Literature DB >> 21578808

Methyl 2-(3-benzoyl-thio-ureido)acetate.

Ibrahim N Hassan1, Bohari M Yamin, Mohammad B Kassim.   

Abstract

In the title compound, C(11)H(12)N(2)O(3)S, the n class="Chemical">methyl acetate and benzoyl groups adopt a cis-trans configuration with respect to the thiono S atom across the C-N bonds. An intra-molecular N-H⋯O hydrogen bond is observed. In the crystal packing, mol-ecules are linked by inter-molecular N-H⋯S and C-H⋯O hydrogen bonds to form a two-dimensional network lying parallel to (101).

Entities:  

Year:  2009        PMID: 21578808      PMCID: PMC2972120          DOI: 10.1107/S1600536809046169

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For related structures, see: Hassan et al. (2008a ▶,b ▶,c ▶); Yamin & Hassan (2004 ▶). For the preparation, see: Hassan et al. (2008a ▶).

Experimental

Crystal data

C11H12N2O3S M = 252.29 Monoclinic, a = 14.5804 (15) Å b = 4.9740 (5) Å c = 16.9133 (16) Å β = 96.210 (2)° V = 1219.4 (2) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 298 K 0.48 × 0.14 × 0.06 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.884, T max = 0.984 6881 measured reflections 2264 independent reflections 1600 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.089 wR(F 2) = 0.172 S = 1.24 2264 reflections 154 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809046169/ci2952sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809046169/ci2952Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12N2O3SF(000) = 528
Mr = 252.29Dx = 1.374 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 871 reflections
a = 14.5804 (15) Åθ = 1.8–25.5°
b = 4.9740 (5) ŵ = 0.26 mm1
c = 16.9133 (16) ÅT = 298 K
β = 96.210 (2)°Needle, colourless
V = 1219.4 (2) Å30.48 × 0.14 × 0.06 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer2264 independent reflections
Radiation source: fine-focus sealed tube1600 reflections with I > 2σ(I)
graphiteRint = 0.048
ω scansθmax = 25.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −17→17
Tmin = 0.884, Tmax = 0.984k = −5→6
6881 measured reflectionsl = −17→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.089Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.172H-atom parameters constrained
S = 1.24w = 1/[σ2(Fo2) + (0.0474P)2 + 0.746P] where P = (Fo2 + 2Fc2)/3
2264 reflections(Δ/σ)max = 0.001
154 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.50901 (8)0.0880 (3)0.62465 (7)0.0818 (5)
O10.2035 (2)0.1002 (7)0.53998 (17)0.0725 (10)
N10.3541 (2)−0.0034 (7)0.53458 (18)0.0545 (9)
H1A0.3909−0.08220.50550.065*
C90.3780 (3)0.4046 (9)0.7161 (2)0.0610 (12)
H9A0.33800.55430.72570.073*
H9B0.43880.47630.71050.073*
C60.2391 (3)−0.2034 (9)0.4391 (2)0.0494 (10)
N20.3429 (2)0.2733 (8)0.64340 (18)0.0576 (10)
H2A0.28540.29060.62650.069*
O30.4423 (2)0.3093 (7)0.84511 (17)0.0740 (10)
C70.2621 (3)−0.0237 (9)0.5083 (2)0.0535 (11)
C10.2954 (3)−0.4110 (9)0.4191 (2)0.0555 (11)
H1B0.3509−0.44350.45010.067*
O20.3394 (2)0.0172 (7)0.7891 (2)0.0812 (10)
C100.3840 (3)0.2182 (10)0.7862 (2)0.0553 (11)
C80.3961 (3)0.1265 (9)0.6015 (2)0.0542 (11)
C50.1559 (3)−0.1619 (9)0.3927 (2)0.0602 (12)
H5A0.1168−0.02500.40560.072*
C40.1308 (3)−0.3236 (10)0.3269 (3)0.0654 (13)
H4A0.0753−0.29380.29560.078*
C30.1877 (4)−0.5258 (11)0.3085 (3)0.0704 (14)
H3A0.1707−0.63520.26470.084*
C20.2700 (3)−0.5688 (10)0.3542 (3)0.0640 (13)
H2B0.3088−0.70620.34090.077*
C110.4497 (4)0.1530 (13)0.9180 (3)0.0918 (19)
H11A0.49370.23620.95680.138*
H11B0.4698−0.02590.90740.138*
H11C0.39060.14540.93810.138*
U11U22U33U12U13U23
S10.0492 (7)0.1335 (14)0.0612 (8)0.0052 (8)−0.0012 (5)−0.0188 (8)
O10.0499 (18)0.093 (3)0.075 (2)0.0001 (17)0.0082 (15)−0.0248 (19)
N10.0436 (19)0.070 (3)0.049 (2)0.0069 (17)0.0017 (15)−0.0076 (18)
C90.065 (3)0.059 (3)0.058 (3)−0.006 (2)0.006 (2)−0.009 (2)
C60.049 (2)0.055 (3)0.045 (2)−0.014 (2)0.0068 (19)0.003 (2)
N20.052 (2)0.066 (3)0.054 (2)0.0030 (19)−0.0007 (17)−0.0090 (19)
O30.073 (2)0.095 (3)0.0531 (18)−0.0153 (19)0.0021 (15)−0.0035 (18)
C70.048 (2)0.058 (3)0.055 (3)−0.002 (2)0.008 (2)0.002 (2)
C10.062 (3)0.051 (3)0.054 (3)−0.004 (2)0.005 (2)0.001 (2)
O20.092 (2)0.065 (2)0.086 (2)−0.017 (2)0.0060 (18)0.0004 (19)
C100.051 (3)0.056 (3)0.060 (3)0.001 (2)0.014 (2)−0.009 (2)
C80.054 (3)0.062 (3)0.045 (2)−0.001 (2)0.0012 (19)0.001 (2)
C50.058 (3)0.060 (3)0.063 (3)−0.007 (2)0.008 (2)−0.003 (2)
C40.059 (3)0.075 (4)0.059 (3)−0.016 (3)−0.006 (2)0.006 (3)
C30.093 (4)0.063 (3)0.054 (3)−0.018 (3)0.005 (3)−0.004 (3)
C20.080 (3)0.051 (3)0.062 (3)0.000 (2)0.011 (2)−0.005 (2)
C110.098 (4)0.123 (5)0.055 (3)0.017 (4)0.008 (3)0.011 (3)
S1—C81.661 (4)O3—C111.452 (5)
O1—C71.223 (5)C1—C21.368 (6)
N1—C71.371 (5)C1—H1B0.93
N1—C81.387 (5)O2—C101.197 (5)
N1—H1A0.86C5—C41.389 (6)
C9—N21.437 (5)C5—H5A0.93
C9—C101.499 (6)C4—C31.361 (6)
C9—H9A0.97C4—H4A0.93
C9—H9B0.97C3—C21.372 (6)
C6—C11.384 (6)C3—H3A0.93
C6—C51.386 (5)C2—H2B0.93
C6—C71.482 (6)C11—H11A0.96
N2—C81.326 (5)C11—H11B0.96
N2—H2A0.86C11—H11C0.96
O3—C101.318 (5)
C7—N1—C8129.0 (3)O2—C10—C9124.3 (4)
C7—N1—H1A115.5O3—C10—C9111.3 (4)
C8—N1—H1A115.5N2—C8—N1117.4 (4)
N2—C9—C10112.4 (4)N2—C8—S1124.0 (3)
N2—C9—H9A109.1N1—C8—S1118.6 (3)
C10—C9—H9A109.1C6—C5—C4120.4 (4)
N2—C9—H9B109.1C6—C5—H5A119.8
C10—C9—H9B109.1C4—C5—H5A119.8
H9A—C9—H9B107.9C3—C4—C5119.8 (4)
C1—C6—C5118.6 (4)C3—C4—H4A120.1
C1—C6—C7123.6 (4)C5—C4—H4A120.1
C5—C6—C7117.9 (4)C4—C3—C2120.2 (5)
C8—N2—C9122.3 (4)C4—C3—H3A119.9
C8—N2—H2A118.9C2—C3—H3A119.9
C9—N2—H2A118.9C1—C2—C3120.5 (5)
C10—O3—C11116.2 (4)C1—C2—H2B119.8
O1—C7—N1121.8 (4)C3—C2—H2B119.8
O1—C7—C6122.7 (4)O3—C11—H11A109.5
N1—C7—C6115.5 (4)O3—C11—H11B109.5
C2—C1—C6120.5 (4)H11A—C11—H11B109.5
C2—C1—H1B119.7O3—C11—H11C109.5
C6—C1—H1B119.7H11A—C11—H11C109.5
O2—C10—O3124.4 (4)H11B—C11—H11C109.5
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.862.022.676 (4)132
C9—H9B···S10.972.683.027 (4)101
N1—H1A···S1i0.862.773.547 (3)151
C9—H9A···O2ii0.972.543.358 (6)142
C9—H9A···O2iii0.972.583.211 (5)123
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯O10.862.022.676 (4)132
N1—H1A⋯S1i 0.862.773.547 (3)151
C9—H9A⋯O2ii 0.972.543.358 (6)142
C9—H9A⋯O2iii 0.972.583.211 (5)123

Symmetry codes: (i) ; (ii) ; (iii) .

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5.  Methyl 3-(3-benzoyl-thio-ureido)propano-ate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

7.  (E)-2-(3-Cinnamoyl-thio-ureido)acetic acid dimethyl sulfoxide disolvate.

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