33U12U13U23
C10.0318 (9)0.0366 (11)0.0398 (10)0.0004 (8)0.0123 (8)−0.0011 (8)
C20.0399 (10)0.0469 (12)0.0347 (10)0.0054 (9)0.0190 (8)0.0037 (8)
C30.0630 (13)0.0441 (12)0.0381 (10)0.0039 (10)0.0168 (9)−0.0040 (9)
C40.0650 (14)0.0463 (13)0.0560 (13)−0.0119 (11)0.0097 (11)−0.0059 (10)
C50.0440 (11)0.0584 (14)0.0405 (11)−0.0084 (10)0.0083 (9)−0.0056 (10)
C60.0372 (10)0.0426 (11)0.0390 (10)0.0050 (8)0.0096 (8)0.0064 (9)
C70.0341 (9)0.0372 (11)0.0428 (10)0.0001 (8)0.0128 (8)−0.0016 (8)
C80.0431 (10)0.0402 (11)0.0314 (9)−0.0028 (9)0.0107 (8)0.0010 (9)
C90.0369 (10)0.0408 (11)0.0293 (9)0.0022 (8)0.0120 (7)−0.0016 (8)
C100.0375 (10)0.0547 (13)0.0401 (10)0.0012 (9)0.0165 (8)0.0066 (9)
C110.0554 (12)0.0529 (13)0.0456 (12)0.0049 (10)0.0229 (10)0.0154 (10)
C120.0512 (12)0.0535 (13)0.0420 (11)0.0125 (10)0.0133 (9)0.0123 (10)
C130.0333 (10)0.0524 (13)0.0400 (10)0.0034 (9)0.0101 (8)−0.0009 (9)
C140.0362 (10)0.0417 (11)0.0392 (10)0.0000 (8)0.0128 (8)0.0021 (9)
C150.0339 (9)0.0407 (11)0.0357 (9)0.0034 (8)0.0081 (8)−0.0037 (8)
C160.0430 (11)0.0400 (12)0.0612 (13)0.0041 (9)0.0184 (9)0.0037 (10)
C170.0451 (12)0.0464 (13)0.0692 (14)0.0152 (10)0.0177 (10)0.0001 (11)
C180.0355 (10)0.0562 (14)0.0537 (12)0.0086 (10)0.0162 (9)−0.0021 (10)
C190.0383 (10)0.0435 (12)0.0414 (11)0.0041 (9)0.0121 (8)0.0005 (9)
C200.0382 (10)0.0389 (11)0.0452 (11)0.0104 (8)0.0140 (8)0.0008 (9)
C210.0418 (12)0.0740 (17)0.0868 (17)0.0182 (11)0.0098 (11)0.0064 (13)
C220.0694 (15)0.0840 (19)0.0840 (17)0.0043 (13)0.0481 (14)0.0144 (14)
N10.0325 (8)0.0488 (10)0.0313 (9)0.0070 (7)0.0114 (7)−0.0019 (7)
O10.0582 (9)0.0581 (10)0.0507 (8)−0.0021 (7)0.0194 (7)0.0200 (7)
O20.0350 (8)0.0656 (10)0.0832 (11)0.0114 (7)0.0167 (7)0.0151 (8)
O30.0600 (9)0.0554 (10)0.0812 (10)0.0095 (7)0.0406 (8)0.0162 (8)
C1—N11.469 (2)C11—C121.386 (3)
C1—C91.516 (2)C11—H110.9300
C1—C21.557 (2)C12—C131.378 (3)
C1—H10.9800C12—H120.9300
C2—C81.498 (2)C13—O21.374 (2)
C2—C31.531 (2)C13—C141.388 (2)
C2—H20.9800C14—H140.9300
C3—C41.516 (3)C15—C201.378 (2)
C3—H3A0.9700C15—C161.385 (2)
C3—H3B0.9700C16—C171.376 (2)
C4—C51.512 (3)C16—H160.9300
C4—H4A0.9700C17—C181.383 (3)
C4—H4B0.9700C17—H170.9300
C5—C61.532 (2)C18—C191.378 (2)
C5—H5A0.9700C18—H180.9300
C5—H5B0.9700C19—O31.368 (2)
C6—C81.506 (2)C19—C201.384 (2)
C6—C71.555 (2)C20—H200.9300
C6—H60.9800C21—O21.425 (2)
C7—N11.463 (2)C21—H21A0.9600
C7—C151.514 (2)C21—H21B0.9600
C7—H70.9800C21—H21C0.9600
C8—O11.2119 (19)C22—O31.419 (2)
C9—C141.382 (2)C22—H22A0.9600
C9—C101.386 (2)C22—H22B0.9600
C10—C111.374 (2)C22—H22C0.9600
C10—H100.9300N1—H1N0.890 (18)
N1—C1—C9111.34 (13)C11—C10—H10119.8
N1—C1—C2110.15 (13)C9—C10—H10119.8
C9—C1—C2110.43 (13)C10—C11—C12121.21 (18)
N1—C1—H1108.3C10—C11—H11119.4
C9—C1—H1108.3C12—C11—H11119.4
C2—C1—H1108.3C13—C12—C11118.63 (18)
C8—C2—C3108.17 (15)C13—C12—H12120.7
C8—C2—C1107.60 (13)C11—C12—H12120.7
C3—C2—C1115.21 (14)O2—C13—C12124.24 (17)
C8—C2—H2108.6O2—C13—C14115.51 (16)
C3—C2—H2108.6C12—C13—C14120.25 (16)
C1—C2—H2108.6C9—C14—C13120.99 (17)
C4—C3—C2113.59 (15)C9—C14—H14119.5
C4—C3—H3A108.8C13—C14—H14119.5
C2—C3—H3A108.8C20—C15—C16118.10 (16)
C4—C3—H3B108.8C20—C15—C7122.51 (16)
C2—C3—H3B108.8C16—C15—C7119.40 (16)
H3A—C3—H3B107.7C17—C16—C15120.87 (18)
C5—C4—C3113.46 (16)C17—C16—H16119.6
C5—C4—H4A108.9C15—C16—H16119.6
C3—C4—H4A108.9C16—C17—C18120.83 (18)
C5—C4—H4B108.9C16—C17—H17119.6
C3—C4—H4B108.9C18—C17—H17119.6
H4A—C4—H4B107.7C19—C18—C17118.55 (17)
C4—C5—C6114.18 (15)C19—C18—H18120.7
C4—C5—H5A108.7C17—C18—H18120.7
C6—C5—H5A108.7O3—C19—C18124.06 (16)
C4—C5—H5B108.7O3—C19—C20115.45 (16)
C6—C5—H5B108.7C18—C19—C20120.48 (17)
H5A—C5—H5B107.6C15—C20—C19121.17 (16)
C8—C6—C5108.04 (15)C15—C20—H20119.4
C8—C6—C7107.14 (13)C19—C20—H20119.4
C5—C6—C7115.39 (14)O2—C21—H21A109.5
C8—C6—H6108.7O2—C21—H21B109.5
C5—C6—H6108.7H21A—C21—H21B109.5
C7—C6—H6108.7O2—C21—H21C109.5
N1—C7—C15111.28 (14)H21A—C21—H21C109.5
N1—C7—C6109.93 (14)H21B—C21—H21C109.5
C15—C7—C6111.21 (13)O3—C22—H22A109.5
N1—C7—H7108.1O3—C22—H22B109.5
C15—C7—H7108.1H22A—C22—H22B109.5
C6—C7—H7108.1O3—C22—H22C109.5
O1—C8—C2124.55 (16)H22A—C22—H22C109.5
O1—C8—C6123.99 (16)H22B—C22—H22C109.5
C2—C8—C6111.46 (14)C7—N1—C1113.91 (13)
C14—C9—C10118.53 (17)C7—N1—H1N109.3 (12)
C14—C9—C1119.04 (16)C1—N1—H1N109.6 (11)
C10—C9—C1122.31 (15)C13—O2—C21117.20 (16)
C11—C10—C9120.39 (17)C19—O3—C22118.64 (15)
N1—C1—C2—C856.22 (18)C10—C11—C12—C13−0.1 (3)
C9—C1—C2—C8179.60 (13)C11—C12—C13—O2−178.66 (17)
N1—C1—C2—C3−64.51 (19)C11—C12—C13—C141.0 (3)
C9—C1—C2—C358.88 (19)C10—C9—C14—C130.3 (3)
C8—C2—C3—C4−53.64 (19)C1—C9—C14—C13−175.81 (15)
C1—C2—C3—C466.8 (2)O2—C13—C14—C9178.61 (16)
C2—C3—C4—C545.2 (2)C12—C13—C14—C9−1.0 (3)
C3—C4—C5—C6−44.8 (2)N1—C7—C15—C20−25.2 (2)
C4—C5—C6—C852.4 (2)C6—C7—C15—C2097.7 (2)
C4—C5—C6—C7−67.4 (2)N1—C7—C15—C16155.10 (16)
C8—C6—C7—N1−57.64 (18)C6—C7—C15—C16−82.0 (2)
C5—C6—C7—N162.69 (18)C20—C15—C16—C170.5 (3)
C8—C6—C7—C15178.66 (15)C7—C15—C16—C17−179.85 (16)
C5—C6—C7—C15−61.0 (2)C15—C16—C17—C18−0.6 (3)
C3—C2—C8—O1−116.08 (19)C16—C17—C18—C190.4 (3)
C1—C2—C8—O1118.86 (18)C17—C18—C19—O3−179.87 (18)
C3—C2—C8—C663.68 (17)C17—C18—C19—C20−0.2 (3)
C1—C2—C8—C6−61.37 (18)C16—C15—C20—C19−0.3 (3)
C5—C6—C8—O1116.90 (19)C7—C15—C20—C19−179.91 (15)
C7—C6—C8—O1−118.19 (18)O3—C19—C20—C15179.84 (16)
C5—C6—C8—C2−62.87 (18)C18—C19—C20—C150.1 (3)
C7—C6—C8—C262.04 (19)C15—C7—N1—C1−178.96 (13)
N1—C1—C9—C14−158.74 (15)C6—C7—N1—C157.38 (18)
C2—C1—C9—C1478.57 (19)C9—C1—N1—C7−179.40 (14)
N1—C1—C9—C1025.3 (2)C2—C1—N1—C7−56.55 (19)
C2—C1—C9—C10−97.36 (18)C12—C13—O2—C213.2 (3)
C14—C9—C10—C110.5 (3)C14—C13—O2—C21−176.39 (17)
C1—C9—C10—C11176.49 (16)C18—C19—O3—C22−10.4 (3)
C9—C10—C11—C12−0.6 (3)C20—C19—O3—C22169.87 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.890 (18)2.352 (18)3.1901 (19)157.0 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O1i0.890 (18)2.352 (18)3.1901 (19)157.0 (16)

Symmetry code: (i) .

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Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Se Mo Son; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-23

5.  2,4-Bis(4-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; S Amirthaganesan; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20

6.  2,4-Bis(2-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Kwon Taek Lim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26

7.  2,4-Bis(2-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Se Mo Son; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-20

8.  2,4-Bis(2-fluoro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-17

9.  2,4-Bis(3-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Kwon Taek Lim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-13
  9 in total
  4 in total

1.  2,4-Bis(4-propoxyphen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-05

2.  2,4-Bis(4-but-oxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-16

3.  2,4-Bis(2-eth-oxy-phen-yl)-7-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Dong Ho Park; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-20

4.  Crystal structure of 1-[2,4-bis(4-methoxy-phenyl)-3-azabicyclo[3.3.1]nonan-3-yl]ethanone.

Authors:  V Shreevidhyaa Suressh; S Sathya; A Akila; S Ponnuswamy; G Usha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-10-24
  4 in total

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