| Literature DB >> 21588609 |
Ibrahim N Hassan1, Bohari M Yamin, Mohammad B Kassim.
Abstract
In the title compound, C(13)H(14)N(2)O(3)S, the methyl 2-(3-formyl-thio-ureido)acetate fragment and the phenyl ring adopt an E configuration. The mol-ecule exhibits an intra-molecular N-H⋯O hydrogen bond, which completes a six-membered ring. The crystal packing is stabilized by inter-molecular N-H⋯S contacts, generating a two-dimensional hydrogen-bonding network.Entities:
Year: 2010 PMID: 21588609 PMCID: PMC3007976 DOI: 10.1107/S1600536810030084
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H14N2O3S | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1753 reflections | |
| θ = 1.8–25.5° | |
| µ = 0.25 mm−1 | |
| α = 112.999 (7)° | |
| β = 91.492 (7)° | Block, colourless |
| γ = 96.258 (7)° | 0.38 × 0.32 × 0.13 mm |
| Bruker SMART APEX CCD area-detector diffractometer | 2466 independent reflections |
| Radiation source: fine-focus sealed tube | 1689 reflections with |
| graphite | |
| ω scan | θmax = 25.5°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 6562 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2466 reflections | (Δ/σ)max < 0.001 |
| 180 parameters | Δρmax = 0.31 e Å−3 |
| 2 restraints | Δρmin = −0.36 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.2582 (2) | 0.96891 (9) | 0.84472 (8) | 0.0546 (4) | |
| O1 | 0.8785 (5) | 1.3017 (3) | 0.8950 (2) | 0.0691 (9) | |
| O2 | 0.6025 (5) | 1.2077 (3) | 0.5979 (2) | 0.0728 (9) | |
| O3 | 0.2006 (5) | 1.1278 (2) | 0.5020 (2) | 0.0578 (7) | |
| N1 | 0.6772 (6) | 1.1430 (3) | 0.9392 (2) | 0.0423 (7) | |
| N2 | 0.4711 (6) | 1.1404 (3) | 0.7718 (2) | 0.0497 (8) | |
| C1 | 1.5217 (7) | 1.3497 (3) | 1.2458 (3) | 0.0541 (10) | |
| H1B | 1.4097 | 1.2766 | 1.2349 | 0.065* | |
| C2 | 1.7365 (8) | 1.3923 (4) | 1.3298 (3) | 0.0643 (11) | |
| H2B | 1.7663 | 1.3478 | 1.3753 | 0.077* | |
| C3 | 1.9055 (8) | 1.4992 (4) | 1.3466 (3) | 0.0596 (10) | |
| H3A | 2.0484 | 1.5274 | 1.4035 | 0.072* | |
| C4 | 1.8621 (7) | 1.5641 (3) | 1.2790 (3) | 0.0554 (10) | |
| H4A | 1.9769 | 1.6362 | 1.2891 | 0.066* | |
| C5 | 1.6476 (7) | 1.5223 (3) | 1.1957 (3) | 0.0477 (9) | |
| H5A | 1.6196 | 1.5672 | 1.1504 | 0.057* | |
| C6 | 1.4733 (6) | 1.4153 (3) | 1.1780 (3) | 0.0400 (8) | |
| C7 | 1.2554 (7) | 1.3734 (3) | 1.0864 (3) | 0.0453 (8) | |
| H7A | 1.2414 | 1.4237 | 1.0452 | 0.054* | |
| C8 | 1.0742 (6) | 1.2719 (3) | 1.0546 (3) | 0.0428 (8) | |
| H8A | 1.0749 | 1.2193 | 1.0942 | 0.051* | |
| C9 | 0.8735 (7) | 1.2429 (3) | 0.9572 (3) | 0.0479 (9) | |
| C10 | 0.4759 (6) | 1.0896 (3) | 0.8501 (3) | 0.0394 (8) | |
| C11 | 0.2769 (7) | 1.0976 (3) | 0.6722 (3) | 0.0496 (9) | |
| H11A | 0.1038 | 1.1253 | 0.6961 | 0.059* | |
| H11B | 0.2522 | 1.0070 | 0.6355 | 0.059* | |
| C12 | 0.3849 (7) | 1.1516 (3) | 0.5889 (3) | 0.0431 (8) | |
| C13 | 0.2708 (9) | 1.1823 (4) | 0.4194 (3) | 0.0680 (12) | |
| H13A | 0.1251 | 1.1594 | 0.3605 | 0.102* | |
| H13B | 0.4312 | 1.1520 | 0.3841 | 0.102* | |
| H13C | 0.3027 | 1.2716 | 0.4588 | 0.102* | |
| H2A | 0.591 (6) | 1.204 (2) | 0.787 (3) | 0.076 (14)* | |
| H1A | 0.694 (8) | 1.112 (3) | 0.990 (3) | 0.070 (12)* |
| S1 | 0.0615 (6) | 0.0558 (6) | 0.0520 (6) | −0.0166 (4) | −0.0175 (4) | 0.0350 (5) |
| O1 | 0.0748 (18) | 0.0797 (19) | 0.0662 (17) | −0.0313 (15) | −0.0313 (14) | 0.0561 (16) |
| O2 | 0.0507 (17) | 0.109 (2) | 0.0733 (19) | −0.0241 (16) | −0.0172 (14) | 0.0620 (18) |
| O3 | 0.0570 (15) | 0.0750 (18) | 0.0525 (15) | −0.0159 (13) | −0.0175 (12) | 0.0450 (14) |
| N1 | 0.0475 (16) | 0.0468 (17) | 0.0386 (16) | −0.0049 (13) | −0.0107 (13) | 0.0270 (14) |
| N2 | 0.0589 (19) | 0.0551 (19) | 0.0407 (16) | −0.0160 (15) | −0.0173 (14) | 0.0324 (15) |
| C1 | 0.054 (2) | 0.058 (2) | 0.058 (2) | −0.0086 (18) | −0.0137 (18) | 0.0368 (19) |
| C2 | 0.066 (3) | 0.077 (3) | 0.061 (2) | −0.005 (2) | −0.019 (2) | 0.046 (2) |
| C3 | 0.053 (2) | 0.070 (3) | 0.050 (2) | −0.004 (2) | −0.0173 (18) | 0.023 (2) |
| C4 | 0.050 (2) | 0.048 (2) | 0.061 (2) | −0.0087 (17) | −0.0087 (18) | 0.0193 (19) |
| C5 | 0.051 (2) | 0.047 (2) | 0.051 (2) | −0.0028 (17) | −0.0041 (17) | 0.0278 (18) |
| C6 | 0.0392 (18) | 0.0427 (19) | 0.0408 (18) | −0.0029 (15) | 0.0001 (15) | 0.0217 (16) |
| C7 | 0.047 (2) | 0.049 (2) | 0.0449 (19) | −0.0022 (17) | −0.0054 (16) | 0.0267 (17) |
| C8 | 0.0451 (19) | 0.050 (2) | 0.0400 (19) | −0.0011 (16) | −0.0061 (15) | 0.0271 (16) |
| C9 | 0.053 (2) | 0.050 (2) | 0.045 (2) | −0.0034 (17) | −0.0062 (17) | 0.0270 (18) |
| C10 | 0.0424 (19) | 0.0425 (19) | 0.0379 (18) | 0.0021 (15) | −0.0024 (15) | 0.0221 (16) |
| C11 | 0.051 (2) | 0.059 (2) | 0.045 (2) | −0.0092 (18) | −0.0124 (17) | 0.0330 (17) |
| C12 | 0.046 (2) | 0.048 (2) | 0.0401 (19) | 0.0011 (17) | −0.0079 (16) | 0.0246 (17) |
| C13 | 0.083 (3) | 0.083 (3) | 0.056 (2) | −0.009 (2) | −0.012 (2) | 0.052 (2) |
| S1—C10 | 1.666 (3) | C3—H3A | 0.9300 |
| O1—C9 | 1.226 (4) | C4—C5 | 1.380 (5) |
| O2—C12 | 1.186 (4) | C4—H4A | 0.9300 |
| O3—C12 | 1.329 (4) | C5—C6 | 1.383 (4) |
| O3—C13 | 1.445 (4) | C5—H5A | 0.9300 |
| N1—C10 | 1.381 (4) | C6—C7 | 1.456 (5) |
| N1—C9 | 1.383 (4) | C7—C8 | 1.330 (5) |
| N1—H1A | 0.859 (10) | C7—H7A | 0.9300 |
| N2—C10 | 1.333 (4) | C8—C9 | 1.466 (5) |
| N2—C11 | 1.447 (4) | C8—H8A | 0.9300 |
| N2—H2A | 0.859 (10) | C11—C12 | 1.502 (4) |
| C1—C6 | 1.383 (5) | C11—H11A | 0.9700 |
| C1—C2 | 1.387 (5) | C11—H11B | 0.9700 |
| C1—H1B | 0.9300 | C13—H13A | 0.9600 |
| C2—C3 | 1.371 (6) | C13—H13B | 0.9600 |
| C2—H2B | 0.9300 | C13—H13C | 0.9600 |
| C3—C4 | 1.370 (5) | ||
| C12—O3—C13 | 116.2 (3) | C8—C7—H7A | 116.1 |
| C10—N1—C9 | 127.9 (3) | C6—C7—H7A | 116.1 |
| C10—N1—H1A | 120 (3) | C7—C8—C9 | 120.0 (3) |
| C9—N1—H1A | 112 (3) | C7—C8—H8A | 120.0 |
| C10—N2—C11 | 124.3 (3) | C9—C8—H8A | 120.0 |
| C10—N2—H2A | 114 (3) | O1—C9—N1 | 121.8 (3) |
| C11—N2—H2A | 122 (3) | O1—C9—C8 | 122.9 (3) |
| C6—C1—C2 | 120.3 (3) | N1—C9—C8 | 115.3 (3) |
| C6—C1—H1B | 119.8 | N2—C10—N1 | 116.0 (3) |
| C2—C1—H1B | 119.8 | N2—C10—S1 | 123.9 (2) |
| C3—C2—C1 | 120.8 (4) | N1—C10—S1 | 120.2 (2) |
| C3—C2—H2B | 119.6 | N2—C11—C12 | 107.6 (3) |
| C1—C2—H2B | 119.6 | N2—C11—H11A | 110.2 |
| C4—C3—C2 | 119.4 (3) | C12—C11—H11A | 110.2 |
| C4—C3—H3A | 120.3 | N2—C11—H11B | 110.2 |
| C2—C3—H3A | 120.3 | C12—C11—H11B | 110.2 |
| C3—C4—C5 | 119.8 (3) | H11A—C11—H11B | 108.5 |
| C3—C4—H4A | 120.1 | O2—C12—O3 | 124.0 (3) |
| C5—C4—H4A | 120.1 | O2—C12—C11 | 125.7 (3) |
| C4—C5—C6 | 121.7 (3) | O3—C12—C11 | 110.3 (3) |
| C4—C5—H5A | 119.2 | O3—C13—H13A | 109.5 |
| C6—C5—H5A | 119.2 | O3—C13—H13B | 109.5 |
| C1—C6—C5 | 117.9 (3) | H13A—C13—H13B | 109.5 |
| C1—C6—C7 | 122.8 (3) | O3—C13—H13C | 109.5 |
| C5—C6—C7 | 119.2 (3) | H13A—C13—H13C | 109.5 |
| C8—C7—C6 | 127.8 (3) | H13B—C13—H13C | 109.5 |
| H··· | ||||
| N2—H2A···O1 | 0.86 | 1.88 | 2.610 (4) | 142 |
| N1—H1A···S1i | 0.85 | 2.61 | 3.463 (4) | 176 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 1.88 | 2.610 (4) | 142 |
| N1—H1 | 0.85 | 2.61 | 3.463 (4) | 176 |
Symmetry code: (i) .