Literature DB >> 21582262

2,4-Bis(4-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

P Parthiban, V Ramkumar, Min Sung Kim, S Kabilan, Yeon Tae Jeong.   

Abstract

In the mol-ecular structure of the title compound, C(20)H(19)Cl(2)NO, the mol-ecule exists in a twin-chair conformation with equatorial dispositions of the 4-chloro-phenyl groups on both sides of the secondary amino group; the dihedral angle between the aromatic ring planes is 31.33 (3)°. The crystal structure is stabilized by N-H⋯O inter-actions, leading to chains of molecules.

Entities:  

Year:  2009        PMID: 21582262      PMCID: PMC2968690          DOI: 10.1107/S160053680900590X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of diterpenoid/norditerpenoid alkaloids, see: Hardick et al. (1996 ▶); Jeyaraman et al. (1981 ▶). For similiar structures, see: Parthiban et al. (2008a ▶,b ▶,c ▶,d ▶,e ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C20H19Cl2NO M = 360.26 Monoclinic, a = 16.2589 (4) Å b = 6.8983 (2) Å c = 18.1291 (5) Å β = 116.149 (1)° V = 1825.23 (9) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 298 K 0.42 × 0.38 × 0.25 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.863, T max = 0.915 15050 measured reflections 4997 independent reflections 3241 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.135 S = 1.02 4997 reflections 221 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.42 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680900590X/bq2124sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680900590X/bq2124Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H19Cl2NOF(000) = 752
Mr = 360.26Dx = 1.311 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4308 reflections
a = 16.2589 (4) Åθ = 2.8–26.3°
b = 6.8983 (2) ŵ = 0.36 mm1
c = 18.1291 (5) ÅT = 298 K
β = 116.149 (1)°Rectangular, colourless
V = 1825.23 (9) Å30.42 × 0.38 × 0.25 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer4997 independent reflections
Radiation source: fine-focus sealed tube3241 reflections with I > 2σ(I)
graphiteRint = 0.021
φ and ω scansθmax = 29.8°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 1999)h = −21→20
Tmin = 0.863, Tmax = 0.915k = −9→9
15050 measured reflectionsl = −15→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0602P)2 + 0.4485P] where P = (Fo2 + 2Fc2)/3
4997 reflections(Δ/σ)max < 0.001
221 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.42 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.33305 (11)0.1260 (2)0.01759 (10)0.0384 (3)
H10.39070.10190.06650.046*
C20.29289 (11)−0.0738 (2)−0.02171 (10)0.0410 (4)
H20.3380−0.1414−0.03450.049*
C30.20110 (12)−0.0678 (3)−0.09929 (11)0.0533 (4)
H3A0.20790.0135−0.13990.064*
H3B0.1864−0.1977−0.12190.064*
C40.12129 (12)0.0082 (3)−0.08496 (12)0.0581 (5)
H4A0.12680.1478−0.07790.070*
H4B0.0643−0.0190−0.13300.070*
C50.11811 (12)−0.0827 (3)−0.00979 (12)0.0534 (5)
H5A0.0944−0.2136−0.02350.064*
H5B0.0756−0.00960.00370.064*
C60.21147 (11)−0.0905 (2)0.06658 (11)0.0418 (4)
H60.2052−0.16880.10900.050*
C70.25223 (11)0.1109 (2)0.10384 (10)0.0375 (3)
H70.31060.08930.15240.045*
C80.27891 (11)−0.1870 (2)0.04285 (10)0.0390 (4)
C90.35398 (11)0.2533 (2)−0.03978 (10)0.0414 (4)
C100.29057 (13)0.3777 (3)−0.09592 (12)0.0544 (5)
H100.23160.3836−0.10000.065*
C110.31400 (15)0.4943 (3)−0.14645 (12)0.0615 (5)
H110.27100.5776−0.18410.074*
C120.40091 (16)0.4852 (3)−0.14022 (12)0.0584 (5)
C130.46439 (15)0.3618 (3)−0.08633 (14)0.0654 (6)
H130.52280.3545−0.08350.078*
C140.44093 (13)0.2474 (3)−0.03588 (13)0.0555 (5)
H140.48450.16460.00150.067*
C150.18866 (11)0.2164 (2)0.13081 (10)0.0385 (3)
C160.17785 (12)0.1464 (3)0.19803 (11)0.0473 (4)
H160.21250.04070.22710.057*
C170.11692 (13)0.2301 (3)0.22247 (11)0.0528 (4)
H170.10970.18040.26700.063*
C180.06701 (12)0.3877 (3)0.18023 (12)0.0509 (4)
C190.07748 (13)0.4646 (3)0.11480 (12)0.0540 (5)
H190.04460.57400.08770.065*
C200.13769 (12)0.3765 (2)0.08997 (11)0.0471 (4)
H200.14400.42590.04500.057*
Cl1−0.01108 (4)0.49239 (10)0.21027 (4)0.0838 (2)
Cl20.43337 (5)0.64178 (11)−0.19813 (4)0.0956 (3)
N10.27045 (9)0.2229 (2)0.04419 (9)0.0401 (3)
O10.31840 (9)−0.33704 (16)0.07301 (8)0.0515 (3)
H1A0.2917 (13)0.334 (3)0.0645 (12)0.058 (6)*
U11U22U33U12U13U23
C10.0379 (8)0.0331 (8)0.0479 (9)−0.0024 (6)0.0223 (7)0.0015 (7)
C20.0440 (9)0.0329 (8)0.0532 (9)−0.0007 (7)0.0278 (8)−0.0020 (7)
C30.0591 (11)0.0489 (10)0.0498 (10)−0.0103 (9)0.0221 (9)−0.0051 (8)
C40.0413 (10)0.0552 (12)0.0634 (12)−0.0046 (8)0.0100 (9)−0.0021 (10)
C50.0407 (9)0.0473 (10)0.0750 (13)−0.0100 (8)0.0279 (9)−0.0112 (9)
C60.0462 (9)0.0304 (8)0.0578 (10)−0.0030 (7)0.0312 (8)0.0018 (7)
C70.0387 (8)0.0317 (7)0.0458 (9)0.0003 (6)0.0218 (7)0.0016 (7)
C80.0401 (8)0.0273 (7)0.0514 (9)−0.0059 (6)0.0219 (7)−0.0053 (7)
C90.0470 (9)0.0327 (8)0.0530 (9)−0.0049 (7)0.0298 (8)−0.0023 (7)
C100.0526 (11)0.0557 (11)0.0635 (11)0.0042 (9)0.0334 (9)0.0110 (9)
C110.0770 (14)0.0560 (12)0.0556 (11)0.0002 (10)0.0331 (11)0.0112 (9)
C120.0821 (14)0.0544 (11)0.0527 (10)−0.0244 (10)0.0424 (10)−0.0081 (9)
C130.0637 (13)0.0668 (13)0.0862 (15)−0.0121 (11)0.0517 (12)0.0008 (12)
C140.0514 (11)0.0483 (10)0.0781 (13)−0.0017 (8)0.0387 (10)0.0053 (9)
C150.0397 (8)0.0334 (8)0.0445 (8)−0.0023 (6)0.0205 (7)−0.0035 (7)
C160.0531 (10)0.0452 (10)0.0471 (9)0.0052 (8)0.0254 (8)0.0035 (8)
C170.0584 (11)0.0601 (12)0.0475 (10)−0.0022 (9)0.0305 (9)−0.0062 (9)
C180.0442 (10)0.0534 (11)0.0576 (11)−0.0012 (8)0.0249 (9)−0.0186 (9)
C190.0515 (11)0.0435 (10)0.0654 (12)0.0096 (8)0.0243 (9)−0.0027 (9)
C200.0534 (10)0.0394 (9)0.0528 (10)0.0025 (8)0.0274 (8)0.0022 (8)
Cl10.0721 (4)0.0962 (5)0.0986 (5)0.0135 (3)0.0519 (3)−0.0262 (4)
Cl20.1246 (6)0.1079 (5)0.0667 (4)−0.0502 (4)0.0535 (4)0.0061 (3)
N10.0490 (8)0.0274 (6)0.0524 (8)−0.0046 (6)0.0302 (7)−0.0020 (6)
O10.0613 (8)0.0313 (6)0.0686 (8)0.0042 (5)0.0347 (7)0.0037 (6)
C1—N11.466 (2)C9—C101.382 (3)
C1—C91.511 (2)C9—C141.385 (2)
C1—C21.557 (2)C10—C111.393 (3)
C1—H10.9800C10—H100.9300
C2—C81.505 (2)C11—C121.368 (3)
C2—C31.535 (2)C11—H110.9300
C2—H20.9800C12—C131.363 (3)
C3—C41.524 (3)C12—Cl21.7422 (18)
C3—H3A0.9700C13—C141.383 (3)
C3—H3B0.9700C13—H130.9300
C4—C51.522 (3)C14—H140.9300
C4—H4A0.9700C15—C201.383 (2)
C4—H4B0.9700C15—C161.392 (2)
C5—C61.540 (3)C16—C171.378 (2)
C5—H5A0.9700C16—H160.9300
C5—H5B0.9700C17—C181.371 (3)
C6—C81.499 (2)C17—H170.9300
C6—C71.559 (2)C18—C191.377 (3)
C6—H60.9800C18—Cl11.7433 (17)
C7—N11.462 (2)C19—C201.385 (2)
C7—C151.511 (2)C19—H190.9300
C7—H70.9800C20—H200.9300
C8—O11.2137 (19)N1—H1A0.85 (2)
N1—C1—C9111.16 (13)O1—C8—C6123.91 (15)
N1—C1—C2110.05 (12)O1—C8—C2124.16 (15)
C9—C1—C2112.08 (13)C6—C8—C2111.92 (13)
N1—C1—H1107.8C10—C9—C14118.01 (16)
C9—C1—H1107.8C10—C9—C1123.14 (15)
C2—C1—H1107.8C14—C9—C1118.85 (16)
C8—C2—C3107.89 (13)C9—C10—C11120.76 (18)
C8—C2—C1106.25 (13)C9—C10—H10119.6
C3—C2—C1115.97 (14)C11—C10—H10119.6
C8—C2—H2108.8C12—C11—C10119.42 (19)
C3—C2—H2108.8C12—C11—H11120.3
C1—C2—H2108.8C10—C11—H11120.3
C4—C3—C2114.21 (15)C13—C12—C11121.07 (17)
C4—C3—H3A108.7C13—C12—Cl2118.99 (16)
C2—C3—H3A108.7C11—C12—Cl2119.86 (18)
C4—C3—H3B108.7C12—C13—C14119.24 (19)
C2—C3—H3B108.7C12—C13—H13120.4
H3A—C3—H3B107.6C14—C13—H13120.4
C5—C4—C3112.21 (16)C13—C14—C9121.49 (19)
C5—C4—H4A109.2C13—C14—H14119.3
C3—C4—H4A109.2C9—C14—H14119.3
C5—C4—H4B109.2C20—C15—C16117.94 (15)
C3—C4—H4B109.2C20—C15—C7123.06 (14)
H4A—C4—H4B107.9C16—C15—C7118.96 (14)
C4—C5—C6114.24 (14)C17—C16—C15121.48 (17)
C4—C5—H5A108.7C17—C16—H16119.3
C6—C5—H5A108.7C15—C16—H16119.3
C4—C5—H5B108.7C18—C17—C16119.03 (17)
C6—C5—H5B108.7C18—C17—H17120.5
H5A—C5—H5B107.6C16—C17—H17120.5
C8—C6—C5108.27 (14)C17—C18—C19121.29 (16)
C8—C6—C7107.15 (12)C17—C18—Cl1119.16 (15)
C5—C6—C7114.88 (14)C19—C18—Cl1119.55 (15)
C8—C6—H6108.8C18—C19—C20118.97 (17)
C5—C6—H6108.8C18—C19—H19120.5
C7—C6—H6108.8C20—C19—H19120.5
N1—C7—C15112.03 (12)C15—C20—C19121.25 (17)
N1—C7—C6109.68 (13)C15—C20—H20119.4
C15—C7—C6110.42 (12)C19—C20—H20119.4
N1—C7—H7108.2C7—N1—C1113.48 (12)
C15—C7—H7108.2C7—N1—H1A109.2 (14)
C6—C7—H7108.2C1—N1—H1A110.1 (13)
N1—C1—C2—C8−57.87 (16)C1—C9—C10—C11178.93 (17)
C9—C1—C2—C8177.89 (13)C9—C10—C11—C120.0 (3)
N1—C1—C2—C361.99 (18)C10—C11—C12—C131.1 (3)
C9—C1—C2—C3−62.25 (18)C10—C11—C12—Cl2−175.72 (16)
C8—C2—C3—C453.9 (2)C11—C12—C13—C14−1.5 (3)
C1—C2—C3—C4−65.1 (2)Cl2—C12—C13—C14175.27 (16)
C2—C3—C4—C5−46.3 (2)C12—C13—C14—C91.0 (3)
C3—C4—C5—C645.7 (2)C10—C9—C14—C130.0 (3)
C4—C5—C6—C8−53.0 (2)C1—C9—C14—C13−179.45 (18)
C4—C5—C6—C766.6 (2)N1—C7—C15—C2014.1 (2)
C8—C6—C7—N157.05 (17)C6—C7—C15—C20−108.49 (17)
C5—C6—C7—N1−63.26 (17)N1—C7—C15—C16−168.34 (15)
C8—C6—C7—C15−179.02 (13)C6—C7—C15—C1669.09 (19)
C5—C6—C7—C1560.67 (18)C20—C15—C16—C171.5 (3)
C5—C6—C8—O1−118.50 (18)C7—C15—C16—C17−176.24 (16)
C7—C6—C8—O1117.07 (17)C15—C16—C17—C18−1.0 (3)
C5—C6—C8—C262.45 (17)C16—C17—C18—C19−0.8 (3)
C7—C6—C8—C2−61.98 (17)C16—C17—C18—Cl1179.30 (14)
C3—C2—C8—O1118.08 (18)C17—C18—C19—C202.0 (3)
C1—C2—C8—O1−116.94 (17)Cl1—C18—C19—C20−178.05 (14)
C3—C2—C8—C6−62.87 (17)C16—C15—C20—C19−0.2 (3)
C1—C2—C8—C662.11 (17)C7—C15—C20—C19177.44 (16)
N1—C1—C9—C10−35.0 (2)C18—C19—C20—C15−1.5 (3)
C2—C1—C9—C1088.57 (19)C15—C7—N1—C1179.14 (13)
N1—C1—C9—C14144.36 (16)C6—C7—N1—C1−57.87 (17)
C2—C1—C9—C14−92.02 (19)C9—C1—N1—C7−176.47 (13)
C14—C9—C10—C11−0.5 (3)C2—C1—N1—C758.76 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.85 (2)2.31 (2)3.1202 (18)160.2 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.85 (2)2.31 (2)3.1202 (18)160.2 (18)

Symmetry code: (i) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Nudicauline and elatine as potent norditerpenoid ligands at rat neuronal alpha-bungarotoxin binding sites: importance of the 2-(methylsuccinimido)benzoyl moiety for neuronal nicotinic acetylcholine receptor binding.

Authors:  D J Hardick; I S Blagbrough; G Cooper; B V Potter; T Critchley; S Wonnacott
Journal:  J Med Chem       Date:  1996-11-22       Impact factor: 7.446

3.  2,4-Bis(3-fluoro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; K Thirumurugan; V Ramkumar; S Pazhamalai; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

4.  2,4-Bis(2-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Kwon Taek Lim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26

5.  2,4-Bis(2-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Se Mo Son; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-20

6.  2,4-Bis(3-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Kwon Taek Lim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-13

7.  2,4-Bis(4-fluoro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; H D Santan; Jong Tae Kim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06
  7 in total
  3 in total

1.  2,4-Bis(4-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; S Amirthaganesan; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20

2.  2,4-Bis(2-fluoro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-17

3.  2,4-Bis(4-chloro-phen-yl)-1-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-06
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.