Literature DB >> 21588609

(E)-Methyl 2-(3-cinnamoyl-thio-ureido)acetate.

Ibrahim N Hassan1, Bohari M Yamin, Mohammad B Kassim.   

Abstract

In the title compound, C(13)H(14)N(2)O(3)S, the methyl 2-(3-formyl-thio-ureido)acetate fragment and the phenyl ring adopt an E configuration. The mol-ecule exhibits an intra-molecular N-H⋯O hydrogen bond, which completes a six-membered ring. The crystal packing is stabilized by inter-molecular N-H⋯S contacts, generating a two-dimensional hydrogen-bonding network.

Entities:  

Year:  2010        PMID: 21588609      PMCID: PMC3007976          DOI: 10.1107/S1600536810030084

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For related structures, see: Yamin & Hassan (2004 ▶); Hassan et al. (2008a ▶,b ▶,c ▶, 2009 ▶); Hung et al. (2010 ▶). For the preparation, see: Hassan et al. (2008a ▶).

Experimental

Crystal data

C13H14N2O3S M = 278.33 Triclinic, a = 4.992 (2) Å b = 11.720 (5) Å c = 12.542 (6) Å α = 112.999 (7)° β = 91.492 (7)° γ = 96.258 (7)° V = 669.6 (5) Å3 Z = 2 Mo Kα radiation μ = 0.25 mm−1 T = 298 K 0.38 × 0.32 × 0.13 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.912, T max = 0.969 6562 measured reflections 2466 independent reflections 1689 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.068 wR(F 2) = 0.173 S = 1.12 2466 reflections 180 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.31 e Å−3 Δρmin = −0.36 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810030084/kp2273sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030084/kp2273Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14N2O3SZ = 2
Mr = 278.33F(000) = 292
Triclinic, P1Dx = 1.381 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 4.992 (2) ÅCell parameters from 1753 reflections
b = 11.720 (5) Åθ = 1.8–25.5°
c = 12.542 (6) ŵ = 0.25 mm1
α = 112.999 (7)°T = 298 K
β = 91.492 (7)°Block, colourless
γ = 96.258 (7)°0.38 × 0.32 × 0.13 mm
V = 669.6 (5) Å3
Bruker SMART APEX CCD area-detector diffractometer2466 independent reflections
Radiation source: fine-focus sealed tube1689 reflections with I > 2σ(I)
graphiteRint = 0.040
ω scanθmax = 25.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −6→6
Tmin = 0.912, Tmax = 0.969k = −14→14
6562 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.068Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.173H atoms treated by a mixture of independent and constrained refinement
S = 1.12w = 1/[σ2(Fo2) + (0.0832P)2 + 0.1736P] where P = (Fo2 + 2Fc2)/3
2466 reflections(Δ/σ)max < 0.001
180 parametersΔρmax = 0.31 e Å3
2 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.2582 (2)0.96891 (9)0.84472 (8)0.0546 (4)
O10.8785 (5)1.3017 (3)0.8950 (2)0.0691 (9)
O20.6025 (5)1.2077 (3)0.5979 (2)0.0728 (9)
O30.2006 (5)1.1278 (2)0.5020 (2)0.0578 (7)
N10.6772 (6)1.1430 (3)0.9392 (2)0.0423 (7)
N20.4711 (6)1.1404 (3)0.7718 (2)0.0497 (8)
C11.5217 (7)1.3497 (3)1.2458 (3)0.0541 (10)
H1B1.40971.27661.23490.065*
C21.7365 (8)1.3923 (4)1.3298 (3)0.0643 (11)
H2B1.76631.34781.37530.077*
C31.9055 (8)1.4992 (4)1.3466 (3)0.0596 (10)
H3A2.04841.52741.40350.072*
C41.8621 (7)1.5641 (3)1.2790 (3)0.0554 (10)
H4A1.97691.63621.28910.066*
C51.6476 (7)1.5223 (3)1.1957 (3)0.0477 (9)
H5A1.61961.56721.15040.057*
C61.4733 (6)1.4153 (3)1.1780 (3)0.0400 (8)
C71.2554 (7)1.3734 (3)1.0864 (3)0.0453 (8)
H7A1.24141.42371.04520.054*
C81.0742 (6)1.2719 (3)1.0546 (3)0.0428 (8)
H8A1.07491.21931.09420.051*
C90.8735 (7)1.2429 (3)0.9572 (3)0.0479 (9)
C100.4759 (6)1.0896 (3)0.8501 (3)0.0394 (8)
C110.2769 (7)1.0976 (3)0.6722 (3)0.0496 (9)
H11A0.10381.12530.69610.059*
H11B0.25221.00700.63550.059*
C120.3849 (7)1.1516 (3)0.5889 (3)0.0431 (8)
C130.2708 (9)1.1823 (4)0.4194 (3)0.0680 (12)
H13A0.12511.15940.36050.102*
H13B0.43121.15200.38410.102*
H13C0.30271.27160.45880.102*
H2A0.591 (6)1.204 (2)0.787 (3)0.076 (14)*
H1A0.694 (8)1.112 (3)0.990 (3)0.070 (12)*
U11U22U33U12U13U23
S10.0615 (6)0.0558 (6)0.0520 (6)−0.0166 (4)−0.0175 (4)0.0350 (5)
O10.0748 (18)0.0797 (19)0.0662 (17)−0.0313 (15)−0.0313 (14)0.0561 (16)
O20.0507 (17)0.109 (2)0.0733 (19)−0.0241 (16)−0.0172 (14)0.0620 (18)
O30.0570 (15)0.0750 (18)0.0525 (15)−0.0159 (13)−0.0175 (12)0.0450 (14)
N10.0475 (16)0.0468 (17)0.0386 (16)−0.0049 (13)−0.0107 (13)0.0270 (14)
N20.0589 (19)0.0551 (19)0.0407 (16)−0.0160 (15)−0.0173 (14)0.0324 (15)
C10.054 (2)0.058 (2)0.058 (2)−0.0086 (18)−0.0137 (18)0.0368 (19)
C20.066 (3)0.077 (3)0.061 (2)−0.005 (2)−0.019 (2)0.046 (2)
C30.053 (2)0.070 (3)0.050 (2)−0.004 (2)−0.0173 (18)0.023 (2)
C40.050 (2)0.048 (2)0.061 (2)−0.0087 (17)−0.0087 (18)0.0193 (19)
C50.051 (2)0.047 (2)0.051 (2)−0.0028 (17)−0.0041 (17)0.0278 (18)
C60.0392 (18)0.0427 (19)0.0408 (18)−0.0029 (15)0.0001 (15)0.0217 (16)
C70.047 (2)0.049 (2)0.0449 (19)−0.0022 (17)−0.0054 (16)0.0267 (17)
C80.0451 (19)0.050 (2)0.0400 (19)−0.0011 (16)−0.0061 (15)0.0271 (16)
C90.053 (2)0.050 (2)0.045 (2)−0.0034 (17)−0.0062 (17)0.0270 (18)
C100.0424 (19)0.0425 (19)0.0379 (18)0.0021 (15)−0.0024 (15)0.0221 (16)
C110.051 (2)0.059 (2)0.045 (2)−0.0092 (18)−0.0124 (17)0.0330 (17)
C120.046 (2)0.048 (2)0.0401 (19)0.0011 (17)−0.0079 (16)0.0246 (17)
C130.083 (3)0.083 (3)0.056 (2)−0.009 (2)−0.012 (2)0.052 (2)
S1—C101.666 (3)C3—H3A0.9300
O1—C91.226 (4)C4—C51.380 (5)
O2—C121.186 (4)C4—H4A0.9300
O3—C121.329 (4)C5—C61.383 (4)
O3—C131.445 (4)C5—H5A0.9300
N1—C101.381 (4)C6—C71.456 (5)
N1—C91.383 (4)C7—C81.330 (5)
N1—H1A0.859 (10)C7—H7A0.9300
N2—C101.333 (4)C8—C91.466 (5)
N2—C111.447 (4)C8—H8A0.9300
N2—H2A0.859 (10)C11—C121.502 (4)
C1—C61.383 (5)C11—H11A0.9700
C1—C21.387 (5)C11—H11B0.9700
C1—H1B0.9300C13—H13A0.9600
C2—C31.371 (6)C13—H13B0.9600
C2—H2B0.9300C13—H13C0.9600
C3—C41.370 (5)
C12—O3—C13116.2 (3)C8—C7—H7A116.1
C10—N1—C9127.9 (3)C6—C7—H7A116.1
C10—N1—H1A120 (3)C7—C8—C9120.0 (3)
C9—N1—H1A112 (3)C7—C8—H8A120.0
C10—N2—C11124.3 (3)C9—C8—H8A120.0
C10—N2—H2A114 (3)O1—C9—N1121.8 (3)
C11—N2—H2A122 (3)O1—C9—C8122.9 (3)
C6—C1—C2120.3 (3)N1—C9—C8115.3 (3)
C6—C1—H1B119.8N2—C10—N1116.0 (3)
C2—C1—H1B119.8N2—C10—S1123.9 (2)
C3—C2—C1120.8 (4)N1—C10—S1120.2 (2)
C3—C2—H2B119.6N2—C11—C12107.6 (3)
C1—C2—H2B119.6N2—C11—H11A110.2
C4—C3—C2119.4 (3)C12—C11—H11A110.2
C4—C3—H3A120.3N2—C11—H11B110.2
C2—C3—H3A120.3C12—C11—H11B110.2
C3—C4—C5119.8 (3)H11A—C11—H11B108.5
C3—C4—H4A120.1O2—C12—O3124.0 (3)
C5—C4—H4A120.1O2—C12—C11125.7 (3)
C4—C5—C6121.7 (3)O3—C12—C11110.3 (3)
C4—C5—H5A119.2O3—C13—H13A109.5
C6—C5—H5A119.2O3—C13—H13B109.5
C1—C6—C5117.9 (3)H13A—C13—H13B109.5
C1—C6—C7122.8 (3)O3—C13—H13C109.5
C5—C6—C7119.2 (3)H13A—C13—H13C109.5
C8—C7—C6127.8 (3)H13B—C13—H13C109.5
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.861.882.610 (4)142
N1—H1A···S1i0.852.613.463 (4)176
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O10.861.882.610 (4)142
N1—H1A⋯S1i0.852.613.463 (4)176

Symmetry code: (i) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Methyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14

3.  Butyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-22

4.  Propyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-09

5.  1,1'-Diphenyl-3,3'-(p-phenyl-enedicarbon-yl)dithio-urea.

Authors:  Wong W Hung; Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-09

6.  Ethyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-09

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  2 in total

1.  Cinnamoyl-thio-urea.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-13

2.  (E)-2-(3-Cinnamoyl-thio-ureido)acetic acid dimethyl sulfoxide disolvate.

Authors:  Ibrahim N Hassan; Wan Ramli Wan Daud; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-17
  2 in total

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