Literature DB >> 25249927

4-Methyl-N-[2-(pyridin-2-yl)ethyl-carbamo-thio-yl]benzamide.

Farook Adam1, Nadiah Ameram1, Naser Eltaher Eltayeb2.   

Abstract

In the title compound, C16H17N3OS, the dihedral angle between the planes of the n class="Chemical">benzene and pyridine rings is 71.33 (15)°. An intra-molecular N-H⋯O hydrogen bond is present. In the crystal, weak aromatic C-H⋯O hydrogen bonds link the mol-ecules into chains extending along a.

Entities:  

Keywords:  benzamide; crystal structure; hydrogen bonding; thio­carbonyl groups; thio­urea compounds

Year:  2014        PMID: 25249927      PMCID: PMC4158510          DOI: 10.1107/S1600536814016377

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Saeed & Flörke (2007 ▶); Yusof et al. (2008 ▶, 2011 ▶); Shoukat et al. (2007 ▶); Hassan et al. (2008a ▶,b ▶,c ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For graph-set analysis, see Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H17N3OS M = 299.39 Monoclinic, a = 16.0467 (12) Å b = 4.8824 (4) Å c = 23.0403 (18) Å β = 124.997 (5)° V = 1478.7 (2) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 100 K 0.47 × 0.20 × 0.14 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.903, T max = 0.980 12777 measured reflections 3409 independent reflections 2221 reflections with I > 2σ(I) R int = 0.082

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.182 S = 1.04 3409 reflections 199 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.66 e Å−3 Δρmin = −0.44 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814016377/zs2306sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814016377/zs2306Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814016377/zs2306Isup3.cml CCDC reference: 1014035 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H17N3OSF(000) = 632
Mr = 299.39Dx = 1.345 Mg m3
Monoclinic, P21/cMelting point: 399.3 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 16.0467 (12) Åθ = 2.6–25.5°
b = 4.8824 (4) ŵ = 0.22 mm1
c = 23.0403 (18) ÅT = 100 K
β = 124.997 (5)°Block, colourless
V = 1478.7 (2) Å30.47 × 0.20 × 0.14 mm
Z = 4
Bruker APEXII CCD diffractometer3409 independent reflections
Radiation source: fine-focus sealed tube2221 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.082
φ and ω scansθmax = 27.6°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −17→20
Tmin = 0.903, Tmax = 0.980k = −6→6
12777 measured reflectionsl = −30→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.182H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0899P)2] where P = (Fo2 + 2Fc2)/3
3409 reflections(Δ/σ)max < 0.001
199 parametersΔρmax = 0.66 e Å3
0 restraintsΔρmin = −0.44 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.72652 (6)0.04528 (17)0.87044 (4)0.0286 (3)
O20.78657 (14)0.5226 (4)0.72802 (11)0.0272 (5)
N10.69712 (19)0.3898 (5)0.77218 (13)0.0227 (6)
N20.84392 (17)0.1337 (5)0.82384 (13)0.0211 (5)
N31.02858 (17)0.3126 (5)0.84401 (12)0.0229 (6)
C10.6442 (2)0.9043 (6)0.63777 (15)0.0236 (7)
H1A0.70340.87590.63860.028*
C20.5737 (2)1.0965 (6)0.59246 (15)0.0250 (7)
H2A0.58531.19960.56270.030*
C30.4852 (2)1.1422 (6)0.58956 (15)0.0227 (6)
C40.4718 (2)0.9901 (6)0.63468 (16)0.0246 (7)
H4A0.41281.01990.63410.030*
C50.5426 (2)0.7954 (6)0.68073 (15)0.0245 (7)
H5A0.53150.69330.71080.029*
C60.6301 (2)0.7508 (6)0.68249 (14)0.0200 (6)
C70.7113 (2)0.5479 (6)0.72911 (14)0.0203 (6)
C80.7611 (2)0.1903 (6)0.82127 (15)0.0218 (6)
C90.9261 (2)−0.0462 (6)0.87572 (15)0.0240 (7)
H9A0.9508−0.15560.85230.029*
H9B0.9001−0.17430.89520.029*
C101.0135 (2)0.1207 (6)0.93572 (15)0.0242 (7)
H10A0.98740.23300.95780.029*
H10B1.0650−0.00660.97230.029*
C111.0649 (2)0.3085 (6)0.91261 (15)0.0224 (6)
C121.1454 (2)0.4739 (6)0.96253 (16)0.0282 (7)
H12A1.17070.46331.01120.034*
C131.1880 (2)0.6550 (7)0.93981 (18)0.0315 (8)
H13A1.24260.77100.97280.038*
C141.1503 (2)0.6643 (6)0.86918 (18)0.0323 (8)
H14A1.17750.78820.85230.039*
C151.0716 (2)0.4885 (6)0.82314 (17)0.0269 (7)
H15A1.04660.49190.77450.032*
C160.4073 (2)1.3480 (6)0.53901 (16)0.0279 (7)
H16C0.35791.37830.55050.042*
H16D0.37211.27870.49040.042*
H16A0.44121.52110.54310.042*
H1N20.852 (2)0.242 (7)0.7974 (17)0.039 (10)*
H1N10.651 (3)0.424 (9)0.775 (2)0.078 (15)*
U11U22U33U12U13U23
S10.0251 (4)0.0384 (5)0.0310 (5)0.0068 (3)0.0211 (4)0.0085 (3)
O20.0175 (11)0.0343 (12)0.0359 (12)0.0052 (9)0.0189 (10)0.0070 (9)
N10.0166 (13)0.0302 (14)0.0268 (14)0.0042 (10)0.0157 (12)0.0023 (10)
N20.0151 (12)0.0249 (14)0.0253 (14)0.0030 (10)0.0127 (11)0.0040 (10)
N30.0185 (13)0.0269 (14)0.0266 (14)0.0036 (10)0.0149 (11)0.0030 (10)
C10.0173 (14)0.0322 (17)0.0246 (16)−0.0003 (12)0.0140 (13)0.0001 (12)
C20.0212 (15)0.0317 (17)0.0258 (16)0.0013 (12)0.0156 (13)0.0055 (13)
C30.0184 (15)0.0252 (16)0.0234 (16)0.0012 (12)0.0114 (13)−0.0001 (12)
C40.0180 (15)0.0286 (16)0.0311 (17)0.0010 (12)0.0163 (13)0.0005 (13)
C50.0235 (16)0.0284 (17)0.0273 (16)0.0017 (12)0.0180 (14)0.0038 (13)
C60.0154 (14)0.0229 (15)0.0214 (15)−0.0028 (11)0.0104 (12)−0.0031 (11)
C70.0165 (14)0.0234 (15)0.0212 (15)−0.0030 (11)0.0109 (12)−0.0029 (12)
C80.0173 (14)0.0265 (16)0.0222 (15)0.0005 (12)0.0116 (12)0.0002 (12)
C90.0208 (15)0.0247 (16)0.0303 (17)0.0046 (12)0.0169 (14)0.0056 (12)
C100.0180 (15)0.0315 (17)0.0238 (16)0.0037 (12)0.0124 (13)0.0037 (12)
C110.0156 (15)0.0248 (16)0.0285 (16)0.0051 (12)0.0137 (13)0.0030 (12)
C120.0216 (16)0.0360 (18)0.0268 (17)−0.0014 (13)0.0137 (14)−0.0002 (13)
C130.0214 (16)0.0293 (17)0.044 (2)−0.0020 (13)0.0185 (15)−0.0035 (14)
C140.0265 (17)0.0298 (18)0.052 (2)0.0030 (14)0.0292 (17)0.0059 (15)
C150.0246 (16)0.0330 (18)0.0327 (17)0.0063 (13)0.0220 (14)0.0052 (13)
C160.0229 (16)0.0327 (18)0.0286 (17)0.0048 (13)0.0150 (14)0.0027 (13)
S1—C81.678 (3)C5—H5A0.9500
O2—C71.228 (3)C6—C71.493 (4)
N1—C71.376 (4)C9—C101.523 (4)
N1—C81.397 (4)C9—H9A0.9900
N1—H1N10.80 (5)C9—H9B0.9900
N2—C81.325 (3)C10—C111.519 (4)
N2—C91.460 (3)C10—H10A0.9900
N2—H1N20.87 (3)C10—H10B0.9900
N3—C111.335 (4)C11—C121.392 (4)
N3—C151.351 (4)C12—C131.391 (4)
C1—C21.376 (4)C12—H12A0.9500
C1—C61.393 (4)C13—C141.374 (4)
C1—H1A0.9500C13—H13A0.9500
C2—C31.402 (4)C14—C151.386 (4)
C2—H2A0.9500C14—H14A0.9500
C3—C41.390 (4)C15—H15A0.9500
C3—C161.502 (4)C16—H16C0.9800
C4—C51.391 (4)C16—H16D0.9800
C4—H4A0.9500C16—H16A0.9800
C5—C61.399 (4)
C7—N1—C8128.8 (2)N2—C9—H9A109.5
C7—N1—H1N1119 (3)C10—C9—H9A109.5
C8—N1—H1N1111 (3)N2—C9—H9B109.5
C8—N2—C9125.0 (2)C10—C9—H9B109.5
C8—N2—H1N2113 (2)H9A—C9—H9B108.1
C9—N2—H1N2121 (2)C11—C10—C9114.1 (2)
C11—N3—C15117.7 (3)C11—C10—H10A108.7
C2—C1—C6121.1 (3)C9—C10—H10A108.7
C2—C1—H1A119.4C11—C10—H10B108.7
C6—C1—H1A119.4C9—C10—H10B108.7
C1—C2—C3120.9 (3)H10A—C10—H10B107.6
C1—C2—H2A119.5N3—C11—C12122.6 (3)
C3—C2—H2A119.5N3—C11—C10117.9 (3)
C4—C3—C2117.8 (3)C12—C11—C10119.5 (3)
C4—C3—C16121.4 (3)C13—C12—C11118.7 (3)
C2—C3—C16120.8 (3)C13—C12—H12A120.6
C3—C4—C5121.8 (3)C11—C12—H12A120.6
C3—C4—H4A119.1C14—C13—C12119.3 (3)
C5—C4—H4A119.1C14—C13—H13A120.3
C4—C5—C6119.7 (3)C12—C13—H13A120.3
C4—C5—H5A120.2C13—C14—C15118.4 (3)
C6—C5—H5A120.2C13—C14—H14A120.8
C1—C6—C5118.7 (3)C15—C14—H14A120.8
C1—C6—C7116.4 (2)N3—C15—C14123.3 (3)
C5—C6—C7124.9 (2)N3—C15—H15A118.4
O2—C7—N1122.0 (3)C14—C15—H15A118.4
O2—C7—C6121.0 (3)C3—C16—H16C109.5
N1—C7—C6117.0 (2)C3—C16—H16D109.5
N2—C8—N1115.7 (2)H16C—C16—H16D109.5
N2—C8—S1126.4 (2)C3—C16—H16A109.5
N1—C8—S1117.8 (2)H16C—C16—H16A109.5
N2—C9—C10110.5 (2)H16D—C16—H16A109.5
C6—C1—C2—C3−0.5 (5)C9—N2—C8—N1173.5 (3)
C1—C2—C3—C41.0 (4)C9—N2—C8—S1−6.9 (4)
C1—C2—C3—C16−178.7 (3)C7—N1—C8—N2−4.4 (4)
C2—C3—C4—C5−0.9 (4)C7—N1—C8—S1175.9 (2)
C16—C3—C4—C5178.8 (3)C8—N2—C9—C10−98.0 (3)
C3—C4—C5—C60.4 (4)N2—C9—C10—C11−63.9 (3)
C2—C1—C6—C5−0.1 (4)C15—N3—C11—C12−1.0 (4)
C2—C1—C6—C7179.8 (3)C15—N3—C11—C10177.2 (3)
C4—C5—C6—C10.1 (4)C9—C10—C11—N31.1 (4)
C4—C5—C6—C7−179.7 (3)C9—C10—C11—C12179.4 (3)
C8—N1—C7—O22.1 (5)N3—C11—C12—C131.5 (4)
C8—N1—C7—C6−178.7 (3)C10—C11—C12—C13−176.6 (3)
C1—C6—C7—O20.8 (4)C11—C12—C13—C14−0.5 (4)
C5—C6—C7—O2−179.3 (3)C12—C13—C14—C15−0.9 (4)
C1—C6—C7—N1−178.3 (3)C11—N3—C15—C14−0.5 (4)
C5—C6—C7—N11.5 (4)C13—C14—C15—N31.5 (4)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O20.87 (4)1.90 (3)2.645 (3)143 (3)
N2—H1N2···N30.87 (4)2.41 (4)2.860 (4)113 (3)
C1—H1A···O20.952.422.751 (4)100
C9—H9B···S10.992.723.166 (4)108
C14—H14A···O2i0.952.513.421 (4)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H1N2⋯O20.87 (4)1.90 (3)2.645 (3)143 (3)
C14—H14A⋯O2i 0.952.513.421 (4)161

Symmetry code: (i) .

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1.  Crystal structure of 2-methyl-N-{[2-(pyri-din-2-yl)eth-yl]carbamo-thio-yl}benzamide.

Authors:  Nadiah Ameram; Farook Adam
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-08-06

2.  Crystal structure of 2-methyl-N-[(4-methyl-pyridin-2-yl)carbamo-thio-yl]benzamide.

Authors:  Nadiah Ameram; Farook Adam; Nur Nadia Fatihah; Salih Al-Juaid
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-04-30

3.  Crystal structure of 4-methyl-N-[(4-methyl-pyridin-2-yl)carbamo-thioyl]-benzamide.

Authors:  Farook Adam; Nadiah Ameram; Naser Eltaher Eltayeb
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  3 in total

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