Literature DB >> 22091022

1,1-Dibenzyl-3-(4-fluoro-benzo-yl)thio-urea.

Mohd Faizal Md Nasir, Ibrahim N Hassan, Wan Ramli Wan Daud, Bohari M Yamin, Mohammad B Kassim.   

Abstract

In the title compound, C(22)H(19)FN(2)OS, the 2-fluoro-benzoyl group adopts a trans conformation with respect to the thiono S atom across the N-C bond. In the crystal, inter-molecular N-H⋯S, C-H⋯S and C-H⋯O hydrogen bonds link the mol-ecules, forming a two-dimensional network parallel to (101).

Entities:  

Year:  2011        PMID: 22091022      PMCID: PMC3213443          DOI: 10.1107/S1600536811026687

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For standard bond lengths, see: Allen et al. (1987 ▶). For related structures, see: Nasir et al. (2011 ▶); Yamin & Hassan (2004 ▶); Hassan et al. (2008a ▶,b ▶,c ▶, 2009 ▶). For the synthesis, see: Hassan et al. (2008a ▶).

Experimental

Crystal data

C22H19FN2OS M = 378.45 Monoclinic, a = 10.683 (3) Å b = 7.026 (2) Å c = 26.435 (7) Å β = 101.100 (6)° V = 1946.9 (10) Å3 Z = 4 Mo Kα radiation μ = 0.19 mm−1 T = 298 K 0.42 × 0.21 × 0.18 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.925, T max = 0.967 8644 measured reflections 3425 independent reflections 2659 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.138 S = 1.15 3425 reflections 244 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), XP in SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811026687/dn2702sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811026687/dn2702Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811026687/dn2702Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H19FN2OSF(000) = 792
Mr = 378.45Dx = 1.291 Mg m3
Monoclinic, P21/nMelting point: 410 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 10.683 (3) ÅCell parameters from 2659 reflections
b = 7.026 (2) Åθ = 2.0–25.0°
c = 26.435 (7) ŵ = 0.19 mm1
β = 101.100 (6)°T = 298 K
V = 1946.9 (10) Å3Block, colourless
Z = 40.42 × 0.21 × 0.18 mm
Bruker SMART APEX CCD area-detector diffractometer3425 independent reflections
Radiation source: fine-focus sealed tube2659 reflections with I > 2σ(I)
graphiteRint = 0.027
ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −12→8
Tmin = 0.925, Tmax = 0.967k = −8→8
8644 measured reflectionsl = −31→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H-atom parameters constrained
S = 1.15w = 1/[σ2(Fo2) + (0.0542P)2 + 0.5146P] where P = (Fo2 + 2Fc2)/3
3425 reflections(Δ/σ)max < 0.001
244 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.8992 (2)−0.7024 (3)0.17795 (9)0.1137 (8)
S10.47635 (8)0.26603 (10)0.02677 (3)0.0641 (3)
O10.5719 (2)0.0400 (3)0.17142 (7)0.0736 (6)
N10.5164 (2)−0.0377 (3)0.08698 (7)0.0502 (6)
H10.5210−0.12220.06390.060*
N20.3452 (2)0.1514 (3)0.09743 (7)0.0453 (5)
C10.6626 (3)−0.3835 (4)0.11002 (10)0.0570 (7)
H1A0.6047−0.37730.07890.068*
C20.7407 (3)−0.5402 (5)0.12067 (12)0.0697 (8)
H20.7369−0.63910.09700.084*
C30.8236 (3)−0.5463 (5)0.16670 (13)0.0742 (9)
C40.8339 (3)−0.4041 (6)0.20216 (12)0.0807 (10)
H40.8924−0.41200.23310.097*
C50.7554 (3)−0.2481 (5)0.19116 (10)0.0694 (9)
H50.7605−0.15010.21510.083*
C60.6688 (2)−0.2352 (4)0.14481 (9)0.0495 (6)
C70.5840 (2)−0.0665 (4)0.13658 (9)0.0507 (7)
C80.4407 (3)0.1238 (3)0.07298 (8)0.0460 (6)
C90.2742 (3)0.3312 (4)0.09357 (10)0.0532 (7)
H9A0.18420.30520.08150.064*
H9B0.30270.41230.06830.064*
C100.2914 (3)0.4349 (3)0.14432 (9)0.0482 (6)
C110.4099 (3)0.4550 (4)0.17540 (11)0.0627 (8)
H110.48010.39680.16590.075*
C120.4261 (4)0.5594 (5)0.22019 (12)0.0768 (10)
H120.50690.57180.24060.092*
C130.3240 (4)0.6450 (4)0.23477 (12)0.0796 (10)
H130.33510.71640.26490.096*
C140.2052 (4)0.6251 (4)0.20481 (13)0.0776 (10)
H140.13520.68230.21480.093*
C150.1887 (3)0.5196 (4)0.15949 (11)0.0625 (8)
H150.10760.50620.13930.075*
C160.2919 (3)0.0015 (4)0.12613 (9)0.0506 (7)
H16A0.27900.05170.15890.061*
H16B0.3517−0.10360.13300.061*
C170.1667 (3)−0.0689 (4)0.09543 (9)0.0521 (7)
C180.0539 (3)−0.0329 (5)0.11120 (12)0.0716 (9)
H180.05390.04020.14050.086*
C19−0.0598 (3)−0.1044 (7)0.08383 (17)0.0976 (12)
H19−0.1357−0.08020.09500.117*
C20−0.0607 (5)−0.2105 (7)0.04053 (17)0.1034 (14)
H20−0.1371−0.25950.02240.124*
C210.0496 (5)−0.2446 (5)0.02384 (13)0.0921 (12)
H210.0482−0.3150−0.00600.111*
C220.1643 (3)−0.1750 (4)0.05112 (11)0.0680 (8)
H220.2398−0.19960.03970.082*
U11U22U33U12U13U23
F10.1048 (16)0.1189 (18)0.1105 (16)0.0546 (14)0.0040 (13)0.0346 (14)
S10.1037 (6)0.0484 (4)0.0428 (4)−0.0095 (4)0.0210 (4)0.0047 (3)
O10.0912 (15)0.0817 (15)0.0405 (10)0.0164 (12)−0.0058 (10)−0.0154 (10)
N10.0710 (14)0.0460 (12)0.0316 (10)0.0060 (11)0.0050 (10)−0.0024 (9)
N20.0605 (13)0.0358 (11)0.0379 (11)0.0003 (10)0.0055 (10)0.0029 (8)
C10.0627 (18)0.0552 (17)0.0482 (15)0.0041 (15)−0.0013 (13)0.0088 (13)
C20.075 (2)0.063 (2)0.0670 (19)0.0095 (17)0.0033 (16)0.0058 (15)
C30.064 (2)0.087 (2)0.072 (2)0.0230 (18)0.0127 (17)0.0279 (19)
C40.064 (2)0.121 (3)0.0510 (18)0.020 (2)−0.0025 (15)0.020 (2)
C50.0630 (18)0.099 (3)0.0424 (15)0.0080 (19)0.0008 (14)0.0019 (15)
C60.0500 (15)0.0624 (17)0.0360 (13)−0.0023 (14)0.0080 (11)0.0092 (12)
C70.0567 (16)0.0580 (17)0.0350 (13)−0.0042 (14)0.0027 (12)−0.0001 (12)
C80.0644 (17)0.0389 (14)0.0309 (12)−0.0067 (13)−0.0007 (12)−0.0060 (10)
C90.0685 (18)0.0413 (15)0.0468 (14)0.0062 (14)0.0038 (13)0.0037 (11)
C100.0657 (17)0.0346 (13)0.0452 (14)−0.0024 (13)0.0125 (13)0.0041 (11)
C110.072 (2)0.0539 (18)0.0614 (17)−0.0025 (15)0.0122 (15)−0.0097 (14)
C120.101 (3)0.065 (2)0.0594 (19)−0.012 (2)0.0029 (18)−0.0140 (16)
C130.143 (3)0.0475 (19)0.0521 (18)−0.005 (2)0.029 (2)−0.0051 (14)
C140.118 (3)0.0539 (19)0.074 (2)0.018 (2)0.051 (2)0.0056 (16)
C150.076 (2)0.0505 (17)0.0659 (18)0.0077 (16)0.0252 (16)0.0086 (14)
C160.0652 (17)0.0459 (15)0.0415 (13)0.0018 (13)0.0126 (12)0.0053 (11)
C170.0682 (18)0.0428 (15)0.0455 (14)−0.0060 (14)0.0114 (13)0.0071 (12)
C180.074 (2)0.078 (2)0.0655 (19)−0.0069 (18)0.0196 (17)0.0071 (16)
C190.067 (2)0.127 (4)0.098 (3)−0.021 (2)0.014 (2)0.022 (3)
C200.100 (3)0.116 (3)0.083 (3)−0.051 (3)−0.011 (2)0.022 (2)
C210.135 (4)0.074 (2)0.060 (2)−0.038 (3)0.001 (2)−0.0021 (17)
C220.092 (2)0.0541 (17)0.0564 (17)−0.0092 (17)0.0109 (16)−0.0003 (14)
F1—C31.360 (4)C10—C111.376 (4)
S1—C81.678 (3)C11—C121.375 (4)
O1—C71.213 (3)C11—H110.9300
N1—C71.385 (3)C12—C131.365 (5)
N1—C81.401 (3)C12—H120.9300
N1—H10.8600C13—C141.367 (5)
N2—C81.323 (3)C13—H130.9300
N2—C91.467 (3)C14—C151.391 (4)
N2—C161.475 (3)C14—H140.9300
C1—C21.378 (4)C15—H150.9300
C1—C61.383 (4)C16—C171.508 (4)
C1—H1A0.9300C16—H16A0.9700
C2—C31.361 (4)C16—H16B0.9700
C2—H20.9300C17—C181.372 (4)
C3—C41.360 (5)C17—C221.385 (4)
C4—C51.376 (4)C18—C191.383 (5)
C4—H40.9300C18—H180.9300
C5—C61.389 (4)C19—C201.364 (6)
C5—H50.9300C19—H190.9300
C6—C71.482 (4)C20—C211.356 (6)
C9—C101.507 (3)C20—H200.9300
C9—H9A0.9700C21—C221.386 (5)
C9—H9B0.9700C21—H210.9300
C10—C151.375 (4)C22—H220.9300
C7—N1—C8122.6 (2)C12—C11—C10121.2 (3)
C7—N1—H1118.7C12—C11—H11119.4
C8—N1—H1118.7C10—C11—H11119.4
C8—N2—C9122.0 (2)C13—C12—C11120.2 (3)
C8—N2—C16123.8 (2)C13—C12—H12119.9
C9—N2—C16113.9 (2)C11—C12—H12119.9
C2—C1—C6121.1 (3)C12—C13—C14119.6 (3)
C2—C1—H1A119.4C12—C13—H13120.2
C6—C1—H1A119.4C14—C13—H13120.2
C3—C2—C1118.2 (3)C13—C14—C15120.2 (3)
C3—C2—H2120.9C13—C14—H14119.9
C1—C2—H2120.9C15—C14—H14119.9
C4—C3—F1118.4 (3)C10—C15—C14120.4 (3)
C4—C3—C2123.0 (3)C10—C15—H15119.8
F1—C3—C2118.5 (3)C14—C15—H15119.8
C3—C4—C5118.3 (3)N2—C16—C17110.32 (19)
C3—C4—H4120.8N2—C16—H16A109.6
C5—C4—H4120.8C17—C16—H16A109.6
C4—C5—C6120.9 (3)N2—C16—H16B109.6
C4—C5—H5119.5C17—C16—H16B109.6
C6—C5—H5119.5H16A—C16—H16B108.1
C1—C6—C5118.4 (3)C18—C17—C22118.8 (3)
C1—C6—C7123.7 (2)C18—C17—C16121.1 (3)
C5—C6—C7117.8 (3)C22—C17—C16120.1 (3)
O1—C7—N1121.1 (2)C17—C18—C19120.5 (3)
O1—C7—C6122.2 (2)C17—C18—H18119.7
N1—C7—C6116.7 (2)C19—C18—H18119.7
N2—C8—N1116.7 (2)C20—C19—C18120.1 (4)
N2—C8—S1124.9 (2)C20—C19—H19120.0
N1—C8—S1118.3 (2)C18—C19—H19120.0
N2—C9—C10112.4 (2)C21—C20—C19120.2 (4)
N2—C9—H9A109.1C21—C20—H20119.9
C10—C9—H9A109.1C19—C20—H20119.9
N2—C9—H9B109.1C20—C21—C22120.3 (4)
C10—C9—H9B109.1C20—C21—H21119.8
H9A—C9—H9B107.8C22—C21—H21119.8
C15—C10—C11118.4 (3)C17—C22—C21120.0 (3)
C15—C10—C9120.1 (3)C17—C22—H22120.0
C11—C10—C9121.5 (3)C21—C22—H22120.0
D—H···AD—HH···AD···AD—H···A
C9—H9B···S10.972.553.076 (3)114
N1—H1···S1i0.862.613.422 (2)159
C1—H1A···S1i0.932.873.727 (3)154
C4—H4···O1ii0.932.503.322 (4)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯S1i0.862.613.422 (2)159
C1—H1A⋯S1i0.932.873.727 (3)154
C4—H4⋯O1ii0.932.503.322 (4)147

Symmetry codes: (i) ; (ii) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Methyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14

3.  Butyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-22

4.  Propyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-09

5.  2-Bromo-N-(dibenzyl-carbamothioyl)benzamide.

Authors:  Mohd Faizal Md Nasir; Ibrahim N Hassan; Wan Ramli Wan Daud; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

6.  Ethyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-09

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  2 in total

1.  (E)-2-(3-Cinnamoyl-thio-ureido)acetic acid dimethyl sulfoxide disolvate.

Authors:  Ibrahim N Hassan; Wan Ramli Wan Daud; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-17

2.  2,4-Di-chloro-N-[eth-yl(2-hy-droxy-eth-yl)carbamo-thio-yl]benzamide.

Authors:  Bohari M Yamin; Suhaila Sapari; Siti Aishah Hasbullah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-12-11
  2 in total

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