Literature DB >> 26594482

Crystal structure of 2-(2,4-diphenyl-3-aza-bicyclo-[3.3.1]nonan-9-yl-idene)aceto-nitrile.

K Priya1, K Saravanan1, S Kabilan1, S Selvanayagam2.   

Abstract

In the title 3-aza-bicyclo-nonane derivative, C22H22N2, both the fused piperidine and cyclo-hexane rings adopt a chair conformation. The phenyl rings attached to the central aza-bicylononane fragment in an equatorial orientation are inclined to each other at 23.7 (1)°. The amino group is not involved in any hydrogen bonding, so the crystal packing is stabilized only by van der Waals forces.

Entities:  

Keywords:  3-aza­bicyclo­nonane derivatives; chair conformation; crystal structure

Year:  2015        PMID: 26594482      PMCID: PMC4647352          DOI: 10.1107/S2056989015017740

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activities of 3-aza­bicyclo­nonane derivatives, see: Silver et al. (1967 ▸); Fleming & Wang (2003 ▸); Miller & Manson (2001 ▸); Fatiadi (1983 ▸). For related structures, see: Parthiban et al. (2008a ▸,b ▸,c ▸,d ▸,e ▸).

Experimental

Crystal data

C22H22N2 M = 314.41 Triclinic, a = 7.9672 (5) Å b = 8.3129 (5) Å c = 13.6069 (8) Å α = 89.607 (4)° β = 81.886 (4)° γ = 84.469 (4)° V = 888.00 (9) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 296 K 0.23 × 0.21 × 0.19 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 14326 measured reflections 3814 independent reflections 2375 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.131 S = 1.05 3814 reflections 221 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.13 e Å−3 Δρmin = −0.16 e Å−3

Data collection: SMART (Bruker, 2001 ▸); cell refinement: SAINT (Bruker, 2001 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014/7 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸); software used to prepare material for publication: SHELXL2014/7 and PLATON. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015017740/cv5495sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015017740/cv5495Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015017740/cv5495Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015017740/cv5495fig1.tif The mol­ecular structure of the title compound with atom labelling. Displacement ellipsoids are drawn at the 40% probability level. CCDC reference: 1426330 Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H22N2Z = 2
Mr = 314.41F(000) = 336
Triclinic, P1Dx = 1.176 Mg m3
a = 7.9672 (5) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.3129 (5) ÅCell parameters from 9878 reflections
c = 13.6069 (8) Åθ = 2.3–27.2°
α = 89.607 (4)°µ = 0.07 mm1
β = 81.886 (4)°T = 296 K
γ = 84.469 (4)°Block, colourless
V = 888.00 (9) Å30.23 × 0.21 × 0.19 mm
Bruker SMART APEX CCD area-detector diffractometerRint = 0.034
Radiation source: fine-focus sealed tubeθmax = 27.2°, θmin = 1.5°
ω scansh = −10→10
14326 measured reflectionsk = −9→10
3814 independent reflectionsl = −17→17
2375 reflections with I > 2σ(I)
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.047H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.131w = 1/[σ2(Fo2) + (0.0623P)2 + 0.0228P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
3814 reflectionsΔρmax = 0.13 e Å3
221 parametersΔρmin = −0.16 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
N10.30954 (14)0.47358 (15)0.20403 (9)0.0491 (3)
H1N0.3354 (19)0.5473 (19)0.1565 (12)0.069 (5)*
N20.6722 (2)0.17287 (19)0.51383 (11)0.0845 (5)
C10.21406 (17)0.55407 (17)0.29305 (10)0.0494 (4)
H1A0.28640.62910.31780.059*
C20.17259 (18)0.42725 (18)0.37503 (11)0.0543 (4)
H20.12090.48460.43620.065*
C30.33678 (17)0.33590 (17)0.39353 (10)0.0518 (4)
C40.42543 (17)0.24949 (17)0.30202 (10)0.0503 (4)
H40.53260.19330.31710.060*
C50.46745 (16)0.37958 (17)0.22222 (10)0.0465 (3)
H50.53950.45320.24850.056*
C60.05227 (17)0.65065 (17)0.27059 (11)0.0511 (4)
C7−0.0303 (2)0.6131 (2)0.19207 (13)0.0661 (5)
H70.01670.52940.14870.079*
C8−0.1827 (2)0.6993 (2)0.17744 (15)0.0808 (5)
H8−0.23750.67310.12460.097*
C9−0.2528 (2)0.8236 (2)0.24123 (16)0.0825 (6)
H9−0.35500.88140.23140.099*
C10−0.1720 (2)0.8623 (2)0.31933 (15)0.0730 (5)
H10−0.21950.94590.36260.088*
C11−0.01988 (19)0.77658 (18)0.33353 (12)0.0607 (4)
H110.03480.80390.38620.073*
C120.56488 (17)0.30391 (16)0.12778 (10)0.0475 (3)
C130.48803 (19)0.2693 (2)0.04674 (11)0.0614 (4)
H130.37210.29810.04780.074*
C140.5812 (2)0.1923 (2)−0.03620 (12)0.0710 (5)
H140.52700.1690−0.08990.085*
C150.7520 (2)0.1501 (2)−0.03997 (13)0.0717 (5)
H150.81390.0983−0.09590.086*
C160.8314 (2)0.1848 (2)0.03951 (14)0.0772 (5)
H160.94780.15710.03750.093*
C170.73838 (18)0.2608 (2)0.12246 (12)0.0660 (5)
H170.79330.28370.17590.079*
C180.05238 (18)0.3031 (2)0.35037 (12)0.0643 (4)
H18A0.02310.23830.40870.077*
H18B−0.05200.36060.33430.077*
C190.12981 (19)0.19133 (19)0.26393 (12)0.0634 (4)
H19A0.12980.25070.20230.076*
H19B0.05970.10280.26120.076*
C200.31190 (19)0.12269 (17)0.27312 (12)0.0588 (4)
H20A0.36350.07370.21020.071*
H20B0.30800.03820.32270.071*
C210.39261 (19)0.33330 (18)0.48167 (11)0.0575 (4)
H210.32780.39240.53390.069*
C220.5476 (2)0.2435 (2)0.49907 (11)0.0613 (4)
U11U22U33U12U13U23
N10.0458 (7)0.0516 (7)0.0477 (7)0.0043 (5)−0.0046 (5)0.0050 (6)
N20.0855 (11)0.0958 (12)0.0753 (10)0.0097 (9)−0.0348 (8)0.0004 (9)
C10.0453 (8)0.0515 (8)0.0503 (9)0.0025 (6)−0.0075 (6)−0.0030 (7)
C20.0505 (8)0.0635 (10)0.0454 (8)0.0066 (7)−0.0029 (6)−0.0003 (7)
C30.0515 (8)0.0557 (9)0.0477 (9)−0.0010 (7)−0.0084 (7)0.0047 (7)
C40.0473 (8)0.0552 (9)0.0479 (8)0.0069 (6)−0.0127 (6)0.0020 (7)
C50.0407 (7)0.0513 (8)0.0474 (8)−0.0005 (6)−0.0084 (6)−0.0022 (7)
C60.0474 (8)0.0488 (8)0.0552 (9)0.0015 (6)−0.0043 (7)0.0033 (7)
C70.0596 (10)0.0666 (10)0.0712 (11)0.0116 (8)−0.0180 (8)−0.0069 (9)
C80.0714 (11)0.0835 (13)0.0895 (14)0.0119 (9)−0.0310 (10)−0.0014 (11)
C90.0612 (11)0.0734 (12)0.1101 (16)0.0195 (9)−0.0200 (10)0.0072 (11)
C100.0662 (11)0.0580 (10)0.0882 (13)0.0135 (8)−0.0014 (9)−0.0027 (9)
C110.0609 (9)0.0528 (9)0.0658 (10)0.0046 (7)−0.0068 (8)−0.0015 (8)
C120.0451 (8)0.0486 (8)0.0479 (8)−0.0007 (6)−0.0067 (6)0.0008 (7)
C130.0540 (9)0.0757 (11)0.0533 (10)0.0053 (8)−0.0112 (7)−0.0042 (8)
C140.0782 (12)0.0826 (12)0.0512 (10)0.0030 (9)−0.0127 (8)−0.0090 (9)
C150.0770 (12)0.0732 (11)0.0576 (10)0.0086 (9)0.0052 (9)−0.0101 (9)
C160.0508 (9)0.0956 (14)0.0791 (13)0.0118 (9)−0.0002 (9)−0.0140 (11)
C170.0487 (9)0.0839 (12)0.0641 (11)0.0048 (8)−0.0100 (7)−0.0135 (9)
C180.0487 (9)0.0721 (11)0.0706 (11)−0.0041 (7)−0.0051 (7)0.0172 (9)
C190.0581 (9)0.0599 (10)0.0754 (11)−0.0145 (7)−0.0147 (8)0.0076 (9)
C200.0652 (10)0.0510 (9)0.0601 (10)−0.0017 (7)−0.0112 (7)0.0066 (8)
C210.0621 (9)0.0621 (10)0.0472 (9)0.0014 (7)−0.0094 (7)0.0002 (7)
C220.0708 (11)0.0681 (10)0.0478 (9)−0.0033 (8)−0.0204 (8)0.0011 (8)
N1—C11.4651 (17)C10—C111.383 (2)
N1—C51.4665 (16)C10—H100.9300
N1—H1N0.904 (16)C11—H110.9300
N2—C221.1461 (18)C12—C131.379 (2)
C1—C61.5191 (18)C12—C171.3860 (18)
C1—C21.553 (2)C13—C141.385 (2)
C1—H1A0.9800C13—H130.9300
C2—C31.5000 (18)C14—C151.365 (2)
C2—C181.543 (2)C14—H140.9300
C2—H20.9800C15—C161.373 (2)
C3—C211.3361 (19)C15—H150.9300
C3—C41.4939 (19)C16—C171.381 (2)
C4—C201.541 (2)C16—H160.9300
C4—C51.5529 (19)C17—H170.9300
C4—H40.9800C18—C191.526 (2)
C5—C121.5116 (18)C18—H18A0.9700
C5—H50.9800C18—H18B0.9700
C6—C71.384 (2)C19—C201.5286 (19)
C6—C111.385 (2)C19—H19A0.9700
C7—C81.388 (2)C19—H19B0.9700
C7—H70.9300C20—H20A0.9700
C8—C91.378 (2)C20—H20B0.9700
C8—H80.9300C21—C221.428 (2)
C9—C101.373 (3)C21—H210.9300
C9—H90.9300
C1—N1—C5113.55 (11)C11—C10—H10120.1
C1—N1—H1N110.1 (10)C10—C11—C6121.05 (16)
C5—N1—H1N108.7 (9)C10—C11—H11119.5
N1—C1—C6111.71 (11)C6—C11—H11119.5
N1—C1—C2109.87 (11)C13—C12—C17117.63 (14)
C6—C1—C2110.76 (11)C13—C12—C5123.02 (12)
N1—C1—H1A108.1C17—C12—C5119.30 (12)
C6—C1—H1A108.1C12—C13—C14120.89 (14)
C2—C1—H1A108.1C12—C13—H13119.6
C3—C2—C18107.86 (12)C14—C13—H13119.6
C3—C2—C1108.18 (11)C15—C14—C13120.67 (15)
C18—C2—C1115.18 (12)C15—C14—H14119.7
C3—C2—H2108.5C13—C14—H14119.7
C18—C2—H2108.5C14—C15—C16119.43 (15)
C1—C2—H2108.5C14—C15—H15120.3
C21—C3—C4125.54 (13)C16—C15—H15120.3
C21—C3—C2123.15 (14)C15—C16—C17119.93 (15)
C4—C3—C2111.31 (11)C15—C16—H16120.0
C3—C4—C20108.48 (12)C17—C16—H16120.0
C3—C4—C5107.33 (11)C16—C17—C12121.45 (15)
C20—C4—C5115.21 (11)C16—C17—H17119.3
C3—C4—H4108.6C12—C17—H17119.3
C20—C4—H4108.6C19—C18—C2113.21 (12)
C5—C4—H4108.6C19—C18—H18A108.9
N1—C5—C12111.71 (11)C2—C18—H18A108.9
N1—C5—C4109.50 (10)C19—C18—H18B108.9
C12—C5—C4111.25 (11)C2—C18—H18B108.9
N1—C5—H5108.1H18A—C18—H18B107.7
C12—C5—H5108.1C18—C19—C20112.39 (13)
C4—C5—H5108.1C18—C19—H19A109.1
C7—C6—C11118.53 (14)C20—C19—H19A109.1
C7—C6—C1122.50 (13)C18—C19—H19B109.1
C11—C6—C1118.91 (13)C20—C19—H19B109.1
C6—C7—C8120.54 (16)H19A—C19—H19B107.9
C6—C7—H7119.7C19—C20—C4113.88 (12)
C8—C7—H7119.7C19—C20—H20A108.8
C9—C8—C7120.01 (17)C4—C20—H20A108.8
C9—C8—H8120.0C19—C20—H20B108.8
C7—C8—H8120.0C4—C20—H20B108.8
C10—C9—C8120.03 (16)H20A—C20—H20B107.7
C10—C9—H9120.0C3—C21—C22122.75 (14)
C8—C9—H9120.0C3—C21—H21118.6
C9—C10—C11119.84 (17)C22—C21—H21118.6
C9—C10—H10120.1N2—C22—C21179.18 (18)
C5—N1—C1—C6179.66 (11)C6—C7—C8—C90.1 (3)
C5—N1—C1—C2−57.00 (15)C7—C8—C9—C100.0 (3)
N1—C1—C2—C355.94 (15)C8—C9—C10—C110.3 (3)
C6—C1—C2—C3179.83 (11)C9—C10—C11—C6−0.6 (3)
N1—C1—C2—C18−64.80 (15)C7—C6—C11—C100.7 (2)
C6—C1—C2—C1859.09 (16)C1—C6—C11—C10−176.43 (14)
C18—C2—C3—C21−115.00 (16)N1—C5—C12—C13−25.14 (19)
C1—C2—C3—C21119.81 (16)C4—C5—C12—C1397.57 (16)
C18—C2—C3—C464.47 (15)N1—C5—C12—C17157.44 (13)
C1—C2—C3—C4−60.72 (15)C4—C5—C12—C17−79.85 (16)
C21—C3—C4—C20116.21 (16)C17—C12—C13—C140.8 (2)
C2—C3—C4—C20−63.25 (14)C5—C12—C13—C14−176.61 (14)
C21—C3—C4—C5−118.71 (15)C12—C13—C14—C15−0.6 (3)
C2—C3—C4—C561.83 (14)C13—C14—C15—C160.0 (3)
C1—N1—C5—C12−177.87 (11)C14—C15—C16—C170.4 (3)
C1—N1—C5—C458.42 (15)C15—C16—C17—C12−0.1 (3)
C3—C4—C5—N1−58.56 (14)C13—C12—C17—C16−0.5 (2)
C20—C4—C5—N162.36 (15)C5—C12—C17—C16177.05 (15)
C3—C4—C5—C12177.47 (10)C3—C2—C18—C19−55.28 (16)
C20—C4—C5—C12−61.61 (14)C1—C2—C18—C1965.64 (16)
N1—C1—C6—C725.8 (2)C2—C18—C19—C2046.74 (17)
C2—C1—C6—C7−97.05 (17)C18—C19—C20—C4−45.54 (17)
N1—C1—C6—C11−157.20 (13)C3—C4—C20—C1952.91 (15)
C2—C1—C6—C1179.97 (16)C5—C4—C20—C19−67.39 (16)
C11—C6—C7—C8−0.5 (2)C4—C3—C21—C22−0.6 (2)
C1—C6—C7—C8176.55 (14)C2—C3—C21—C22178.80 (14)
  10 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Designer magnets containing cyanides and nitriles.

Authors:  J S Miller; J L Manson
Journal:  Acc Chem Res       Date:  2001-07       Impact factor: 22.384

3.  2,4-Bis(3-fluoro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; K Thirumurugan; V Ramkumar; S Pazhamalai; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

4.  2,4-Bis(2-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Kwon Taek Lim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26

5.  2,4-Bis(2-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Se Mo Son; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-20

6.  2,4-Bis(3-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Kwon Taek Lim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-13

7.  Unsaturated nitriles: conjugate additions of carbon nucleophiles to a recalcitrant class of acceptors.

Authors:  Fraser F Fleming; Qunzhao Wang
Journal:  Chem Rev       Date:  2003-05       Impact factor: 60.622

8.  2,4-Bis(4-fluoro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; H D Santan; Jong Tae Kim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

9.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  10 in total

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