| Literature DB >> 21201710 |
Ibrahim N Hassan1, Bohari M Yamin, Mohammad B Kassim.
Abstract
The title compound, C(12)H(14)N(2)O(3)S, adopts a cis-trans geometry of the thio-urea group and is stabilized by intra-molecular hydrogen bonds between the carbonyl O atoms and the H atom of the thio-amide group and by a C-H⋯S interaction. Mol-ecules are linked by two inter-molecular hydrogen bonds (C-H⋯O and N-H⋯O), forming a one-dimensional chain parallel to the c axis.Entities:
Year: 2008 PMID: 21201710 PMCID: PMC2960614 DOI: 10.1107/S1600536808024896
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H14N2O3S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2409 reflections |
| θ = 1.7–26.0º | |
| µ = 0.25 mm−1 | |
| β = 95.600 (5)º | Block, colourless |
| 0.46 × 0.36 × 0.22 mm | |
| Bruker SMART APEX CCD area-detector diffractometer | 2537 independent reflections |
| Radiation source: fine-focus sealed tube | 1967 reflections with |
| Monochromator: graphite | |
| θmax = 26.0º | |
| ω scans | θmin = 1.7º |
| Absorption correction: multi-scan(SADABS; Bruker, 2000) | |
| 6762 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 2537 reflections | Δρmax = 0.20 e Å−3 |
| 164 parameters | Δρmin = −0.23 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.36516 (4) | 0.11910 (9) | 0.60927 (4) | 0.0632 (2) | |
| O1 | 0.01958 (11) | 0.1765 (2) | 0.44591 (9) | 0.0615 (4) | |
| O2 | 0.21706 (12) | 0.0629 (2) | 0.25554 (10) | 0.0657 (4) | |
| O3 | 0.37578 (11) | −0.0928 (2) | 0.25994 (9) | 0.0626 (4) | |
| N1 | 0.15088 (12) | 0.2028 (2) | 0.57452 (10) | 0.0454 (4) | |
| H1 | 0.1613 | 0.2428 | 0.6319 | 0.055* | |
| N2 | 0.22969 (13) | 0.0690 (2) | 0.45050 (11) | 0.0506 (4) | |
| H2 | 0.1650 | 0.0821 | 0.4183 | 0.061* | |
| C1 | −0.03537 (15) | 0.2974 (3) | 0.68490 (13) | 0.0482 (5) | |
| H1A | 0.0242 | 0.2412 | 0.7196 | 0.058* | |
| C2 | −0.11815 (16) | 0.3747 (3) | 0.73213 (14) | 0.0540 (5) | |
| H2A | −0.1145 | 0.3696 | 0.7986 | 0.065* | |
| C3 | −0.20575 (16) | 0.4590 (3) | 0.68161 (15) | 0.0545 (5) | |
| H3 | −0.2610 | 0.5118 | 0.7139 | 0.065* | |
| C4 | −0.21224 (16) | 0.4658 (3) | 0.58254 (15) | 0.0564 (5) | |
| H4 | −0.2714 | 0.5237 | 0.5483 | 0.068* | |
| C5 | −0.13077 (15) | 0.3864 (3) | 0.53472 (14) | 0.0506 (5) | |
| H5 | −0.1361 | 0.3887 | 0.4681 | 0.061* | |
| C6 | −0.04087 (14) | 0.3032 (2) | 0.58545 (12) | 0.0417 (4) | |
| C7 | 0.04366 (15) | 0.2218 (3) | 0.52873 (13) | 0.0455 (4) | |
| C8 | 0.24393 (15) | 0.1270 (2) | 0.53931 (13) | 0.0438 (4) | |
| C9 | 0.31818 (16) | −0.0154 (3) | 0.40544 (13) | 0.0530 (5) | |
| H9A | 0.3234 | −0.1342 | 0.4260 | 0.064* | |
| H9B | 0.3898 | 0.0398 | 0.4250 | 0.064* | |
| C10 | 0.29539 (15) | −0.0079 (3) | 0.29841 (13) | 0.0477 (5) | |
| C11 | 0.36926 (19) | −0.1060 (4) | 0.15628 (15) | 0.0689 (6) | |
| H11A | 0.3349 | −0.0035 | 0.1270 | 0.083* | |
| H11B | 0.3236 | −0.2041 | 0.1345 | 0.083* | |
| C12 | 0.4835 (2) | −0.1258 (5) | 0.1294 (2) | 0.1037 (11) | |
| H12A | 0.5247 | −0.0212 | 0.1424 | 0.155* | |
| H12B | 0.4808 | −0.1518 | 0.0623 | 0.155* | |
| H12C | 0.5205 | −0.2176 | 0.1658 | 0.155* |
| S1 | 0.0420 (3) | 0.0982 (5) | 0.0482 (3) | 0.0141 (3) | −0.0011 (2) | −0.0037 (3) |
| O1 | 0.0460 (8) | 0.0913 (11) | 0.0454 (8) | 0.0093 (7) | −0.0038 (6) | −0.0176 (7) |
| O2 | 0.0519 (8) | 0.0904 (12) | 0.0549 (8) | 0.0172 (8) | 0.0059 (7) | 0.0103 (8) |
| O3 | 0.0517 (8) | 0.0912 (11) | 0.0451 (8) | 0.0174 (8) | 0.0064 (6) | −0.0090 (7) |
| N1 | 0.0373 (8) | 0.0613 (11) | 0.0374 (8) | 0.0036 (7) | 0.0020 (6) | −0.0044 (7) |
| N2 | 0.0394 (8) | 0.0679 (11) | 0.0440 (9) | 0.0061 (8) | 0.0027 (7) | −0.0091 (8) |
| C1 | 0.0392 (9) | 0.0605 (13) | 0.0441 (10) | 0.0027 (9) | −0.0004 (8) | 0.0007 (9) |
| C2 | 0.0479 (11) | 0.0718 (14) | 0.0423 (10) | −0.0006 (10) | 0.0049 (8) | −0.0038 (10) |
| C3 | 0.0431 (10) | 0.0649 (14) | 0.0567 (12) | 0.0026 (10) | 0.0109 (9) | −0.0082 (10) |
| C4 | 0.0413 (10) | 0.0695 (14) | 0.0582 (12) | 0.0115 (10) | 0.0030 (9) | 0.0066 (10) |
| C5 | 0.0427 (10) | 0.0663 (14) | 0.0420 (10) | 0.0027 (10) | 0.0005 (8) | 0.0031 (9) |
| C6 | 0.0340 (9) | 0.0472 (11) | 0.0437 (9) | −0.0023 (8) | 0.0020 (7) | −0.0009 (8) |
| C7 | 0.0403 (9) | 0.0530 (12) | 0.0425 (10) | −0.0013 (8) | 0.0000 (8) | −0.0003 (8) |
| C8 | 0.0403 (9) | 0.0491 (11) | 0.0426 (10) | 0.0020 (8) | 0.0069 (8) | 0.0048 (8) |
| C9 | 0.0486 (11) | 0.0632 (14) | 0.0479 (11) | 0.0103 (10) | 0.0078 (9) | −0.0017 (10) |
| C10 | 0.0407 (10) | 0.0548 (12) | 0.0480 (10) | −0.0036 (9) | 0.0075 (8) | −0.0022 (9) |
| C11 | 0.0648 (13) | 0.0956 (18) | 0.0464 (12) | 0.0088 (13) | 0.0057 (10) | −0.0100 (12) |
| C12 | 0.0712 (17) | 0.176 (3) | 0.0673 (16) | 0.0198 (19) | 0.0224 (13) | −0.0087 (19) |
| S1—C8 | 1.6656 (19) | C3—C4 | 1.385 (3) |
| O1—C7 | 1.221 (2) | C3—H3 | 0.9300 |
| O2—C10 | 1.194 (2) | C4—C5 | 1.379 (3) |
| O3—C10 | 1.322 (2) | C4—H4 | 0.9300 |
| O3—C11 | 1.452 (2) | C5—C6 | 1.387 (3) |
| N1—C7 | 1.380 (2) | C5—H5 | 0.9300 |
| N1—C8 | 1.388 (2) | C6—C7 | 1.485 (3) |
| N1—H1 | 0.8600 | C9—C10 | 1.500 (3) |
| N2—C8 | 1.320 (2) | C9—H9A | 0.9700 |
| N2—C9 | 1.439 (2) | C9—H9B | 0.9700 |
| N2—H2 | 0.8600 | C11—C12 | 1.455 (3) |
| C1—C2 | 1.379 (3) | C11—H11A | 0.9700 |
| C1—C6 | 1.390 (2) | C11—H11B | 0.9700 |
| C1—H1A | 0.9300 | C12—H12A | 0.9600 |
| C2—C3 | 1.370 (3) | C12—H12B | 0.9600 |
| C2—H2A | 0.9300 | C12—H12C | 0.9600 |
| C10—O3—C11 | 118.29 (16) | O1—C7—C6 | 121.65 (16) |
| C7—N1—C8 | 127.91 (15) | N1—C7—C6 | 116.19 (15) |
| C7—N1—H1 | 116.0 | N2—C8—N1 | 116.61 (15) |
| C8—N1—H1 | 116.0 | N2—C8—S1 | 124.54 (14) |
| C8—N2—C9 | 122.58 (15) | N1—C8—S1 | 118.83 (14) |
| C8—N2—H2 | 118.7 | N2—C9—C10 | 110.66 (16) |
| C9—N2—H2 | 118.7 | N2—C9—H9A | 109.5 |
| C2—C1—C6 | 120.11 (17) | C10—C9—H9A | 109.5 |
| C2—C1—H1A | 119.9 | N2—C9—H9B | 109.5 |
| C6—C1—H1A | 119.9 | C10—C9—H9B | 109.5 |
| C3—C2—C1 | 120.33 (18) | H9A—C9—H9B | 108.1 |
| C3—C2—H2A | 119.8 | O2—C10—O3 | 125.96 (18) |
| C1—C2—H2A | 119.8 | O2—C10—C9 | 125.28 (18) |
| C2—C3—C4 | 120.14 (18) | O3—C10—C9 | 108.75 (16) |
| C2—C3—H3 | 119.9 | O3—C11—C12 | 107.9 (2) |
| C4—C3—H3 | 119.9 | O3—C11—H11A | 110.1 |
| C5—C4—C3 | 119.86 (18) | C12—C11—H11A | 110.1 |
| C5—C4—H4 | 120.1 | O3—C11—H11B | 110.1 |
| C3—C4—H4 | 120.1 | C12—C11—H11B | 110.1 |
| C4—C5—C6 | 120.32 (18) | H11A—C11—H11B | 108.4 |
| C4—C5—H5 | 119.8 | C11—C12—H12A | 109.5 |
| C6—C5—H5 | 119.8 | C11—C12—H12B | 109.5 |
| C5—C6—C1 | 119.22 (17) | H12A—C12—H12B | 109.5 |
| C5—C6—C7 | 117.04 (16) | C11—C12—H12C | 109.5 |
| C1—C6—C7 | 123.72 (16) | H12A—C12—H12C | 109.5 |
| O1—C7—N1 | 122.16 (17) | H12B—C12—H12C | 109.5 |
| C6—C1—C2—C3 | −0.6 (3) | C5—C6—C7—N1 | 154.41 (18) |
| C1—C2—C3—C4 | 0.6 (3) | C1—C6—C7—N1 | −26.8 (3) |
| C2—C3—C4—C5 | 0.5 (3) | C9—N2—C8—N1 | −178.79 (17) |
| C3—C4—C5—C6 | −1.5 (3) | C9—N2—C8—S1 | 2.7 (3) |
| C4—C5—C6—C1 | 1.5 (3) | C7—N1—C8—N2 | 1.6 (3) |
| C4—C5—C6—C7 | −179.66 (19) | C7—N1—C8—S1 | −179.77 (16) |
| C2—C1—C6—C5 | −0.5 (3) | C8—N2—C9—C10 | −158.69 (18) |
| C2—C1—C6—C7 | −179.21 (19) | C11—O3—C10—O2 | −1.2 (3) |
| C8—N1—C7—O1 | −3.0 (3) | C11—O3—C10—C9 | 178.55 (19) |
| C8—N1—C7—C6 | 177.93 (17) | N2—C9—C10—O2 | 2.4 (3) |
| C5—C6—C7—O1 | −24.7 (3) | N2—C9—C10—O3 | −177.34 (17) |
| C1—C6—C7—O1 | 154.1 (2) | C10—O3—C11—C12 | 153.0 (2) |
| H··· | ||||
| N2—H2···O1 | 0.86 | 1.95 | 2.633 (2) | 135 |
| N2—H2···O2 | 0.86 | 2.43 | 2.724 (2) | 101 |
| C9—H9B···S1 | 0.97 | 2.70 | 3.045 (2) | 101 |
| N1—H1···O2i | 0.86 | 2.35 | 3.164 (2) | 158 |
| C2—H2A···O1i | 0.93 | 2.51 | 3.298 (3) | 143 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯O1 | 0.86 | 1.95 | 2.633 (2) | 135 |
| N2—H2⋯O2 | 0.86 | 2.43 | 2.724 (2) | 101 |
| C9—H9 | 0.97 | 2.70 | 3.045 (2) | 101 |
| N1—H1⋯O2i | 0.86 | 2.35 | 3.164 (2) | 158 |
| C2—H2 | 0.93 | 2.51 | 3.298 (3) | 143 |
Symmetry code: (i) .