Literature DB >> 21582870

2,4-Bis(2-fluoro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

P Parthiban, V Ramkumar, Yeon Tae Jeong.   

Abstract

The title compound, C(20)H(19)F(2)NO, exists in a twin-chair conformation with an equatorial orientation of the two 2-fluoro-phenyl groups on both sides of the secondary amine group. The benzene rings are orientated at an angle of 25.68 (4)° with respect to one another and the F atoms point upwards (towards the carbonyl group). The crystal is stabilized by an inter-molecular N-H⋯π inter-action.

Entities:  

Year:  2009        PMID: 21582870      PMCID: PMC2969275          DOI: 10.1107/S1600536809022065

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

3-Aza­bicyclo­nona­nes are present in numerous naturally occurring diterpenoid/norditerpenoid alkaloids and display broad-spectrum biological activity, see: Hardick et al. (1996 ▶); Jeyaraman et al. (1981 ▶); For related structures, see: Parthiban et al. (2008a ▶,b ▶, 2009 ▶); Parthiban, Ramkumar, Kim et al. (2008 ▶); Parthiban, Ramkumar, Santan et al. (2008 ▶); Parthiban, Thirumurugan et al. (2008 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C20H19F2NO M = 327.36 Triclinic, a = 7.4699 (3) Å b = 10.6621 (4) Å c = 10.7131 (4) Å α = 78.027 (2)° β = 78.946 (2)° γ = 87.201 (2)° V = 819.16 (5) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 298 K 0.42 × 0.38 × 0.12 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.960, T max = 0.989 11219 measured reflections 3913 independent reflections 2564 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.156 S = 0.81 3913 reflections 221 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809022065/bq2146sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022065/bq2146Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H19F2NOZ = 2
Mr = 327.36F(000) = 344
Triclinic, P1Dx = 1.327 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.4699 (3) ÅCell parameters from 3420 reflections
b = 10.6621 (4) Åθ = 2.5–27.4°
c = 10.7131 (4) ŵ = 0.10 mm1
α = 78.027 (2)°T = 298 K
β = 78.946 (2)°Block, colourless
γ = 87.201 (2)°0.42 × 0.38 × 0.12 mm
V = 819.16 (5) Å3
Bruker APEXII CCD area-detector diffractometer3913 independent reflections
Radiation source: fine-focus sealed tube2564 reflections with I > 2σ(I)
graphiteRint = 0.021
φ and ω scansθmax = 28.5°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 1999)h = −9→9
Tmin = 0.960, Tmax = 0.989k = −14→14
11219 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.156H atoms treated by a mixture of independent and constrained refinement
S = 0.81w = 1/[σ2(Fo2) + (0.1P)2 + 0.2685P] where P = (Fo2 + 2Fc2)/3
3913 reflections(Δ/σ)max < 0.001
221 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2684 (2)0.16060 (16)0.96799 (14)0.0419 (4)
H10.34990.08690.95850.050*
C20.3813 (2)0.27242 (18)0.98432 (15)0.0481 (4)
H20.44080.24311.05940.058*
C30.2715 (3)0.39499 (18)1.00204 (17)0.0546 (5)
H3A0.16940.37301.07340.066*
H3B0.34850.45321.02610.066*
C40.1990 (3)0.46430 (18)0.88289 (19)0.0595 (5)
H4A0.16070.55020.89410.071*
H4B0.09250.41960.87580.071*
C50.3381 (3)0.47348 (18)0.75758 (18)0.0591 (5)
H5A0.42430.54030.75260.071*
H5B0.27550.49870.68470.071*
C60.4445 (2)0.34774 (19)0.74473 (16)0.0506 (4)
H60.54330.36510.66890.061*
C70.3290 (2)0.23549 (16)0.73240 (14)0.0431 (4)
H70.41010.16160.72340.052*
C80.5261 (2)0.3061 (2)0.86420 (17)0.0540 (5)
C90.1194 (2)0.12155 (15)1.08599 (14)0.0397 (4)
C10−0.0618 (2)0.15942 (16)1.08968 (16)0.0463 (4)
H10−0.09710.20741.01530.056*
C11−0.1906 (3)0.12692 (19)1.20224 (18)0.0560 (5)
H11−0.31110.15351.20260.067*
C12−0.1423 (3)0.05585 (19)1.31351 (17)0.0595 (5)
H12−0.22940.03551.38910.071*
C130.0352 (3)0.01505 (18)1.31262 (16)0.0569 (5)
H130.0693−0.03471.38660.068*
C140.1613 (2)0.04921 (16)1.20018 (15)0.0470 (4)
C150.2390 (2)0.26888 (15)0.61458 (14)0.0415 (4)
C160.3352 (2)0.25928 (19)0.49306 (16)0.0524 (4)
C170.2607 (3)0.2853 (2)0.38267 (16)0.0638 (5)
H170.33060.27670.30310.077*
C180.0817 (3)0.3240 (2)0.39162 (17)0.0641 (5)
H180.02890.34190.31800.077*
C19−0.0185 (3)0.3362 (2)0.50969 (18)0.0586 (5)
H19−0.13960.36300.51580.070*
C200.0587 (2)0.30888 (17)0.62043 (15)0.0483 (4)
H20−0.01160.31760.69980.058*
F10.33764 (16)0.01112 (12)1.20093 (11)0.0726 (4)
F20.51212 (16)0.21980 (16)0.48284 (11)0.0853 (4)
N10.19010 (18)0.19950 (13)0.85064 (11)0.0397 (3)
O10.68765 (18)0.30314 (19)0.86537 (14)0.0831 (5)
H1A0.129 (3)0.1358 (19)0.8399 (17)0.050 (5)*
U11U22U33U12U13U23
C10.0392 (9)0.0502 (9)0.0351 (7)0.0105 (7)−0.0090 (6)−0.0071 (6)
C20.0358 (9)0.0718 (12)0.0383 (8)−0.0009 (8)−0.0129 (7)−0.0095 (7)
C30.0525 (11)0.0631 (11)0.0508 (9)−0.0147 (8)−0.0022 (8)−0.0209 (8)
C40.0605 (12)0.0489 (10)0.0693 (12)0.0008 (8)−0.0086 (9)−0.0159 (9)
C50.0642 (13)0.0551 (11)0.0563 (10)−0.0146 (9)−0.0138 (9)−0.0020 (8)
C60.0322 (9)0.0761 (12)0.0394 (8)−0.0063 (8)−0.0011 (6)−0.0058 (8)
C70.0383 (9)0.0550 (9)0.0346 (7)0.0099 (7)−0.0049 (6)−0.0096 (6)
C80.0326 (9)0.0790 (13)0.0511 (9)−0.0024 (8)−0.0082 (7)−0.0138 (9)
C90.0453 (9)0.0394 (8)0.0346 (7)0.0037 (6)−0.0101 (6)−0.0068 (6)
C100.0446 (10)0.0486 (9)0.0438 (8)0.0023 (7)−0.0109 (7)−0.0035 (7)
C110.0452 (10)0.0608 (11)0.0579 (10)−0.0033 (8)−0.0012 (8)−0.0098 (8)
C120.0694 (14)0.0598 (11)0.0437 (9)−0.0146 (10)0.0050 (8)−0.0087 (8)
C130.0797 (14)0.0511 (10)0.0377 (8)−0.0041 (9)−0.0130 (8)−0.0011 (7)
C140.0542 (11)0.0456 (9)0.0423 (8)0.0080 (7)−0.0159 (7)−0.0064 (7)
C150.0440 (9)0.0463 (9)0.0330 (7)−0.0007 (7)−0.0048 (6)−0.0073 (6)
C160.0469 (10)0.0682 (12)0.0413 (8)−0.0012 (8)−0.0013 (7)−0.0152 (8)
C170.0727 (14)0.0846 (14)0.0337 (8)−0.0122 (11)−0.0027 (8)−0.0149 (8)
C180.0746 (14)0.0775 (14)0.0419 (9)−0.0108 (11)−0.0218 (9)−0.0032 (9)
C190.0521 (11)0.0728 (13)0.0504 (10)0.0027 (9)−0.0182 (8)−0.0036 (8)
C200.0469 (10)0.0581 (10)0.0377 (8)0.0034 (8)−0.0067 (7)−0.0068 (7)
F10.0669 (8)0.0863 (9)0.0600 (7)0.0256 (6)−0.0257 (6)0.0019 (6)
F20.0542 (7)0.1445 (13)0.0570 (7)0.0195 (7)0.0026 (5)−0.0363 (7)
N10.0402 (8)0.0478 (8)0.0312 (6)−0.0022 (6)−0.0083 (5)−0.0062 (5)
O10.0315 (8)0.1455 (16)0.0696 (9)−0.0015 (8)−0.0105 (6)−0.0143 (9)
C1—N11.4617 (19)C9—C141.386 (2)
C1—C91.516 (2)C9—C101.389 (2)
C1—C21.551 (3)C10—C111.384 (2)
C1—H10.9800C10—H100.9300
C2—C81.506 (2)C11—C121.374 (3)
C2—C31.535 (3)C11—H110.9300
C2—H20.9800C12—C131.374 (3)
C3—C41.518 (3)C12—H120.9300
C3—H3A0.9700C13—C141.374 (2)
C3—H3B0.9700C13—H130.9300
C4—C51.520 (3)C14—F11.361 (2)
C4—H4A0.9700C15—C161.382 (2)
C4—H4B0.9700C15—C201.386 (2)
C5—C61.542 (3)C16—F21.358 (2)
C5—H5A0.9700C16—C171.373 (3)
C5—H5B0.9700C17—C181.371 (3)
C6—C81.498 (2)C17—H170.9300
C6—C71.550 (3)C18—C191.368 (3)
C6—H60.9800C18—H180.9300
C7—N11.4703 (19)C19—C201.388 (2)
C7—C151.513 (2)C19—H190.9300
C7—H70.9800C20—H200.9300
C8—O11.208 (2)N1—H1A0.88 (2)
N1—C1—C9110.56 (13)O1—C8—C6124.57 (16)
N1—C1—C2109.45 (13)O1—C8—C2123.79 (16)
C9—C1—C2110.71 (13)C6—C8—C2111.61 (14)
N1—C1—H1108.7C14—C9—C10116.13 (14)
C9—C1—H1108.7C14—C9—C1120.38 (14)
C2—C1—H1108.7C10—C9—C1123.42 (13)
C8—C2—C3107.64 (15)C11—C10—C9121.07 (15)
C8—C2—C1107.86 (14)C11—C10—H10119.5
C3—C2—C1114.94 (14)C9—C10—H10119.5
C8—C2—H2108.8C12—C11—C10120.71 (18)
C3—C2—H2108.8C12—C11—H11119.6
C1—C2—H2108.8C10—C11—H11119.6
C4—C3—C2114.55 (14)C13—C12—C11119.71 (16)
C4—C3—H3A108.6C13—C12—H12120.1
C2—C3—H3A108.6C11—C12—H12120.1
C4—C3—H3B108.6C14—C13—C12118.66 (16)
C2—C3—H3B108.6C14—C13—H13120.7
H3A—C3—H3B107.6C12—C13—H13120.7
C3—C4—C5113.26 (16)F1—C14—C13118.33 (15)
C3—C4—H4A108.9F1—C14—C9117.96 (15)
C5—C4—H4A108.9C13—C14—C9123.70 (16)
C3—C4—H4B108.9C16—C15—C20116.11 (15)
C5—C4—H4B108.9C16—C15—C7120.57 (15)
H4A—C4—H4B107.7C20—C15—C7123.31 (13)
C4—C5—C6114.00 (15)F2—C16—C17118.29 (15)
C4—C5—H5A108.8F2—C16—C15118.14 (15)
C6—C5—H5A108.8C17—C16—C15123.57 (17)
C4—C5—H5B108.8C18—C17—C16118.98 (16)
C6—C5—H5B108.8C18—C17—H17120.5
H5A—C5—H5B107.6C16—C17—H17120.5
C8—C6—C5107.17 (15)C19—C18—C17119.53 (17)
C8—C6—C7107.89 (15)C19—C18—H18120.2
C5—C6—C7115.27 (14)C17—C18—H18120.2
C8—C6—H6108.8C18—C19—C20120.73 (18)
C5—C6—H6108.8C18—C19—H19119.6
C7—C6—H6108.8C20—C19—H19119.6
N1—C7—C15110.02 (13)C15—C20—C19121.07 (15)
N1—C7—C6109.92 (13)C15—C20—H20119.5
C15—C7—C6111.89 (13)C19—C20—H20119.5
N1—C7—H7108.3C1—N1—C7112.94 (12)
C15—C7—H7108.3C1—N1—H1A109.7 (12)
C6—C7—H7108.3C7—N1—H1A106.9 (12)
N1—C1—C2—C8−57.90 (16)C9—C10—C11—C12−0.1 (3)
C9—C1—C2—C8179.98 (13)C10—C11—C12—C13−0.9 (3)
N1—C1—C2—C362.16 (17)C11—C12—C13—C141.4 (3)
C9—C1—C2—C3−59.96 (17)C12—C13—C14—F1178.41 (16)
C8—C2—C3—C452.2 (2)C12—C13—C14—C9−0.9 (3)
C1—C2—C3—C4−68.03 (19)C10—C9—C14—F1−179.44 (15)
C2—C3—C4—C5−43.7 (2)C1—C9—C14—F1−2.3 (2)
C3—C4—C5—C644.4 (2)C10—C9—C14—C13−0.1 (3)
C4—C5—C6—C8−53.8 (2)C1—C9—C14—C13177.01 (16)
C4—C5—C6—C766.3 (2)N1—C7—C15—C16−155.80 (16)
C8—C6—C7—N156.93 (17)C6—C7—C15—C1681.71 (19)
C5—C6—C7—N1−62.77 (17)N1—C7—C15—C2023.5 (2)
C8—C6—C7—C15179.48 (13)C6—C7—C15—C20−98.96 (18)
C5—C6—C7—C1559.78 (17)C20—C15—C16—F2−179.68 (16)
C5—C6—C8—O1−113.1 (2)C7—C15—C16—F2−0.3 (3)
C7—C6—C8—O1122.2 (2)C20—C15—C16—C17−0.9 (3)
C5—C6—C8—C264.94 (19)C7—C15—C16—C17178.47 (18)
C7—C6—C8—C2−59.75 (19)F2—C16—C17—C18179.38 (18)
C3—C2—C8—O1113.9 (2)C15—C16—C17—C180.6 (3)
C1—C2—C8—O1−121.6 (2)C16—C17—C18—C190.1 (3)
C3—C2—C8—C6−64.20 (19)C17—C18—C19—C20−0.4 (3)
C1—C2—C8—C660.36 (19)C16—C15—C20—C190.5 (3)
N1—C1—C9—C14162.27 (15)C7—C15—C20—C19−178.81 (17)
C2—C1—C9—C14−76.27 (19)C18—C19—C20—C150.1 (3)
N1—C1—C9—C10−20.8 (2)C9—C1—N1—C7−178.60 (13)
C2—C1—C9—C10100.64 (18)C2—C1—N1—C759.20 (17)
C14—C9—C10—C110.6 (2)C15—C7—N1—C1177.51 (13)
C1—C9—C10—C11−176.38 (16)C6—C7—N1—C1−58.84 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cgi0.90 (4)2.72 (2)3.58 (16)167.3 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1ACgi0.90 (4)2.72 (2)3.58 (16)167.3 (19)

Symmetry code: (i) . Cg is the centroid of C9–C14 phenyl ring.

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Nudicauline and elatine as potent norditerpenoid ligands at rat neuronal alpha-bungarotoxin binding sites: importance of the 2-(methylsuccinimido)benzoyl moiety for neuronal nicotinic acetylcholine receptor binding.

Authors:  D J Hardick; I S Blagbrough; G Cooper; B V Potter; T Critchley; S Wonnacott
Journal:  J Med Chem       Date:  1996-11-22       Impact factor: 7.446

3.  2,4-Bis(3-fluoro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; K Thirumurugan; V Ramkumar; S Pazhamalai; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

4.  2,4-Bis(2-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Kwon Taek Lim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26

5.  2,4-Bis(4-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; S Kabilan; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25

6.  2,4-Bis(2-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Se Mo Son; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-20

7.  2,4-Bis(3-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Kwon Taek Lim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-13

8.  2,4-Bis(4-fluoro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; H D Santan; Jong Tae Kim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06
  8 in total
  3 in total

1.  2,4-Bis(2-fluoro-phen-yl)-1-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-19

2.  2,4-Bis(3-methoxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-04

3.  1-Methyl-2,4-bis-(2-methoxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-18
  3 in total

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