Literature DB >> 21754071

Methyl 3-(3-benzoyl-thio-ureido)propano-ate.

Ibrahim N Hassan, Chong Yan Yi, Mohammad B Kassim.   

Abstract

In the title compound, C(12)H(14)N(2)O(3)S, the propyl acetate group and the benzoyl group adopt a cis-trans conformation, respectively, with respect to the thiono S atom across the C-N bonds. The phenyl ring is twisted relative to the the thio-urea mean plane, forming a dihedral angle of 24.16 (9)°. An intra-molecular N-H⋯O hydrogen bond occurs. The crystal packing is stabilized by inter-molecular N-H⋯O and C-H⋯O hydrogen bonds, forming a chain along the a axis.

Entities:  

Year:  2011        PMID: 21754071      PMCID: PMC3100062          DOI: 10.1107/S160053681100568X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For related strutures, see: Yamin & Hassan (2004 ▶); Hassan et al. (2008a ▶,b ▶,c ▶, 2009 ▶), Hung et al. (2010 ▶). For a related synthesis, see: Hassan et al. (2008

Experimental

Crystal data

C12H14N2O3S M = 266.31 Triclinic, a = 7.5901 (18) Å b = 8.2688 (19) Å c = 10.547 (3) Å α = 86.168 (5)° β = 86.892 (4)° γ = 81.545 (4)° V = 652.6 (3) Å3 Z = 2 Mo Kα radiation μ = 0.25 mm−1 T = 298 K 0.35 × 0.31 × 0.23 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.918, T max = 0.945 8953 measured reflections 3229 independent reflections 2654 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.141 S = 1.12 3229 reflections 163 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶), PARST (Nardelli, 1995 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681100568X/dn2657sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681100568X/dn2657Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14N2O3SZ = 2
Mr = 266.31F(000) = 280
Triclinic, P1Dx = 1.355 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.5901 (18) ÅCell parameters from 2861 reflections
b = 8.2688 (19) Åθ = 1.9–28.3°
c = 10.547 (3) ŵ = 0.25 mm1
α = 86.168 (5)°T = 298 K
β = 86.892 (4)°Block, colourless
γ = 81.545 (4)°0.35 × 0.31 × 0.23 mm
V = 652.6 (3) Å3
Bruker SMART APEX CCD area-detector diffractometer3229 independent reflections
Radiation source: fine-focus sealed tube2654 reflections with I > 2σ(I)
graphiteRint = 0.024
ω scansθmax = 28.3°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −10→10
Tmin = 0.918, Tmax = 0.945k = −11→11
8953 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141H-atom parameters constrained
S = 1.12w = 1/[σ2(Fo2) + (0.0624P)2 + 0.1657P] where P = (Fo2 + 2Fc2)/3
3229 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.38506 (7)0.35748 (7)0.87738 (5)0.05290 (19)
O10.2339 (2)0.3507 (2)0.46757 (14)0.0658 (5)
O2−0.1984 (2)0.2418 (2)0.71396 (14)0.0594 (4)
O3−0.1813 (2)0.1042 (2)0.90333 (16)0.0656 (5)
N10.4213 (2)0.3096 (2)0.63147 (15)0.0442 (4)
H1A0.53050.27780.64960.053*
N20.1375 (2)0.4127 (2)0.70422 (15)0.0472 (4)
H2A0.10860.40520.62730.057*
C10.6740 (3)0.1203 (3)0.4582 (2)0.0572 (6)
H1B0.68730.09190.54440.069*
C20.7984 (3)0.0513 (3)0.3688 (3)0.0685 (7)
H2B0.8948−0.02420.39490.082*
C30.7794 (3)0.0944 (3)0.2416 (2)0.0644 (6)
H3A0.86350.04840.18200.077*
C40.6379 (3)0.2044 (3)0.2022 (2)0.0630 (6)
H4A0.62560.23310.11600.076*
C50.5136 (3)0.2726 (3)0.2903 (2)0.0544 (5)
H5A0.41730.34730.26300.065*
C60.5295 (3)0.2318 (2)0.41872 (18)0.0429 (4)
C70.3820 (3)0.3027 (3)0.50660 (18)0.0457 (5)
C80.3050 (3)0.3619 (2)0.73260 (17)0.0412 (4)
C9−0.0010 (3)0.4804 (3)0.7945 (2)0.0524 (5)
H9A−0.09930.53960.74770.063*
H9B0.04630.55840.84320.063*
C10−0.0714 (3)0.3532 (3)0.88575 (19)0.0548 (6)
H10A0.02640.29600.93410.066*
H10B−0.15790.40870.94530.066*
C11−0.1567 (2)0.2306 (3)0.82278 (19)0.0498 (5)
C12−0.2732 (4)−0.0183 (4)0.8564 (3)0.0828 (8)
H12A−0.2834−0.10320.92190.124*
H12B−0.2074−0.06420.78380.124*
H12C−0.39000.03090.83230.124*
U11U22U33U12U13U23
S10.0462 (3)0.0734 (4)0.0374 (3)0.0019 (2)−0.0064 (2)−0.0099 (2)
O10.0455 (8)0.1087 (14)0.0376 (8)0.0111 (8)−0.0050 (6)−0.0092 (8)
O20.0487 (9)0.0918 (12)0.0405 (8)−0.0169 (8)−0.0049 (6)−0.0074 (8)
O30.0587 (10)0.0788 (12)0.0545 (9)0.0018 (8)−0.0010 (8)0.0032 (8)
N10.0347 (8)0.0593 (10)0.0377 (8)−0.0015 (7)−0.0020 (6)−0.0076 (7)
N20.0380 (8)0.0664 (11)0.0360 (8)−0.0001 (8)−0.0033 (6)−0.0086 (7)
C10.0571 (13)0.0664 (14)0.0464 (11)0.0019 (11)−0.0066 (10)−0.0101 (10)
C20.0546 (14)0.0803 (17)0.0663 (15)0.0120 (12)−0.0043 (11)−0.0194 (13)
C30.0532 (13)0.0839 (17)0.0544 (13)−0.0035 (12)0.0137 (10)−0.0200 (12)
C40.0623 (14)0.0824 (17)0.0419 (11)−0.0071 (12)0.0108 (10)−0.0037 (11)
C50.0491 (12)0.0660 (14)0.0450 (11)−0.0022 (10)0.0038 (9)0.0005 (10)
C60.0407 (10)0.0494 (11)0.0400 (10)−0.0096 (8)0.0009 (8)−0.0072 (8)
C70.0434 (10)0.0571 (12)0.0362 (9)−0.0061 (9)−0.0008 (8)−0.0039 (8)
C80.0406 (10)0.0456 (10)0.0369 (9)−0.0042 (8)−0.0007 (7)−0.0043 (8)
C90.0415 (10)0.0669 (14)0.0467 (11)0.0063 (9)−0.0034 (9)−0.0172 (10)
C100.0410 (10)0.0857 (16)0.0365 (10)−0.0008 (10)0.0006 (8)−0.0160 (10)
C110.0300 (9)0.0757 (14)0.0398 (10)0.0046 (9)0.0044 (8)−0.0075 (10)
C120.0768 (19)0.0713 (18)0.098 (2)−0.0117 (15)0.0022 (16)0.0070 (16)
S1—C81.6699 (19)C3—C41.365 (4)
O1—C71.220 (2)C3—H3A0.9300
O2—C111.201 (2)C4—C51.375 (3)
O3—C111.331 (3)C4—H4A0.9300
O3—C121.438 (3)C5—C61.381 (3)
N1—C71.373 (2)C5—H5A0.9300
N1—C81.397 (2)C6—C71.491 (3)
N1—H1A0.8600C9—C101.514 (3)
N2—C81.323 (2)C9—H9A0.9700
N2—C91.454 (2)C9—H9B0.9700
N2—H2A0.8600C10—C111.489 (3)
C1—C21.387 (3)C10—H10A0.9700
C1—C61.388 (3)C10—H10B0.9700
C1—H1B0.9300C12—H12A0.9600
C2—C31.375 (4)C12—H12B0.9600
C2—H2B0.9300C12—H12C0.9600
C11—O3—C12116.5 (2)O1—C7—C6120.56 (18)
C7—N1—C8127.78 (16)N1—C7—C6116.94 (17)
C7—N1—H1A116.1N2—C8—N1116.04 (16)
C8—N1—H1A116.1N2—C8—S1125.16 (15)
C8—N2—C9124.28 (16)N1—C8—S1118.80 (14)
C8—N2—H2A117.9N2—C9—C10113.98 (18)
C9—N2—H2A117.9N2—C9—H9A108.8
C2—C1—C6119.8 (2)C10—C9—H9A108.8
C2—C1—H1B120.1N2—C9—H9B108.8
C6—C1—H1B120.1C10—C9—H9B108.8
C3—C2—C1120.0 (2)H9A—C9—H9B107.7
C3—C2—H2B120.0C11—C10—C9114.09 (17)
C1—C2—H2B120.0C11—C10—H10A108.7
C4—C3—C2120.5 (2)C9—C10—H10A108.7
C4—C3—H3A119.8C11—C10—H10B108.7
C2—C3—H3A119.8C9—C10—H10B108.7
C3—C4—C5119.8 (2)H10A—C10—H10B107.6
C3—C4—H4A120.1O2—C11—O3123.6 (2)
C5—C4—H4A120.1O2—C11—C10125.4 (2)
C4—C5—C6121.0 (2)O3—C11—C10110.98 (18)
C4—C5—H5A119.5O3—C12—H12A109.5
C6—C5—H5A119.5O3—C12—H12B109.5
C5—C6—C1118.93 (19)H12A—C12—H12B109.5
C5—C6—C7117.30 (18)O3—C12—H12C109.5
C1—C6—C7123.63 (18)H12A—C12—H12C109.5
O1—C7—N1122.51 (18)H12B—C12—H12C109.5
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.861.942.625 (2)136
N1—H1A···O2i0.862.173.022 (2)169
C1—H1B···O2i0.932.503.187 (3)130
C9—H9A···O1ii0.972.593.464 (3)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O10.861.942.625 (2)136
N1—H1A⋯O2i0.862.173.022 (2)169
C1—H1B⋯O2i0.932.503.187 (3)130
C9—H9A⋯O1ii0.972.593.464 (3)150

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Methyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14

3.  Butyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-22

4.  Propyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-09

5.  1,1'-Diphenyl-3,3'-(p-phenyl-enedicarbon-yl)dithio-urea.

Authors:  Wong W Hung; Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-09

6.  Ethyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-09

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  (E)-2-(3-Cinnamoyl-thio-ureido)acetic acid dimethyl sulfoxide disolvate.

Authors:  Ibrahim N Hassan; Wan Ramli Wan Daud; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-17
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