Literature DB >> 21201710

Ethyl 2-(3-benzoyl-thio-ureido)acetate.

Ibrahim N Hassan1, Bohari M Yamin, Mohammad B Kassim.   

Abstract

The title compound, C(12)H(14)N(2)O(3)S, adopts a cis-trans geometry of the thio-urea group and is stabilized by intra-molecular hydrogen bonds between the carbonyl O atoms and the H atom of the thio-amide group and by a C-H⋯S interaction. Mol-ecules are linked by two inter-molecular hydrogen bonds (C-H⋯O and N-H⋯O), forming a one-dimensional chain parallel to the c axis.

Entities:  

Year:  2008        PMID: 21201710      PMCID: PMC2960614          DOI: 10.1107/S1600536808024896

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Allen et al. (1987 ▶); Ngah et al. (2005 ▶); Yamin & Hassan (2004 ▶); Yamin & Yusof (2003 ▶).

Experimental

Crystal data

C12H14N2O3S M = 266.31 Monoclinic, a = 11.908 (4) Å b = 7.795 (3) Å c = 14.024 (5) Å β = 95.600 (5)° V = 1295.5 (8) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 298 (2) K 0.46 × 0.36 × 0.22 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.893, T max = 0.947 6762 measured reflections 2537 independent reflections 1967 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.107 S = 1.05 2537 reflections 164 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808024896/at2606sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808024896/at2606Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14N2O3SF000 = 560
Mr = 266.31Dx = 1.365 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2409 reflections
a = 11.908 (4) Åθ = 1.7–26.0º
b = 7.795 (3) ŵ = 0.25 mm1
c = 14.024 (5) ÅT = 298 (2) K
β = 95.600 (5)ºBlock, colourless
V = 1295.5 (8) Å30.46 × 0.36 × 0.22 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer2537 independent reflections
Radiation source: fine-focus sealed tube1967 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.021
T = 298(2) Kθmax = 26.0º
ω scansθmin = 1.7º
Absorption correction: multi-scan(SADABS; Bruker, 2000)h = −14→13
Tmin = 0.893, Tmax = 0.947k = −9→9
6762 measured reflectionsl = −16→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.107  w = 1/[σ2(Fo2) + (0.0476P)2 + 0.3616P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2537 reflectionsΔρmax = 0.20 e Å3
164 parametersΔρmin = −0.23 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.36516 (4)0.11910 (9)0.60927 (4)0.0632 (2)
O10.01958 (11)0.1765 (2)0.44591 (9)0.0615 (4)
O20.21706 (12)0.0629 (2)0.25554 (10)0.0657 (4)
O30.37578 (11)−0.0928 (2)0.25994 (9)0.0626 (4)
N10.15088 (12)0.2028 (2)0.57452 (10)0.0454 (4)
H10.16130.24280.63190.055*
N20.22969 (13)0.0690 (2)0.45050 (11)0.0506 (4)
H20.16500.08210.41830.061*
C1−0.03537 (15)0.2974 (3)0.68490 (13)0.0482 (5)
H1A0.02420.24120.71960.058*
C2−0.11815 (16)0.3747 (3)0.73213 (14)0.0540 (5)
H2A−0.11450.36960.79860.065*
C3−0.20575 (16)0.4590 (3)0.68161 (15)0.0545 (5)
H3−0.26100.51180.71390.065*
C4−0.21224 (16)0.4658 (3)0.58254 (15)0.0564 (5)
H4−0.27140.52370.54830.068*
C5−0.13077 (15)0.3864 (3)0.53472 (14)0.0506 (5)
H5−0.13610.38870.46810.061*
C6−0.04087 (14)0.3032 (2)0.58545 (12)0.0417 (4)
C70.04366 (15)0.2218 (3)0.52873 (13)0.0455 (4)
C80.24393 (15)0.1270 (2)0.53931 (13)0.0438 (4)
C90.31818 (16)−0.0154 (3)0.40544 (13)0.0530 (5)
H9A0.3234−0.13420.42600.064*
H9B0.38980.03980.42500.064*
C100.29539 (15)−0.0079 (3)0.29841 (13)0.0477 (5)
C110.36926 (19)−0.1060 (4)0.15628 (15)0.0689 (6)
H11A0.3349−0.00350.12700.083*
H11B0.3236−0.20410.13450.083*
C120.4835 (2)−0.1258 (5)0.1294 (2)0.1037 (11)
H12A0.5247−0.02120.14240.155*
H12B0.4808−0.15180.06230.155*
H12C0.5205−0.21760.16580.155*
U11U22U33U12U13U23
S10.0420 (3)0.0982 (5)0.0482 (3)0.0141 (3)−0.0011 (2)−0.0037 (3)
O10.0460 (8)0.0913 (11)0.0454 (8)0.0093 (7)−0.0038 (6)−0.0176 (7)
O20.0519 (8)0.0904 (12)0.0549 (8)0.0172 (8)0.0059 (7)0.0103 (8)
O30.0517 (8)0.0912 (11)0.0451 (8)0.0174 (8)0.0064 (6)−0.0090 (7)
N10.0373 (8)0.0613 (11)0.0374 (8)0.0036 (7)0.0020 (6)−0.0044 (7)
N20.0394 (8)0.0679 (11)0.0440 (9)0.0061 (8)0.0027 (7)−0.0091 (8)
C10.0392 (9)0.0605 (13)0.0441 (10)0.0027 (9)−0.0004 (8)0.0007 (9)
C20.0479 (11)0.0718 (14)0.0423 (10)−0.0006 (10)0.0049 (8)−0.0038 (10)
C30.0431 (10)0.0649 (14)0.0567 (12)0.0026 (10)0.0109 (9)−0.0082 (10)
C40.0413 (10)0.0695 (14)0.0582 (12)0.0115 (10)0.0030 (9)0.0066 (10)
C50.0427 (10)0.0663 (14)0.0420 (10)0.0027 (10)0.0005 (8)0.0031 (9)
C60.0340 (9)0.0472 (11)0.0437 (9)−0.0023 (8)0.0020 (7)−0.0009 (8)
C70.0403 (9)0.0530 (12)0.0425 (10)−0.0013 (8)0.0000 (8)−0.0003 (8)
C80.0403 (9)0.0491 (11)0.0426 (10)0.0020 (8)0.0069 (8)0.0048 (8)
C90.0486 (11)0.0632 (14)0.0479 (11)0.0103 (10)0.0078 (9)−0.0017 (10)
C100.0407 (10)0.0548 (12)0.0480 (10)−0.0036 (9)0.0075 (8)−0.0022 (9)
C110.0648 (13)0.0956 (18)0.0464 (12)0.0088 (13)0.0057 (10)−0.0100 (12)
C120.0712 (17)0.176 (3)0.0673 (16)0.0198 (19)0.0224 (13)−0.0087 (19)
S1—C81.6656 (19)C3—C41.385 (3)
O1—C71.221 (2)C3—H30.9300
O2—C101.194 (2)C4—C51.379 (3)
O3—C101.322 (2)C4—H40.9300
O3—C111.452 (2)C5—C61.387 (3)
N1—C71.380 (2)C5—H50.9300
N1—C81.388 (2)C6—C71.485 (3)
N1—H10.8600C9—C101.500 (3)
N2—C81.320 (2)C9—H9A0.9700
N2—C91.439 (2)C9—H9B0.9700
N2—H20.8600C11—C121.455 (3)
C1—C21.379 (3)C11—H11A0.9700
C1—C61.390 (2)C11—H11B0.9700
C1—H1A0.9300C12—H12A0.9600
C2—C31.370 (3)C12—H12B0.9600
C2—H2A0.9300C12—H12C0.9600
C10—O3—C11118.29 (16)O1—C7—C6121.65 (16)
C7—N1—C8127.91 (15)N1—C7—C6116.19 (15)
C7—N1—H1116.0N2—C8—N1116.61 (15)
C8—N1—H1116.0N2—C8—S1124.54 (14)
C8—N2—C9122.58 (15)N1—C8—S1118.83 (14)
C8—N2—H2118.7N2—C9—C10110.66 (16)
C9—N2—H2118.7N2—C9—H9A109.5
C2—C1—C6120.11 (17)C10—C9—H9A109.5
C2—C1—H1A119.9N2—C9—H9B109.5
C6—C1—H1A119.9C10—C9—H9B109.5
C3—C2—C1120.33 (18)H9A—C9—H9B108.1
C3—C2—H2A119.8O2—C10—O3125.96 (18)
C1—C2—H2A119.8O2—C10—C9125.28 (18)
C2—C3—C4120.14 (18)O3—C10—C9108.75 (16)
C2—C3—H3119.9O3—C11—C12107.9 (2)
C4—C3—H3119.9O3—C11—H11A110.1
C5—C4—C3119.86 (18)C12—C11—H11A110.1
C5—C4—H4120.1O3—C11—H11B110.1
C3—C4—H4120.1C12—C11—H11B110.1
C4—C5—C6120.32 (18)H11A—C11—H11B108.4
C4—C5—H5119.8C11—C12—H12A109.5
C6—C5—H5119.8C11—C12—H12B109.5
C5—C6—C1119.22 (17)H12A—C12—H12B109.5
C5—C6—C7117.04 (16)C11—C12—H12C109.5
C1—C6—C7123.72 (16)H12A—C12—H12C109.5
O1—C7—N1122.16 (17)H12B—C12—H12C109.5
C6—C1—C2—C3−0.6 (3)C5—C6—C7—N1154.41 (18)
C1—C2—C3—C40.6 (3)C1—C6—C7—N1−26.8 (3)
C2—C3—C4—C50.5 (3)C9—N2—C8—N1−178.79 (17)
C3—C4—C5—C6−1.5 (3)C9—N2—C8—S12.7 (3)
C4—C5—C6—C11.5 (3)C7—N1—C8—N21.6 (3)
C4—C5—C6—C7−179.66 (19)C7—N1—C8—S1−179.77 (16)
C2—C1—C6—C5−0.5 (3)C8—N2—C9—C10−158.69 (18)
C2—C1—C6—C7−179.21 (19)C11—O3—C10—O2−1.2 (3)
C8—N1—C7—O1−3.0 (3)C11—O3—C10—C9178.55 (19)
C8—N1—C7—C6177.93 (17)N2—C9—C10—O22.4 (3)
C5—C6—C7—O1−24.7 (3)N2—C9—C10—O3−177.34 (17)
C1—C6—C7—O1154.1 (2)C10—O3—C11—C12153.0 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2···O10.861.952.633 (2)135
N2—H2···O20.862.432.724 (2)101
C9—H9B···S10.972.703.045 (2)101
N1—H1···O2i0.862.353.164 (2)158
C2—H2A···O1i0.932.513.298 (3)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O10.861.952.633 (2)135
N2—H2⋯O20.862.432.724 (2)101
C9—H9B⋯S10.972.703.045 (2)101
N1—H1⋯O2i0.862.353.164 (2)158
C2—H2A⋯O1i0.932.513.298 (3)143

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  18 in total

1.  Methyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14

2.  Butyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-22

3.  Propyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-09

4.  (E)-Methyl 2-(3-cinnamoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11

5.  (E)-Ethyl 2-(3-cinnamoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-09

6.  1,1'-Diphenyl-3,3'-(p-phenyl-enedicarbon-yl)dithio-urea.

Authors:  Wong W Hung; Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-09

7.  2-Bromo-N-(dibenzyl-carbamothioyl)benzamide.

Authors:  Mohd Faizal Md Nasir; Ibrahim N Hassan; Wan Ramli Wan Daud; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

8.  Cinnamoyl-thio-urea.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-13

9.  Methyl 3-(3-benzoyl-thio-ureido)propano-ate.

Authors:  Ibrahim N Hassan; Chong Yan Yi; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-05

10.  N-Benzoyl-N'-(1,10-phenanthrolin-5-yl)thio-urea dichloro-methane hemisolvate monohydrate.

Authors:  Fatisha Liyana Mat Rashid; Lee Yook Heng; Jean-Claude Daran; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-14
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