Literature DB >> 21581027

Butyl 2-(3-benzoyl-thio-ureido)acetate.

Ibrahim N Hassan1, Bohari M Yamin, Mohammad B Kassim.   

Abstract

In the title compound, C(14)H(18)N(2)O(3)S, the butyl acetate fragment and the benzoyl group adopt a cis-trans configuration, respectively, with respect to the thiono S atom across the C-N bonds. In the crystal packing, the mol-ecules are linked by inter-molecular N-H⋯O and C-H⋯O hydrogen bonds to form a one-dimensional chain along the c axis. The terminal butyl C atom is disordered with occupancies 0.82 (2)and 0.18 (2).

Entities:  

Year:  2008        PMID: 21581027      PMCID: PMC2959747          DOI: 10.1107/S1600536808033540

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For information on bond lengths, see: Allen et al. (1987 ▶); For related structures, see: Hassan et al. (2008a ▶,b ▶); Yamin & Hassan (2004 ▶); Yamin & Yusof (2003 ▶).

Experimental

Crystal data

C14H18N2O3S M = 294.36 Monoclinic, a = 14.051 (3) Å b = 7.9482 (18) Å c = 14.116 (3) Å β = 102.753 (3)° V = 1537.5 (6) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 298 (2) K 0.46 × 0.28 × 0.25 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.906, T max = 0.947 7933 measured reflections 2853 independent reflections 2098 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.136 S = 1.03 2853 reflections 187 parameters 6 restraints H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808033540/at2648sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808033540/at2648Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H18N2O3SF(000) = 624
Mr = 294.36Dx = 1.272 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2213 reflections
a = 14.051 (3) Åθ = 3.0–25.5°
b = 7.9482 (18) ŵ = 0.22 mm1
c = 14.116 (3) ÅT = 298 K
β = 102.753 (3)°Block, colourless
V = 1537.5 (6) Å30.46 × 0.28 × 0.25 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer2853 independent reflections
Radiation source: fine-focus sealed tube2098 reflections with I > 2σ(I)
graphiteRint = 0.022
ω scansθmax = 25.5°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −17→15
Tmin = 0.906, Tmax = 0.947k = −9→9
7933 measured reflectionsl = −17→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0696P)2 + 0.3732P] where P = (Fo2 + 2Fc2)/3
2853 reflections(Δ/σ)max < 0.001
187 parametersΔρmax = 0.24 e Å3
6 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C50.38240 (15)0.4009 (3)0.51713 (17)0.0528 (6)
H50.37850.40570.45060.063*
C40.31404 (17)0.4833 (3)0.55659 (18)0.0588 (6)
H40.26450.54450.51670.071*
C30.31902 (17)0.4750 (3)0.65504 (18)0.0606 (6)
H30.27300.53120.68160.073*
C20.39148 (17)0.3842 (3)0.71373 (17)0.0626 (7)
H20.39360.37680.77990.075*
C10.46139 (16)0.3037 (3)0.67530 (16)0.0545 (6)
H10.51140.24450.71580.065*
C60.45697 (14)0.3111 (3)0.57640 (15)0.0460 (5)
C70.52769 (15)0.2248 (3)0.52830 (15)0.0480 (5)
C80.69838 (15)0.1216 (3)0.55880 (15)0.0477 (5)
C90.75837 (16)−0.0258 (3)0.43410 (16)0.0563 (6)
H9A0.7547−0.14380.45030.068*
H9B0.82200.01550.46710.068*
C100.74863 (17)−0.0094 (3)0.32743 (17)0.0526 (5)
C110.82911 (19)−0.0919 (4)0.20303 (18)0.0751 (8)
H11A0.81970.02140.17710.090*
H11B0.7797−0.16410.16450.090*
C120.92815 (19)−0.1537 (4)0.1994 (2)0.0751 (8)
H12A0.9353−0.26860.22310.090*
H12B0.9765−0.08550.24240.090*
C130.9475 (2)−0.1483 (5)0.0995 (2)0.0897 (9)
H13A0.9217−0.24840.06370.108*
H13B0.9161−0.05070.06480.108*
C14'1.050 (2)−0.139 (7)0.108 (2)0.111 (3)0.18 (2)
H14E1.0727−0.02820.12880.166*0.18 (2)
H14F1.0652−0.16330.04660.166*0.18 (2)
H14D1.0819−0.21990.15540.166*0.18 (2)
C141.0392 (5)−0.2373 (17)0.0885 (5)0.111 (3)0.82 (2)
H14B1.0456−0.22860.02230.166*0.82 (2)
H14A1.0356−0.35370.10550.166*0.82 (2)
H14C1.0947−0.18620.13060.166*0.82 (2)
S10.80227 (5)0.10476 (11)0.64102 (5)0.0744 (3)
O10.50502 (11)0.1805 (2)0.44383 (11)0.0647 (5)
O20.68594 (12)0.0656 (2)0.27269 (13)0.0709 (5)
O30.82116 (12)−0.0935 (2)0.30338 (11)0.0648 (5)
N10.61986 (12)0.2016 (2)0.58446 (12)0.0492 (5)
H1A0.63020.24130.64250.059*
N20.68439 (13)0.0652 (2)0.46870 (13)0.0517 (5)
H2A0.62920.08350.42950.062*
U11U22U33U12U13U23
C50.0497 (12)0.0591 (14)0.0492 (13)−0.0022 (11)0.0100 (10)0.0037 (11)
C40.0504 (13)0.0584 (15)0.0658 (15)0.0052 (11)0.0090 (11)0.0063 (12)
C30.0552 (14)0.0631 (16)0.0670 (16)0.0002 (11)0.0209 (12)−0.0101 (12)
C20.0611 (15)0.0801 (18)0.0481 (13)−0.0007 (13)0.0154 (11)−0.0050 (12)
C10.0499 (12)0.0630 (15)0.0481 (13)0.0003 (11)0.0057 (10)0.0024 (11)
C60.0421 (11)0.0488 (12)0.0463 (12)−0.0056 (9)0.0077 (9)−0.0015 (10)
C70.0460 (12)0.0511 (13)0.0459 (12)−0.0034 (10)0.0076 (9)0.0015 (10)
C80.0470 (12)0.0481 (13)0.0495 (13)−0.0026 (10)0.0137 (10)0.0069 (10)
C90.0539 (13)0.0606 (15)0.0566 (14)0.0078 (11)0.0171 (11)0.0027 (11)
C100.0485 (12)0.0540 (14)0.0575 (14)−0.0006 (11)0.0162 (11)−0.0009 (11)
C110.0707 (17)0.101 (2)0.0565 (15)0.0157 (15)0.0201 (13)−0.0033 (14)
C120.0645 (16)0.092 (2)0.0718 (17)0.0078 (14)0.0222 (13)−0.0051 (15)
C130.087 (2)0.110 (2)0.0789 (19)0.0225 (18)0.0322 (16)0.0006 (17)
C14'0.104 (3)0.147 (7)0.093 (3)0.051 (4)0.048 (3)0.010 (4)
C140.104 (3)0.147 (7)0.093 (3)0.051 (4)0.048 (3)0.010 (4)
S10.0534 (4)0.1112 (6)0.0549 (4)0.0174 (4)0.0040 (3)−0.0017 (4)
O10.0538 (9)0.0881 (12)0.0482 (10)0.0065 (9)0.0030 (7)−0.0130 (9)
O20.0631 (11)0.0901 (13)0.0620 (11)0.0204 (10)0.0188 (9)0.0141 (9)
O30.0613 (10)0.0803 (12)0.0557 (10)0.0175 (9)0.0195 (8)−0.0007 (8)
N10.0449 (10)0.0609 (12)0.0418 (9)0.0013 (9)0.0096 (7)−0.0019 (8)
N20.0454 (10)0.0605 (12)0.0494 (11)0.0029 (9)0.0109 (8)−0.0034 (9)
C5—C41.377 (3)C10—O21.195 (3)
C5—C61.386 (3)C10—O31.324 (3)
C5—H50.9300C11—O31.445 (3)
C4—C31.378 (3)C11—C121.487 (4)
C4—H40.9300C11—H11A0.9700
C3—C21.368 (3)C11—H11B0.9700
C3—H30.9300C12—C131.494 (4)
C2—C11.380 (3)C12—H12A0.9700
C2—H20.9300C12—H12B0.9700
C1—C61.385 (3)C13—C14'1.42 (3)
C1—H10.9300C13—C141.507 (7)
C6—C71.489 (3)C13—H13A0.9700
C7—O11.216 (2)C13—H13B0.9700
C7—N11.373 (3)C14'—H14E0.9600
C8—N21.322 (3)C14'—H14F0.9600
C8—N11.389 (3)C14'—H14D0.9600
C8—S11.658 (2)C14—H14B0.9600
C9—N21.437 (3)C14—H14A0.9600
C9—C101.487 (3)C14—H14C0.9600
C9—H9A0.9700N1—H1A0.8600
C9—H9B0.9700N2—H2A0.8600
C4—C5—C6120.2 (2)O3—C11—H11B110.1
C4—C5—H5119.9C12—C11—H11B110.1
C6—C5—H5119.9H11A—C11—H11B108.5
C5—C4—C3120.0 (2)C11—C12—C13112.9 (2)
C5—C4—H4120.0C11—C12—H12A109.0
C3—C4—H4120.0C13—C12—H12A109.0
C2—C3—C4120.1 (2)C11—C12—H12B109.0
C2—C3—H3120.0C13—C12—H12B109.0
C4—C3—H3120.0H12A—C12—H12B107.8
C3—C2—C1120.4 (2)C14'—C13—C12108.2 (12)
C3—C2—H2119.8C14'—C13—C1432.8 (19)
C1—C2—H2119.8C12—C13—C14115.0 (3)
C2—C1—C6119.9 (2)C14'—C13—H13A110.1
C2—C1—H1120.0C12—C13—H13A110.1
C6—C1—H1120.0C14—C13—H13A77.9
C1—C6—C5119.4 (2)C14'—C13—H13B110.1
C1—C6—C7123.66 (19)C12—C13—H13B110.1
C5—C6—C7116.99 (19)C14—C13—H13B128.8
O1—C7—N1122.4 (2)H13A—C13—H13B108.4
O1—C7—C6121.58 (19)C13—C14'—H14E109.5
N1—C7—C6115.97 (18)C13—C14'—H14F109.5
N2—C8—N1116.64 (19)C13—C14'—H14D109.5
N2—C8—S1124.56 (17)C13—C14—H14B109.5
N1—C8—S1118.80 (16)C13—C14—H14A109.5
N2—C9—C10112.83 (19)H14B—C14—H14A109.5
N2—C9—H9A109.0C13—C14—H14C109.5
C10—C9—H9A109.0H14B—C14—H14C109.5
N2—C9—H9B109.0H14A—C14—H14C109.5
C10—C9—H9B109.0C10—O3—C11118.49 (19)
H9A—C9—H9B107.8C7—N1—C8127.81 (18)
O2—C10—O3125.8 (2)C7—N1—H1A116.1
O2—C10—C9126.0 (2)C8—N1—H1A116.1
O3—C10—C9108.1 (2)C8—N2—C9122.18 (19)
O3—C11—C12107.8 (2)C8—N2—H2A118.9
O3—C11—H11A110.1C9—N2—H2A118.9
C12—C11—H11A110.1
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.862.393.203 (2)158
N2—H2A···O10.861.962.631 (2)134
C2—H2···O1i0.932.533.328 (3)144
C9—H9B···S10.972.633.032 (2)105
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O2i0.862.393.203 (2)158
N2—H2A⋯O10.861.962.631 (2)134
C2—H2⋯O1i0.932.533.328 (3)144

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Propyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-09

3.  Ethyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-09
  3 in total
  9 in total

1.  Methyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14

2.  (E)-Methyl 2-(3-cinnamoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11

3.  (E)-Ethyl 2-(3-cinnamoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-09

4.  2-Bromo-N-(dibenzyl-carbamothioyl)benzamide.

Authors:  Mohd Faizal Md Nasir; Ibrahim N Hassan; Wan Ramli Wan Daud; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

5.  Cinnamoyl-thio-urea.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-13

6.  Methyl 3-(3-benzoyl-thio-ureido)propano-ate.

Authors:  Ibrahim N Hassan; Chong Yan Yi; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-05

7.  1,1-Dibenzyl-3-(4-fluoro-benzo-yl)thio-urea.

Authors:  Mohd Faizal Md Nasir; Ibrahim N Hassan; Wan Ramli Wan Daud; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

8.  Crystal structure of N-carbamo-thioyl-2-methyl-benzamide.

Authors:  Farook Adam; Nadiah Ameram; Wai Mun Tan
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-05-28

9.  4-Methyl-N-[2-(pyridin-2-yl)ethyl-carbamo-thio-yl]benzamide.

Authors:  Farook Adam; Nadiah Ameram; Naser Eltaher Eltayeb
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-07-31
  9 in total

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