Literature DB >> 21583231

2,4-Bis(2-methoxy-phenyl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

P Parthiban, V Ramkumar, Min Sung Kim, Se Mo Son, Yeon Tae Jeong.   

Abstract

In the title compound, C(22)H(25)NO(3), the mol-ecule has a pseudo-mirror plane. The structure is a positional isomer of 2,4-bis(4-methoxy-phenyl)-3-aza-bicyclo-[3.3.1]nonan-9-one [Cox, McCabe, Milne & Sim (1985 ▶). J. Chem. Soc. Chem. Commun. pp. 626-628]. The 3-aza-bicyclo-[3.3.1]nonan-9-one moiety adopts a double chair conformation with equatorial orientations of both 2-methoxy-phenyl substituents on either side of the secondary amino group. The benzene rings are oriented at an angle of 33.86 (4)° with respect to each other and the meth-oxy groups point towards the carbonyl group. The crystal structure is stabilized by intermolecular N-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21583231      PMCID: PMC2969524          DOI: 10.1107/S1600536809018686

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For prevalence and biological activities of 3-aza­bicyclo­nonan-9-ones, see: Hardick et al. (1996 ▶); Jeyaraman & Avila (1981 ▶); Barker et al. (2005 ▶). For similiar structures, see: Parthiban et al. (2008a ▶,b ▶); Cox et al. (1985 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C22H25NO3 M = 351.43 Monoclinic, a = 7.8616 (2) Å b = 20.8443 (6) Å c = 11.4984 (3) Å β = 95.670(10)° V = 1874.37 (9) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.58 × 0.42 × 0.35 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.945, T max = 0.972 14712 measured reflections 4527 independent reflections 3202 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.135 S = 1.03 4527 reflections 241 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2; data reduction: SAINT-Plus (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809018686/bx2207sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809018686/bx2207Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H25NO3F(000) = 752
Mr = 351.43Dx = 1.245 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4251 reflections
a = 7.8616 (2) Åθ = 2.6–27.0°
b = 20.8443 (6) ŵ = 0.08 mm1
c = 11.4984 (3) ÅT = 298 K
β = 95.867 (1)°Block, colourless
V = 1874.37 (9) Å30.58 × 0.42 × 0.35 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer4527 independent reflections
Radiation source: fine-focus sealed tube3202 reflections with I > 2σ(I)
graphiteRint = 0.023
φ and ω scansθmax = 28.3°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 1999)h = −9→10
Tmin = 0.945, Tmax = 0.972k = −27→26
14712 measured reflectionsl = −15→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.065P)2 + 0.3026P] where P = (Fo2 + 2Fc2)/3
4527 reflections(Δ/σ)max = 0.001
241 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.72892 (16)0.98913 (6)0.17176 (12)0.0343 (3)
H10.79740.98510.10550.041*
C20.85201 (18)1.00058 (7)0.28460 (14)0.0417 (3)
H20.92081.03890.27350.050*
C30.7636 (2)1.00894 (8)0.39684 (15)0.0531 (4)
H3A0.84791.02320.45890.064*
H3B0.67811.04240.38400.064*
C40.6779 (2)0.94870 (9)0.43724 (15)0.0582 (4)
H4A0.57020.94240.38940.070*
H4B0.65290.95450.51750.070*
C50.7881 (2)0.88909 (8)0.42979 (15)0.0552 (4)
H5A0.71790.85150.43900.066*
H5B0.87750.88960.49450.066*
C60.87146 (18)0.88257 (7)0.31544 (14)0.0435 (4)
H60.95210.84660.32290.052*
C70.74651 (17)0.87292 (6)0.20328 (13)0.0366 (3)
H70.81450.86890.13680.044*
C80.96882 (18)0.94334 (7)0.29817 (14)0.0431 (4)
C90.60420 (16)1.04380 (6)0.14722 (12)0.0336 (3)
C100.43367 (18)1.03906 (7)0.16792 (13)0.0415 (3)
H100.39471.00140.19940.050*
C110.32021 (19)1.08937 (8)0.14269 (15)0.0478 (4)
H110.20611.08510.15600.057*
C120.37750 (19)1.14550 (7)0.09793 (14)0.0467 (4)
H120.30191.17940.08180.056*
C130.54701 (18)1.15209 (7)0.07648 (13)0.0422 (3)
H130.58501.19030.04620.051*
C140.65935 (17)1.10152 (6)0.10043 (12)0.0352 (3)
C150.63790 (17)0.81319 (6)0.20774 (13)0.0372 (3)
C160.69939 (18)0.75399 (6)0.17200 (13)0.0402 (3)
C170.5962 (2)0.69992 (7)0.16825 (15)0.0500 (4)
H170.63720.66090.14360.060*
C180.4323 (2)0.70404 (8)0.20125 (16)0.0547 (4)
H180.36310.66770.19820.066*
C190.3707 (2)0.76145 (8)0.23863 (15)0.0515 (4)
H190.26100.76390.26180.062*
C200.47349 (18)0.81559 (7)0.24150 (14)0.0440 (4)
H200.43140.85430.26660.053*
C210.8836 (2)1.15648 (10)0.01693 (18)0.0661 (5)
H21A0.81961.1579−0.05870.099*
H21B1.00301.15190.00790.099*
H21C0.86561.19550.05830.099*
C220.9277 (2)0.69656 (8)0.09613 (18)0.0615 (5)
H22A0.93300.66410.15560.092*
H22B1.04020.70410.07360.092*
H22C0.85380.68250.02930.092*
N10.63559 (14)0.92907 (5)0.18328 (11)0.0358 (3)
O11.12212 (14)0.94572 (6)0.29471 (13)0.0676 (4)
O20.82804 (12)1.10343 (5)0.08112 (10)0.0470 (3)
O30.86248 (14)0.75428 (5)0.14027 (11)0.0532 (3)
H1A0.567 (2)0.9222 (7)0.1162 (15)0.046 (4)*
U11U22U33U12U13U23
C10.0332 (6)0.0317 (6)0.0388 (8)−0.0012 (5)0.0068 (6)−0.0005 (5)
C20.0361 (7)0.0370 (7)0.0508 (9)−0.0062 (6)−0.0013 (6)−0.0005 (6)
C30.0589 (10)0.0535 (9)0.0449 (10)0.0039 (8)−0.0036 (7)−0.0115 (7)
C40.0631 (11)0.0733 (12)0.0390 (9)−0.0011 (9)0.0097 (8)−0.0040 (8)
C50.0598 (10)0.0600 (10)0.0444 (10)−0.0077 (8)−0.0023 (8)0.0127 (8)
C60.0362 (7)0.0377 (7)0.0556 (10)0.0035 (6)−0.0008 (7)0.0060 (7)
C70.0354 (7)0.0309 (6)0.0446 (8)−0.0010 (5)0.0093 (6)0.0003 (6)
C80.0344 (7)0.0488 (8)0.0448 (9)−0.0028 (6)−0.0019 (6)0.0000 (7)
C90.0345 (7)0.0327 (6)0.0336 (8)−0.0008 (5)0.0029 (5)−0.0025 (5)
C100.0378 (7)0.0399 (7)0.0477 (9)−0.0026 (6)0.0091 (6)0.0008 (6)
C110.0347 (7)0.0532 (9)0.0567 (10)0.0050 (7)0.0110 (7)−0.0022 (8)
C120.0453 (8)0.0438 (8)0.0507 (10)0.0126 (7)0.0038 (7)−0.0008 (7)
C130.0473 (8)0.0356 (7)0.0433 (9)0.0015 (6)0.0033 (7)0.0029 (6)
C140.0339 (7)0.0374 (7)0.0346 (7)−0.0021 (6)0.0041 (5)−0.0008 (6)
C150.0397 (7)0.0348 (7)0.0371 (8)−0.0029 (6)0.0031 (6)0.0040 (6)
C160.0436 (8)0.0344 (7)0.0431 (9)−0.0013 (6)0.0060 (6)0.0058 (6)
C170.0620 (10)0.0343 (7)0.0540 (10)−0.0063 (7)0.0073 (8)0.0020 (7)
C180.0591 (10)0.0470 (9)0.0577 (11)−0.0202 (8)0.0045 (8)0.0071 (8)
C190.0427 (8)0.0565 (10)0.0561 (10)−0.0111 (7)0.0089 (7)0.0090 (8)
C200.0431 (8)0.0427 (8)0.0469 (9)−0.0021 (6)0.0086 (7)0.0025 (7)
C210.0463 (9)0.0827 (13)0.0698 (13)−0.0097 (9)0.0081 (8)0.0362 (10)
C220.0672 (11)0.0458 (9)0.0744 (13)0.0096 (8)0.0209 (9)−0.0044 (8)
N10.0344 (6)0.0299 (6)0.0419 (7)−0.0020 (5)−0.0015 (5)−0.0003 (5)
O10.0330 (6)0.0683 (8)0.1010 (11)−0.0040 (5)0.0034 (6)0.0059 (7)
O20.0359 (5)0.0468 (6)0.0593 (7)−0.0022 (4)0.0104 (5)0.0138 (5)
O30.0511 (6)0.0345 (5)0.0773 (8)0.0022 (5)0.0220 (6)−0.0021 (5)
C1—N11.4640 (16)C11—C121.373 (2)
C1—C91.5110 (17)C11—H110.9300
C1—C21.556 (2)C12—C131.387 (2)
C1—H10.9800C12—H120.9300
C2—C81.504 (2)C13—C141.3846 (19)
C2—C31.537 (2)C13—H130.9300
C2—H20.9800C14—O21.3674 (16)
C3—C41.520 (2)C15—C201.3879 (19)
C3—H3A0.9700C15—C161.4021 (19)
C3—H3B0.9700C16—O31.3684 (17)
C4—C51.522 (2)C16—C171.3868 (19)
C4—H4A0.9700C17—C181.383 (2)
C4—H4B0.9700C17—H170.9300
C5—C61.534 (2)C18—C191.376 (2)
C5—H5A0.9700C18—H180.9300
C5—H5B0.9700C19—C201.386 (2)
C6—C81.504 (2)C19—H190.9300
C6—C71.552 (2)C20—H200.9300
C6—H60.9800C21—O21.4227 (18)
C7—N11.4636 (16)C21—H21A0.9600
C7—C151.5136 (17)C21—H21B0.9600
C7—H70.9800C21—H21C0.9600
C8—O11.2109 (17)C22—O31.4216 (18)
C9—C101.3889 (18)C22—H22A0.9600
C9—C141.4044 (18)C22—H22B0.9600
C10—C111.388 (2)C22—H22C0.9600
C10—H100.9300N1—H1A0.907 (17)
N1—C1—C9109.89 (10)C11—C10—H10119.3
N1—C1—C2109.30 (11)C9—C10—H10119.3
C9—C1—C2112.12 (11)C12—C11—C10119.60 (13)
N1—C1—H1108.5C12—C11—H11120.2
C9—C1—H1108.5C10—C11—H11120.2
C2—C1—H1108.5C11—C12—C13120.61 (13)
C8—C2—C3109.05 (13)C11—C12—H12119.7
C8—C2—C1106.62 (11)C13—C12—H12119.7
C3—C2—C1114.94 (12)C14—C13—C12119.63 (13)
C8—C2—H2108.7C14—C13—H13120.2
C3—C2—H2108.7C12—C13—H13120.2
C1—C2—H2108.7O2—C14—C13123.71 (12)
C4—C3—C2114.56 (13)O2—C14—C9115.45 (12)
C4—C3—H3A108.6C13—C14—C9120.84 (12)
C2—C3—H3A108.6C20—C15—C16118.20 (13)
C4—C3—H3B108.6C20—C15—C7121.64 (12)
C2—C3—H3B108.6C16—C15—C7120.09 (12)
H3A—C3—H3B107.6O3—C16—C17123.81 (13)
C3—C4—C5112.60 (14)O3—C16—C15115.77 (12)
C3—C4—H4A109.1C17—C16—C15120.41 (13)
C5—C4—H4A109.1C18—C17—C16119.98 (15)
C3—C4—H4B109.1C18—C17—H17120.0
C5—C4—H4B109.1C16—C17—H17120.0
H4A—C4—H4B107.8C19—C18—C17120.47 (14)
C4—C5—C6114.58 (13)C19—C18—H18119.8
C4—C5—H5A108.6C17—C18—H18119.8
C6—C5—H5A108.6C18—C19—C20119.51 (14)
C4—C5—H5B108.6C18—C19—H19120.2
C6—C5—H5B108.6C20—C19—H19120.2
H5A—C5—H5B107.6C19—C20—C15121.41 (14)
C8—C6—C5107.83 (13)C19—C20—H20119.3
C8—C6—C7106.67 (12)C15—C20—H20119.3
C5—C6—C7115.74 (12)O2—C21—H21A109.5
C8—C6—H6108.8O2—C21—H21B109.5
C5—C6—H6108.8H21A—C21—H21B109.5
C7—C6—H6108.8O2—C21—H21C109.5
N1—C7—C15109.52 (11)H21A—C21—H21C109.5
N1—C7—C6110.07 (11)H21B—C21—H21C109.5
C15—C7—C6112.93 (11)O3—C22—H22A109.5
N1—C7—H7108.1O3—C22—H22B109.5
C15—C7—H7108.1H22A—C22—H22B109.5
C6—C7—H7108.1O3—C22—H22C109.5
O1—C8—C6124.11 (14)H22A—C22—H22C109.5
O1—C8—C2124.27 (14)H22B—C22—H22C109.5
C6—C8—C2111.62 (12)C7—N1—C1113.70 (10)
C10—C9—C14117.90 (12)C7—N1—H1A107.5 (10)
C10—C9—C1122.25 (12)C1—N1—H1A108.7 (10)
C14—C9—C1119.85 (11)C14—O2—C21117.45 (12)
C11—C10—C9121.42 (13)C16—O3—C22118.24 (12)
N1—C1—C2—C858.24 (14)C11—C12—C13—C140.0 (2)
C9—C1—C2—C8−179.66 (11)C12—C13—C14—O2179.37 (14)
N1—C1—C2—C3−62.72 (15)C12—C13—C14—C9−0.6 (2)
C9—C1—C2—C359.38 (15)C10—C9—C14—O2−179.60 (12)
C8—C2—C3—C4−51.29 (18)C1—C9—C14—O2−0.42 (19)
C1—C2—C3—C468.33 (18)C10—C9—C14—C130.4 (2)
C2—C3—C4—C543.6 (2)C1—C9—C14—C13179.54 (13)
C3—C4—C5—C6−45.3 (2)N1—C7—C15—C20−26.68 (19)
C4—C5—C6—C854.13 (17)C6—C7—C15—C2096.37 (16)
C4—C5—C6—C7−65.18 (18)N1—C7—C15—C16150.24 (13)
C8—C6—C7—N1−57.03 (14)C6—C7—C15—C16−86.71 (16)
C5—C6—C7—N162.93 (15)C20—C15—C16—O3−179.66 (13)
C8—C6—C7—C15−179.76 (11)C7—C15—C16—O33.3 (2)
C5—C6—C7—C15−59.81 (16)C20—C15—C16—C171.4 (2)
C5—C6—C8—O1117.71 (18)C7—C15—C16—C17−175.58 (13)
C7—C6—C8—O1−117.36 (17)O3—C16—C17—C18−179.58 (15)
C5—C6—C8—C2−62.84 (16)C15—C16—C17—C18−0.8 (2)
C7—C6—C8—C262.09 (16)C16—C17—C18—C19−0.4 (3)
C3—C2—C8—O1−118.78 (18)C17—C18—C19—C200.9 (3)
C1—C2—C8—O1116.57 (17)C18—C19—C20—C15−0.2 (2)
C3—C2—C8—C661.77 (16)C16—C15—C20—C19−1.0 (2)
C1—C2—C8—C6−62.88 (16)C7—C15—C20—C19176.01 (14)
N1—C1—C9—C1017.27 (18)C15—C7—N1—C1−177.14 (11)
C2—C1—C9—C10−104.49 (15)C6—C7—N1—C158.14 (15)
N1—C1—C9—C14−161.87 (12)C9—C1—N1—C7178.03 (11)
C2—C1—C9—C1476.37 (16)C2—C1—N1—C7−58.54 (15)
C14—C9—C10—C110.4 (2)C13—C14—O2—C21−9.8 (2)
C1—C9—C10—C11−178.73 (14)C9—C14—O2—C21170.19 (14)
C9—C10—C11—C12−1.0 (2)C17—C16—O3—C222.8 (2)
C10—C11—C12—C130.7 (2)C15—C16—O3—C22−176.03 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cg1i0.90 (4)2.75 (4)3.58 (5)152.87 (3)
Table 1

N—H⋯π geometry (Å, ° )

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1ACg1i0.90 (4)2.75 (4)3.58 (5)152.87 (3)

Symmetry code: (i) . Cg1 is the centroid of the C9–C14 ring.

  5 in total

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Authors:  David Barker; Diana H-S Lin; Jane E Carland; Cindy P-Y Chu; Mary Chebib; Margaret A Brimble; G Paul Savage; Malcolm D McLeod
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3.  Nudicauline and elatine as potent norditerpenoid ligands at rat neuronal alpha-bungarotoxin binding sites: importance of the 2-(methylsuccinimido)benzoyl moiety for neuronal nicotinic acetylcholine receptor binding.

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4.  2,4-Bis(2-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Kwon Taek Lim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26

5.  2,4-Bis(2-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-20
  5 in total
  7 in total

1.  2,4-Bis(3-methoxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-04

2.  1-Methyl-2,4-bis-(2-methoxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-18

3.  2,4-Bis(4-propoxyphen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-05

4.  2,4-Bis(2-methyl-phen-yl)-3-aza-bicyclo[3.3.1]nonan-9-one O-methyl-oxime.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-30

5.  2,4-Bis(4-but-oxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-16

6.  2,4-Bis(2-eth-oxy-phen-yl)-7-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Dong Ho Park; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-20

7.  2,4-Bis(2-eth-oxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  Dong Ho Park; V Ramkumar; P Parthiban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-03
  7 in total

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