Literature DB >> 23125731

2,4-Bis(2-bromo-phen-yl)-7-tert-pentyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Dong Ho Park1, V Ramkumar, P Parthiban.   

Abstract

The title compound, C(25)H(29)Br(2)NO, is a tert-pentyl analog of 2,4-bis-(2-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one [Par-thiban et al. (2008 ▶). Acta Cryst. E64, o2385]. Similar to its analog, the title compound exists in a twin-chair conformation with an equatorial orientation of the 2-bromo-phenyl groups. The benzene rings are inclined to each other at a dihedral angle of 29.6 (3)°. The tert-pentyl group on the cyclo-hexa-none ring also adopts an exocyclic equatorial disposition.

Entities:  

Year:  2012        PMID: 23125731      PMCID: PMC3470318          DOI: 10.1107/S1600536812039128

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, stereochemistry and biological activity of 3-aza­bicyclo­[3.3.1]nonan-9-ones, see: Park et al. (2011 ▶, 2012a ▶). For the crystal structure of closely related compound, see: Parthiban et al. (2008 ▶). For examples of aza­bicycles with different conformations, see: Parthiban et al. (2010 ▶); Park et al. (2012b ▶); Padegimas & Kovacic (1972 ▶).

Experimental

Crystal data

C25H29Br2NO M = 519.31 Triclinic, a = 7.7342 (7) Å b = 10.6409 (10) Å c = 15.0924 (12) Å α = 105.856 (4)° β = 101.242 (4)° γ = 97.112 (4)° V = 1151.08 (18) Å3 Z = 2 Mo Kα radiation μ = 3.54 mm−1 T = 298 K 0.18 × 0.15 × 0.10 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.569, T max = 0.719 16189 measured reflections 6006 independent reflections 3081 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.212 S = 1.02 6006 reflections 259 parameters 1 restraint H-atom parameters constrained Δρmax = 1.24 e Å−3 Δρmin = −1.26 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812039128/cv5341sup1.cif Supplementary material file. DOI: 10.1107/S1600536812039128/cv5341Isup2.mol Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812039128/cv5341Isup3.hkl Supplementary material file. DOI: 10.1107/S1600536812039128/cv5341Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H29Br2NOZ = 2
Mr = 519.31F(000) = 528
Triclinic, P1Dx = 1.498 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7342 (7) ÅCell parameters from 4160 reflections
b = 10.6409 (10) Åθ = 2.7–22.8°
c = 15.0924 (12) ŵ = 3.54 mm1
α = 105.856 (4)°T = 298 K
β = 101.242 (4)°Prism, colourless
γ = 97.112 (4)°0.18 × 0.15 × 0.10 mm
V = 1151.08 (18) Å3
Bruker APEXII CCD area-detector diffractometer6006 independent reflections
Radiation source: fine-focus sealed tube3081 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.047
phi and ω scansθmax = 29.5°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −10→10
Tmin = 0.569, Tmax = 0.719k = −14→14
16189 measured reflectionsl = −20→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.212H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.117P)2] where P = (Fo2 + 2Fc2)/3
6006 reflections(Δ/σ)max = 0.001
259 parametersΔρmax = 1.24 e Å3
1 restraintΔρmin = −1.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.86819 (8)0.90205 (5)0.32088 (5)0.0717 (3)
Br20.85323 (8)0.28410 (7)0.51276 (4)0.0732 (3)
C10.6565 (6)0.6164 (4)0.3068 (3)0.0411 (10)
H10.76140.66790.35730.049*
C20.7228 (6)0.5383 (4)0.2223 (3)0.0440 (11)
H20.80220.60100.20420.053*
C30.5766 (7)0.4547 (4)0.1333 (3)0.0486 (12)
H3A0.49900.51240.11430.058*
H3B0.63420.42190.08220.058*
C40.4601 (7)0.3360 (4)0.1455 (3)0.0456 (11)
H40.38200.37300.18570.055*
C50.5749 (7)0.2611 (4)0.1995 (3)0.0474 (12)
H5A0.63210.20590.15580.057*
H5B0.49590.20210.21950.057*
C60.7214 (6)0.3469 (4)0.2870 (3)0.0441 (11)
H60.79770.28940.30930.053*
C70.6514 (6)0.4244 (4)0.3698 (3)0.0408 (10)
H70.75520.47160.42230.049*
C80.8320 (7)0.4438 (4)0.2566 (3)0.0462 (11)
C90.5400 (6)0.7115 (4)0.2822 (3)0.0405 (10)
C100.6147 (7)0.8408 (4)0.2862 (3)0.0461 (11)
C110.5088 (10)0.9304 (5)0.2667 (4)0.0670 (16)
H110.56181.01580.27080.080*
C120.3248 (9)0.8927 (6)0.2414 (5)0.0755 (18)
H120.25270.95300.22980.091*
C130.2472 (8)0.7627 (6)0.2332 (4)0.0676 (16)
H130.12350.73410.21300.081*
C140.3574 (7)0.6776 (5)0.2555 (4)0.0531 (13)
H140.30420.59250.25210.064*
C150.5335 (6)0.3345 (4)0.4043 (3)0.0384 (10)
C160.3459 (6)0.3148 (5)0.3759 (3)0.0483 (11)
H160.29410.36280.33820.058*
C170.2358 (8)0.2263 (6)0.4020 (4)0.0596 (14)
H170.11190.21400.38090.072*
C180.3103 (8)0.1554 (5)0.4598 (4)0.0586 (14)
H180.23640.09540.47730.070*
C190.4926 (8)0.1744 (4)0.4908 (3)0.0509 (12)
H190.54310.12760.52980.061*
C200.6015 (6)0.2631 (4)0.4641 (3)0.0415 (10)
N10.5541 (5)0.5240 (3)0.3436 (3)0.0413 (9)
H1A0.44630.52820.34930.050*
O10.9910 (5)0.4487 (4)0.2582 (3)0.0695 (10)
C210.3326 (9)0.2448 (5)0.0486 (4)0.0732 (18)
C240.2293 (15)0.1222 (10)0.0634 (7)0.155 (4)
H24A0.31310.07840.09500.186*
H24B0.16560.05980.00230.186*
C220.1993 (13)0.3238 (9)0.0052 (6)0.151 (5)
H22A0.13800.2718−0.05850.226*
H22B0.26490.40620.00460.226*
H22C0.11330.34170.04290.226*
C250.0936 (15)0.1639 (10)0.1242 (7)0.155 (4)
H25A0.14700.24590.17360.232*
H25B0.06240.09590.15210.232*
H25C−0.01260.17580.08470.232*
C230.4459 (12)0.1841 (8)−0.0222 (5)0.113 (3)
H23A0.52720.13720.00650.169*
H23B0.51300.2542−0.03730.169*
H23C0.36710.1237−0.07920.169*
U11U22U33U12U13U23
Br10.0725 (4)0.0449 (3)0.0923 (5)−0.0143 (3)0.0195 (3)0.0238 (3)
Br20.0604 (4)0.0956 (5)0.0726 (5)0.0205 (3)0.0054 (3)0.0452 (4)
C10.045 (3)0.026 (2)0.051 (3)−0.0006 (18)0.012 (2)0.0140 (18)
C20.047 (3)0.035 (2)0.056 (3)0.0005 (19)0.024 (2)0.021 (2)
C30.067 (3)0.035 (2)0.049 (3)0.005 (2)0.021 (2)0.019 (2)
C40.060 (3)0.034 (2)0.045 (3)0.002 (2)0.015 (2)0.018 (2)
C50.070 (3)0.028 (2)0.050 (3)0.007 (2)0.021 (2)0.0159 (19)
C60.049 (3)0.039 (2)0.054 (3)0.013 (2)0.017 (2)0.023 (2)
C70.050 (3)0.034 (2)0.040 (3)0.0032 (19)0.011 (2)0.0167 (19)
C80.047 (3)0.041 (3)0.053 (3)0.009 (2)0.020 (2)0.014 (2)
C90.054 (3)0.028 (2)0.044 (3)0.0075 (19)0.020 (2)0.0130 (18)
C100.068 (3)0.031 (2)0.045 (3)0.008 (2)0.024 (2)0.0141 (19)
C110.111 (5)0.039 (3)0.066 (4)0.019 (3)0.037 (3)0.027 (3)
C120.080 (4)0.077 (4)0.103 (5)0.043 (4)0.042 (4)0.055 (4)
C130.061 (4)0.079 (4)0.080 (4)0.027 (3)0.028 (3)0.040 (3)
C140.053 (3)0.041 (3)0.072 (4)0.007 (2)0.021 (3)0.025 (2)
C150.045 (3)0.031 (2)0.040 (3)0.0051 (18)0.013 (2)0.0095 (18)
C160.043 (3)0.044 (3)0.063 (3)0.007 (2)0.015 (2)0.024 (2)
C170.050 (3)0.064 (3)0.064 (3)−0.003 (3)0.014 (3)0.025 (3)
C180.075 (4)0.046 (3)0.055 (3)−0.007 (3)0.025 (3)0.018 (2)
C190.076 (4)0.039 (3)0.043 (3)0.008 (2)0.018 (2)0.019 (2)
C200.053 (3)0.036 (2)0.041 (3)0.014 (2)0.016 (2)0.0135 (19)
N10.046 (2)0.0310 (18)0.057 (2)0.0084 (16)0.0239 (18)0.0205 (17)
O10.050 (2)0.078 (3)0.096 (3)0.019 (2)0.033 (2)0.039 (2)
C210.095 (5)0.049 (3)0.062 (4)−0.017 (3)0.001 (3)0.021 (3)
C240.197 (9)0.131 (6)0.100 (5)−0.054 (6)0.005 (4)0.034 (5)
C220.179 (9)0.106 (6)0.120 (7)−0.064 (6)−0.080 (6)0.078 (5)
C250.197 (9)0.131 (6)0.100 (5)−0.054 (6)0.005 (4)0.034 (5)
C230.160 (8)0.107 (6)0.041 (4)−0.016 (5)0.017 (4)−0.004 (3)
Br1—C101.908 (5)C12—H120.9300
Br2—C201.904 (5)C13—C141.380 (7)
C1—N11.476 (5)C13—H130.9300
C1—C91.507 (6)C14—H140.9300
C1—C21.537 (7)C15—C201.400 (6)
C1—H10.9800C15—C161.402 (6)
C2—C81.521 (6)C16—C171.379 (7)
C2—C31.542 (7)C16—H160.9300
C2—H20.9800C17—C181.390 (8)
C3—C41.534 (6)C17—H170.9300
C3—H3A0.9700C18—C191.367 (7)
C3—H3B0.9700C18—H180.9300
C4—C51.528 (6)C19—C201.381 (6)
C4—C211.574 (7)C19—H190.9300
C4—H40.9800N1—H1A0.8600
C5—C61.538 (6)C21—C241.537 (10)
C5—H5A0.9700C21—C221.565 (11)
C5—H5B0.9700C21—C231.567 (10)
C6—C81.483 (6)C24—C251.553 (12)
C6—C71.531 (6)C24—H24A0.9700
C6—H60.9800C24—H24B0.9700
C7—N11.468 (6)C22—H22A0.9600
C7—C151.503 (6)C22—H22B0.9600
C7—H70.9800C22—H22C0.9600
C8—O11.220 (6)C25—H25A0.9600
C9—C141.364 (7)C25—H25B0.9600
C9—C101.406 (6)C25—H25C0.9600
C10—C111.385 (7)C23—H23A0.9600
C11—C121.376 (8)C23—H23B0.9600
C11—H110.9300C23—H23C0.9600
C12—C131.401 (8)
N1—C1—C9108.6 (4)C14—C13—C12119.0 (6)
N1—C1—C2110.2 (3)C14—C13—H13120.5
C9—C1—C2113.0 (4)C12—C13—H13120.5
N1—C1—H1108.3C9—C14—C13123.5 (5)
C9—C1—H1108.3C9—C14—H14118.2
C2—C1—H1108.3C13—C14—H14118.2
C8—C2—C1107.1 (4)C20—C15—C16115.7 (4)
C8—C2—C3107.6 (4)C20—C15—C7123.0 (4)
C1—C2—C3116.3 (4)C16—C15—C7121.3 (4)
C8—C2—H2108.5C17—C16—C15122.0 (4)
C1—C2—H2108.5C17—C16—H16119.0
C3—C2—H2108.5C15—C16—H16119.0
C4—C3—C2115.2 (4)C16—C17—C18120.0 (5)
C4—C3—H3A108.5C16—C17—H17120.0
C2—C3—H3A108.5C18—C17—H17120.0
C4—C3—H3B108.5C19—C18—C17119.7 (5)
C2—C3—H3B108.5C19—C18—H18120.1
H3A—C3—H3B107.5C17—C18—H18120.1
C5—C4—C3111.0 (4)C18—C19—C20119.8 (5)
C5—C4—C21114.0 (4)C18—C19—H19120.1
C3—C4—C21112.0 (4)C20—C19—H19120.1
C5—C4—H4106.4C19—C20—C15122.7 (5)
C3—C4—H4106.4C19—C20—Br2116.5 (3)
C21—C4—H4106.4C15—C20—Br2120.8 (3)
C4—C5—C6116.3 (4)C7—N1—C1114.5 (4)
C4—C5—H5A108.2C7—N1—H1A122.7
C6—C5—H5A108.2C1—N1—H1A122.7
C4—C5—H5B108.2C24—C21—C22110.5 (7)
C6—C5—H5B108.2C24—C21—C23103.6 (6)
H5A—C5—H5B107.4C22—C21—C23111.4 (7)
C8—C6—C7108.2 (4)C24—C21—C4109.9 (5)
C8—C6—C5107.5 (4)C22—C21—C4110.9 (5)
C7—C6—C5114.9 (4)C23—C21—C4110.3 (5)
C8—C6—H6108.7C21—C24—C25110.3 (8)
C7—C6—H6108.7C21—C24—H24A109.6
C5—C6—H6108.7C25—C24—H24A109.6
N1—C7—C15109.9 (4)C21—C24—H24B109.6
N1—C7—C6111.0 (3)C25—C24—H24B109.6
C15—C7—C6112.2 (3)H24A—C24—H24B108.1
N1—C7—H7107.9C21—C22—H22A109.5
C15—C7—H7107.9C21—C22—H22B109.5
C6—C7—H7107.9H22A—C22—H22B109.5
O1—C8—C6125.0 (4)C21—C22—H22C109.5
O1—C8—C2123.3 (4)H22A—C22—H22C109.5
C6—C8—C2111.7 (4)H22B—C22—H22C109.5
C14—C9—C10116.3 (4)C24—C25—H25A109.5
C14—C9—C1122.2 (4)C24—C25—H25B109.5
C10—C9—C1121.5 (4)H25A—C25—H25B109.5
C11—C10—C9122.0 (5)C24—C25—H25C109.5
C11—C10—Br1116.8 (4)H25A—C25—H25C109.5
C9—C10—Br1121.2 (4)H25B—C25—H25C109.5
C12—C11—C10119.8 (5)C21—C23—H23A109.5
C12—C11—H11120.1C21—C23—H23B109.5
C10—C11—H11120.1H23A—C23—H23B109.5
C11—C12—C13119.4 (5)C21—C23—H23C109.5
C11—C12—H12120.3H23A—C23—H23C109.5
C13—C12—H12120.3H23B—C23—H23C109.5
N1—C1—C2—C8−56.2 (5)C10—C11—C12—C13−1.7 (9)
C9—C1—C2—C8−178.0 (4)C11—C12—C13—C143.2 (9)
N1—C1—C2—C364.1 (5)C10—C9—C14—C13−0.1 (8)
C9—C1—C2—C3−57.7 (5)C1—C9—C14—C13179.5 (5)
C8—C2—C3—C452.9 (5)C12—C13—C14—C9−2.4 (9)
C1—C2—C3—C4−67.2 (5)N1—C7—C15—C20−156.6 (4)
C2—C3—C4—C5−43.5 (5)C6—C7—C15—C2079.4 (5)
C2—C3—C4—C21−172.2 (4)N1—C7—C15—C1625.0 (6)
C3—C4—C5—C643.8 (5)C6—C7—C15—C16−99.0 (5)
C21—C4—C5—C6171.4 (4)C20—C15—C16—C17−2.7 (7)
C4—C5—C6—C8−53.5 (5)C7—C15—C16—C17175.8 (5)
C4—C5—C6—C767.0 (5)C15—C16—C17—C181.3 (8)
C8—C6—C7—N155.2 (5)C16—C17—C18—C190.3 (8)
C5—C6—C7—N1−64.8 (5)C17—C18—C19—C20−0.4 (8)
C8—C6—C7—C15178.6 (4)C18—C19—C20—C15−1.1 (7)
C5—C6—C7—C1558.6 (5)C18—C19—C20—Br2179.1 (4)
C7—C6—C8—O1118.8 (5)C16—C15—C20—C192.6 (6)
C5—C6—C8—O1−116.6 (5)C7—C15—C20—C19−175.9 (4)
C7—C6—C8—C2−61.2 (5)C16—C15—C20—Br2−177.6 (3)
C5—C6—C8—C263.4 (5)C7—C15—C20—Br23.9 (6)
C1—C2—C8—O1−118.1 (5)C15—C7—N1—C1−178.9 (3)
C3—C2—C8—O1116.2 (5)C6—C7—N1—C1−54.2 (5)
C1—C2—C8—C661.9 (5)C9—C1—N1—C7179.5 (3)
C3—C2—C8—C6−63.8 (5)C2—C1—N1—C755.1 (5)
N1—C1—C9—C14−28.3 (6)C5—C4—C21—C2448.8 (8)
C2—C1—C9—C1494.4 (5)C3—C4—C21—C24175.8 (6)
N1—C1—C9—C10151.3 (4)C5—C4—C21—C22171.4 (6)
C2—C1—C9—C10−86.0 (5)C3—C4—C21—C22−61.6 (7)
C14—C9—C10—C111.8 (7)C5—C4—C21—C23−64.8 (6)
C1—C9—C10—C11−177.9 (4)C3—C4—C21—C2362.3 (6)
C14—C9—C10—Br1−179.2 (4)C22—C21—C24—C25−54.6 (10)
C1—C9—C10—Br11.1 (6)C23—C21—C24—C25−174.0 (8)
C9—C10—C11—C12−0.9 (8)C4—C21—C24—C2568.2 (10)
Br1—C10—C11—C12−179.9 (5)
  5 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,4-Bis(2-fluoro-phen-yl)-1-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-19

3.  2,4-Bis(2-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Se Mo Son; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-20

4.  Design, synthesis, stereochemistry and antioxidant properties of various 7-alkylated 2,4-diaryl-3-azabicyclo[3.3.1]nonan-9-ones.

Authors:  Dong Ho Park; Jayachandran Venkatesan; Se-Kwon Kim; Paramasivam Parthiban
Journal:  Bioorg Med Chem Lett       Date:  2012-06-30       Impact factor: 2.823

5.  2,4,6,8-Tetra-kis(4-chloro-phen-yl)-3,7-diaza-bicyclo-[3.3.1]nonan-9-one O-benzyl-oxime acetone monosolvate.

Authors:  Dong Ho Park; V Ramkumar; P Parthiban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-21
  5 in total
  1 in total

1.  Crystal structure of 2,4-bis-(2-chloro-phen-yl)-7-tert-pent-yl-3-aza-bicyclo[3.3.1]nonan-9-one.

Authors:  Dong Ho Park; V Ramkumar; P Parthiban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-10-15
  1 in total

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