Literature DB >> 21578830

1-Methyl-2,4-bis-(2-methoxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

P Parthiban, V Ramkumar, Yeon Tae Jeong.   

Abstract

The crystal structure of the title compound, C(23)H(27)NO(3), shows that the compound exists in a chair-chair conformation with an equatorial disposition of 2-methoxy-phenyl groups at an angle of 39.94 (3)° with respect to each other. An inter-molecular N-H⋯π inter-action is observed in the crystal packing.

Entities:  

Year:  2009        PMID: 21578830      PMCID: PMC2972093          DOI: 10.1107/S1600536809047928

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 3-aza­bicyclo­nona­nes, see: Barker et al. (2005 ▶); Hardick et al. (1996 ▶); Jeyaraman & Avila (1981 ▶). For related structures with similar conformations, see: Parthiban et al. (2008 ▶); Parthiban, Ramkumar & Jeong (2009 ▶); Parthiban, Ramkumar, Kim et al. (2009 ▶). For a related structure with a chair–boat conformation, see: Smith-Verdier et al. (1983 ▶). For a related structure with a boatboat conformation, see: Padegimas & Kovacic (1972 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶); Nardelli (1983 ▶).

Experimental

Crystal data

C23H27NO3 M = 365.46 Monoclinic, a = 7.9569 (3) Å b = 20.8291 (9) Å c = 11.6708 (6) Å β = 96.297 (2)° V = 1922.59 (15) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.41 × 0.24 × 0.20 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.288, T max = 0.980 14049 measured reflections 4608 independent reflections 3166 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.127 S = 1.02 4608 reflections 251 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809047928/ez2190sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809047928/ez2190Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H27NO3F(000) = 784
Mr = 365.46Dx = 1.263 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4178 reflections
a = 7.9569 (3) Åθ = 2.6–28.0°
b = 20.8291 (9) ŵ = 0.08 mm1
c = 11.6708 (6) ÅT = 298 K
β = 96.297 (2)°Block, colourless
V = 1922.59 (15) Å30.41 × 0.24 × 0.20 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer4608 independent reflections
Radiation source: fine-focus sealed tube3166 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 28.3°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 1999)h = −8→10
Tmin = 0.288, Tmax = 0.980k = −27→27
14049 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0542P)2 + 0.4061P] where P = (Fo2 + 2Fc2)/3
4608 reflections(Δ/σ)max < 0.001
251 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.23693 (17)0.12454 (6)0.28186 (12)0.0323 (3)
H10.16690.12690.34580.039*
C20.11755 (18)0.10977 (7)0.16904 (12)0.0363 (3)
C30.2099 (2)0.10169 (8)0.06003 (13)0.0431 (4)
H3A0.12540.0972−0.00600.052*
H3B0.27250.14080.04920.052*
C40.3315 (2)0.04531 (8)0.06032 (14)0.0473 (4)
H4A0.43470.05570.10890.057*
H4B0.36040.0385−0.01740.057*
C50.2575 (2)−0.01655 (8)0.10382 (14)0.0465 (4)
H5A0.3483−0.04730.12110.056*
H5B0.1790−0.03450.04270.056*
C60.16498 (18)−0.00768 (7)0.21184 (13)0.0372 (3)
H60.1050−0.04750.22560.045*
C70.27979 (17)0.01007 (6)0.32297 (12)0.0321 (3)
H70.20890.01400.38620.039*
C80.03777 (19)0.04528 (7)0.19078 (12)0.0383 (3)
C90.33357 (18)0.18729 (6)0.27865 (12)0.0334 (3)
C100.49093 (19)0.18943 (7)0.23764 (14)0.0407 (4)
H100.53440.15220.20820.049*
C110.5850 (2)0.24549 (8)0.23944 (15)0.0479 (4)
H110.69030.24570.21190.058*
C120.5214 (2)0.30076 (8)0.28224 (16)0.0505 (4)
H120.58390.33850.28360.061*
C130.3655 (2)0.30062 (7)0.32316 (14)0.0452 (4)
H130.32300.33830.35160.054*
C140.27187 (19)0.24449 (7)0.32211 (12)0.0370 (3)
C15−0.0179 (2)0.16144 (8)0.14796 (16)0.0530 (4)
H15A−0.09810.14900.08430.079*
H15B0.03400.20140.13050.079*
H15C−0.07480.16650.21580.079*
C160.41183 (18)−0.04090 (6)0.35486 (12)0.0325 (3)
C170.36550 (18)−0.09743 (7)0.40848 (12)0.0355 (3)
C180.4828 (2)−0.14549 (7)0.43706 (13)0.0432 (4)
H180.4506−0.18310.47170.052*
C190.6482 (2)−0.13728 (8)0.41378 (14)0.0487 (4)
H190.7271−0.16950.43300.058*
C200.6970 (2)−0.08216 (8)0.36268 (15)0.0497 (4)
H200.8087−0.07670.34810.060*
C210.57849 (19)−0.03438 (7)0.33286 (14)0.0421 (4)
H210.61180.00280.29740.050*
C220.0402 (2)0.29848 (8)0.39536 (17)0.0566 (5)
H22A0.10560.31740.46080.085*
H22B−0.07170.28940.41430.085*
H22C0.03390.32780.33160.085*
C230.1527 (3)−0.15186 (11)0.49954 (19)0.0793 (7)
H23A0.1658−0.19200.46100.119*
H23B0.0368−0.14660.51340.119*
H23C0.2235−0.15150.57170.119*
N10.35903 (15)0.07229 (5)0.30669 (11)0.0324 (3)
O1−0.11245 (14)0.03744 (6)0.19326 (12)0.0606 (4)
O20.11835 (14)0.24067 (5)0.36491 (10)0.0498 (3)
O30.19994 (13)−0.10095 (5)0.42960 (10)0.0484 (3)
H1A0.4203 (18)0.0824 (7)0.3696 (13)0.032 (4)*
U11U22U33U12U13U23
C10.0345 (7)0.0274 (7)0.0357 (7)0.0025 (5)0.0074 (6)0.0021 (6)
C20.0341 (8)0.0356 (8)0.0387 (8)0.0037 (6)0.0025 (6)0.0037 (6)
C30.0492 (9)0.0446 (9)0.0360 (8)−0.0024 (7)0.0065 (7)0.0062 (7)
C40.0524 (10)0.0531 (10)0.0386 (8)0.0012 (8)0.0149 (7)−0.0044 (7)
C50.0556 (10)0.0417 (9)0.0415 (9)0.0027 (7)0.0019 (7)−0.0094 (7)
C60.0371 (8)0.0303 (7)0.0437 (8)−0.0074 (6)0.0027 (6)−0.0005 (6)
C70.0336 (7)0.0281 (7)0.0356 (7)−0.0004 (6)0.0079 (6)0.0008 (6)
C80.0346 (8)0.0454 (9)0.0344 (7)−0.0040 (7)0.0021 (6)0.0012 (6)
C90.0375 (8)0.0278 (7)0.0352 (7)0.0011 (6)0.0047 (6)0.0033 (6)
C100.0406 (8)0.0338 (8)0.0490 (9)0.0025 (6)0.0104 (7)0.0025 (7)
C110.0397 (9)0.0431 (9)0.0625 (11)−0.0038 (7)0.0124 (8)0.0071 (8)
C120.0538 (10)0.0348 (9)0.0637 (11)−0.0107 (7)0.0096 (8)0.0045 (8)
C130.0571 (10)0.0285 (8)0.0511 (9)0.0001 (7)0.0099 (8)−0.0009 (7)
C140.0426 (8)0.0314 (7)0.0379 (8)0.0021 (6)0.0085 (6)0.0037 (6)
C150.0466 (10)0.0492 (10)0.0613 (11)0.0119 (8)−0.0018 (8)0.0049 (8)
C160.0365 (8)0.0272 (7)0.0340 (7)0.0002 (6)0.0053 (6)−0.0024 (6)
C170.0404 (8)0.0320 (7)0.0337 (7)−0.0031 (6)0.0025 (6)−0.0014 (6)
C180.0578 (10)0.0298 (7)0.0408 (8)0.0021 (7)0.0006 (7)0.0024 (6)
C190.0536 (10)0.0414 (9)0.0498 (9)0.0186 (8)−0.0003 (8)−0.0031 (7)
C200.0395 (9)0.0502 (10)0.0608 (10)0.0094 (7)0.0116 (8)−0.0031 (8)
C210.0401 (8)0.0365 (8)0.0510 (9)0.0002 (7)0.0117 (7)0.0023 (7)
C220.0599 (11)0.0430 (10)0.0702 (12)0.0106 (8)0.0220 (9)−0.0069 (8)
C230.0611 (13)0.0974 (16)0.0793 (14)−0.0177 (11)0.0073 (11)0.0504 (13)
N10.0324 (6)0.0256 (6)0.0383 (7)−0.0002 (5)−0.0004 (5)−0.0006 (5)
O10.0336 (6)0.0681 (8)0.0795 (9)−0.0079 (6)0.0039 (6)0.0119 (7)
O20.0552 (7)0.0316 (6)0.0678 (8)0.0036 (5)0.0292 (6)−0.0024 (5)
O30.0429 (6)0.0469 (7)0.0564 (7)−0.0067 (5)0.0093 (5)0.0167 (5)
C1—N11.4663 (17)C12—C131.377 (2)
C1—C91.5191 (19)C12—H120.9300
C1—C21.5672 (19)C13—C141.386 (2)
C1—H10.9800C13—H130.9300
C2—C81.519 (2)C14—O21.3719 (17)
C2—C151.524 (2)C15—H15A0.9600
C2—C31.547 (2)C15—H15B0.9600
C3—C41.521 (2)C15—H15C0.9600
C3—H3A0.9700C16—C211.385 (2)
C3—H3B0.9700C16—C171.4016 (19)
C4—C51.526 (2)C17—O31.3685 (17)
C4—H4A0.9700C17—C181.384 (2)
C4—H4B0.9700C18—C191.384 (2)
C5—C61.539 (2)C18—H180.9300
C5—H5A0.9700C19—C201.369 (2)
C5—H5B0.9700C19—H190.9300
C6—C81.499 (2)C20—C211.389 (2)
C6—C71.547 (2)C20—H200.9300
C6—H60.9800C21—H210.9300
C7—N11.4628 (17)C22—O21.4181 (18)
C7—C161.5111 (19)C22—H22A0.9600
C7—H70.9800C22—H22B0.9600
C8—O11.2099 (18)C22—H22C0.9600
C9—C101.389 (2)C23—O31.414 (2)
C9—C141.4044 (19)C23—H23A0.9600
C10—C111.386 (2)C23—H23B0.9600
C10—H100.9300C23—H23C0.9600
C11—C121.373 (2)N1—H1A0.862 (15)
C11—H110.9300
N1—C1—C9108.50 (11)C12—C11—H11120.3
N1—C1—C2110.35 (11)C10—C11—H11120.3
C9—C1—C2114.20 (11)C11—C12—C13120.41 (15)
N1—C1—H1107.9C11—C12—H12119.8
C9—C1—H1107.9C13—C12—H12119.8
C2—C1—H1107.9C12—C13—C14120.17 (15)
C8—C2—C15110.51 (13)C12—C13—H13119.9
C8—C2—C3106.63 (12)C14—C13—H13119.9
C15—C2—C3109.61 (13)O2—C14—C13123.04 (13)
C8—C2—C1105.02 (11)O2—C14—C9116.28 (12)
C15—C2—C1110.47 (12)C13—C14—C9120.67 (14)
C3—C2—C1114.42 (12)C2—C15—H15A109.5
C4—C3—C2116.20 (12)C2—C15—H15B109.5
C4—C3—H3A108.2H15A—C15—H15B109.5
C2—C3—H3A108.2C2—C15—H15C109.5
C4—C3—H3B108.2H15A—C15—H15C109.5
C2—C3—H3B108.2H15B—C15—H15C109.5
H3A—C3—H3B107.4C21—C16—C17117.99 (13)
C3—C4—C5112.60 (14)C21—C16—C7122.65 (12)
C3—C4—H4A109.1C17—C16—C7119.37 (13)
C5—C4—H4A109.1O3—C17—C18123.70 (13)
C3—C4—H4B109.1O3—C17—C16115.52 (12)
C5—C4—H4B109.1C18—C17—C16120.78 (14)
H4A—C4—H4B107.8C19—C18—C17119.62 (14)
C4—C5—C6114.05 (12)C19—C18—H18120.2
C4—C5—H5A108.7C17—C18—H18120.2
C6—C5—H5A108.7C20—C19—C18120.67 (14)
C4—C5—H5B108.7C20—C19—H19119.7
C6—C5—H5B108.7C18—C19—H19119.7
H5A—C5—H5B107.6C19—C20—C21119.53 (16)
C8—C6—C5109.21 (12)C19—C20—H20120.2
C8—C6—C7106.72 (11)C21—C20—H20120.2
C5—C6—C7115.07 (12)C16—C21—C20121.40 (14)
C8—C6—H6108.6C16—C21—H21119.3
C5—C6—H6108.6C20—C21—H21119.3
C7—C6—H6108.6O2—C22—H22A109.5
N1—C7—C16110.89 (11)O2—C22—H22B109.5
N1—C7—C6109.03 (11)H22A—C22—H22B109.5
C16—C7—C6111.68 (11)O2—C22—H22C109.5
N1—C7—H7108.4H22A—C22—H22C109.5
C16—C7—H7108.4H22B—C22—H22C109.5
C6—C7—H7108.4O3—C23—H23A109.5
O1—C8—C6123.22 (14)O3—C23—H23B109.5
O1—C8—C2123.74 (14)H23A—C23—H23B109.5
C6—C8—C2113.02 (12)O3—C23—H23C109.5
C10—C9—C14117.47 (13)H23A—C23—H23C109.5
C10—C9—C1120.91 (12)H23B—C23—H23C109.5
C14—C9—C1121.54 (13)C7—N1—C1113.43 (11)
C11—C10—C9121.82 (14)C7—N1—H1A108.5 (10)
C11—C10—H10119.1C1—N1—H1A106.7 (10)
C9—C10—H10119.1C14—O2—C22118.30 (12)
C12—C11—C10119.47 (15)C17—O3—C23117.79 (13)
N1—C1—C2—C856.53 (14)C9—C10—C11—C12−0.4 (3)
C9—C1—C2—C8179.06 (12)C10—C11—C12—C130.0 (3)
N1—C1—C2—C15175.70 (12)C11—C12—C13—C140.4 (3)
C9—C1—C2—C15−61.77 (16)C12—C13—C14—O2177.88 (14)
N1—C1—C2—C3−60.04 (15)C12—C13—C14—C9−0.5 (2)
C9—C1—C2—C362.49 (16)C10—C9—C14—O2−178.29 (13)
C8—C2—C3—C4−51.75 (17)C1—C9—C14—O2−1.4 (2)
C15—C2—C3—C4−171.39 (14)C10—C9—C14—C130.2 (2)
C1—C2—C3—C463.89 (17)C1—C9—C14—C13177.06 (13)
C2—C3—C4—C544.90 (19)N1—C7—C16—C21−20.15 (19)
C3—C4—C5—C6−43.79 (19)C6—C7—C16—C21101.66 (15)
C4—C5—C6—C851.92 (17)N1—C7—C16—C17160.12 (12)
C4—C5—C6—C7−68.05 (17)C6—C7—C16—C17−78.06 (16)
C8—C6—C7—N1−58.41 (14)C21—C16—C17—O3179.13 (12)
C5—C6—C7—N162.92 (15)C7—C16—C17—O3−1.14 (19)
C8—C6—C7—C16178.70 (11)C21—C16—C17—C18−0.8 (2)
C5—C6—C7—C16−59.97 (16)C7—C16—C17—C18178.93 (13)
C5—C6—C8—O1119.23 (16)O3—C17—C18—C19−179.09 (14)
C7—C6—C8—O1−115.79 (16)C16—C17—C18—C190.8 (2)
C5—C6—C8—C2−62.18 (15)C17—C18—C19—C20−0.1 (2)
C7—C6—C8—C262.80 (15)C18—C19—C20—C21−0.7 (3)
C15—C2—C8—O1−1.6 (2)C17—C16—C21—C200.0 (2)
C3—C2—C8—O1−120.63 (16)C7—C16—C21—C20−179.71 (14)
C1—C2—C8—O1117.57 (16)C19—C20—C21—C160.7 (3)
C15—C2—C8—C6179.84 (13)C16—C7—N1—C1−176.79 (11)
C3—C2—C8—C660.79 (15)C6—C7—N1—C159.86 (15)
C1—C2—C8—C6−61.01 (15)C9—C1—N1—C7174.42 (11)
N1—C1—C9—C1034.09 (17)C2—C1—N1—C7−59.77 (15)
C2—C1—C9—C10−89.44 (16)C13—C14—O2—C229.9 (2)
N1—C1—C9—C14−142.65 (13)C9—C14—O2—C22−171.66 (14)
C2—C1—C9—C1493.82 (16)C18—C17—O3—C239.8 (2)
C14—C9—C10—C110.2 (2)C16—C17—O3—C23−170.10 (16)
C1—C9—C10—C11−176.64 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cg1i0.862 (15)2.852 (3)3.6276 (14)150.6 (12)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1ACg1i 0.862 (15)2.852 (3)3.6276 (14)150.6 (12)

Symmetry code: (i) . Cg1 is the centroid of the C16–C21 ring.

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Methyllycaconitine analogues have mixed antagonist effects at nicotinic acetylcholine receptors.

Authors:  David Barker; Diana H-S Lin; Jane E Carland; Cindy P-Y Chu; Mary Chebib; Margaret A Brimble; G Paul Savage; Malcolm D McLeod
Journal:  Bioorg Med Chem       Date:  2005-07-15       Impact factor: 3.641

3.  Nudicauline and elatine as potent norditerpenoid ligands at rat neuronal alpha-bungarotoxin binding sites: importance of the 2-(methylsuccinimido)benzoyl moiety for neuronal nicotinic acetylcholine receptor binding.

Authors:  D J Hardick; I S Blagbrough; G Cooper; B V Potter; T Critchley; S Wonnacott
Journal:  J Med Chem       Date:  1996-11-22       Impact factor: 7.446

4.  2,4-Bis(2-methoxy-phenyl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Se Mo Son; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-23

5.  2,4-Bis(2-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Se Mo Son; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-20

6.  2,4-Bis(2-fluoro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-17
  6 in total
  3 in total

1.  2,4-Bis(4-chloro-phen-yl)-1-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-06

2.  2,4-Bis(2-methyl-phen-yl)-3-aza-bicyclo[3.3.1]nonan-9-one O-methyl-oxime.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-30

3.  2,4-Bis(2-eth-oxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  Dong Ho Park; V Ramkumar; P Parthiban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-03
  3 in total

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