Literature DB >> 21588982

(E)-Ethyl 2-(3-cinnamoyl-thio-ureido)acetate.

Ibrahim N Hassan1, Bohari M Yamin, Mohammad B Kassim.   

Abstract

In the title compound, C(14)H(16)N(2)O(3)S, the phenyl ring and the ethyl 2-(3-formyl-thio-ureido)acetate fragment adopt an E configuration with respect to the C=C bond. An intra-molecular N-H⋯O hydrogen bond generating an S(6) ring motif is observed. In the crystal, mol-ecules are linked by N-H⋯S, C-H⋯S and C-H⋯O hydrogen bonds, forming sheets lying parallel to the ab plane.

Entities:  

Year:  2010        PMID: 21588982      PMCID: PMC3009106          DOI: 10.1107/S1600536810037918

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For related structures, see: Yamin & Hassan (2004 ▶); Hassan et al. (2008a ▶,b ▶,c ▶, 2009 ▶); Hung et al. (2010 ▶). For the synthesis, see: Hassan et al. (2008a ▶).

Experimental

Crystal data

C14H16N2O3S M = 292.35 Orthorhombic, a = 5.1867 (9) Å b = 9.7417 (16) Å c = 29.154 (5) Å V = 1473.1 (4) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 298 K 0.49 × 0.38 × 0.24 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.897, T max = 0.947 10938 measured reflections 3637 independent reflections 2747 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.063 wR(F 2) = 0.164 S = 1.03 3637 reflections 182 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 1497 Friedel pairs Flack parameter: −0.04 (13) Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810037918/ci5178sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810037918/ci5178Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H16N2O3SF(000) = 616
Mr = 292.35Dx = 1.318 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2524 reflections
a = 5.1867 (9) Åθ = 2.2–25.5°
b = 9.7417 (16) ŵ = 0.23 mm1
c = 29.154 (5) ÅT = 298 K
V = 1473.1 (4) Å3Block, colourless
Z = 40.49 × 0.38 × 0.24 mm
Bruker SMART APEX CCD area-detector diffractometer3637 independent reflections
Radiation source: fine-focus sealed tube2747 reflections with I > 2σ(I)
graphiteRint = 0.033
ω scanθmax = 28.3°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −6→6
Tmin = 0.897, Tmax = 0.947k = −12→13
10938 measured reflectionsl = −32→38
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.063H-atom parameters constrained
wR(F2) = 0.164w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.036
3637 reflectionsΔρmax = 0.35 e Å3
182 parametersΔρmin = −0.21 e Å3
0 restraintsAbsolute structure: Flack (1983), 1497 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.04 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.18635 (18)0.08578 (8)0.03548 (2)0.0573 (2)
O10.3380 (5)0.2635 (3)0.14456 (7)0.0694 (7)
O20.0044 (6)−0.0041 (3)0.20692 (9)0.0952 (10)
O3−0.3348 (5)−0.1415 (2)0.19707 (7)0.0712 (7)
N10.1857 (5)0.2377 (2)0.07184 (7)0.0446 (5)
H1A0.20470.26550.04400.053*
N2−0.0312 (5)0.0950 (2)0.12136 (8)0.0494 (6)
H2A0.06900.12850.14200.059*
C10.9341 (6)0.5968 (3)0.05420 (11)0.0540 (7)
H1B0.83790.55580.03100.065*
C21.1166 (7)0.6944 (3)0.04298 (12)0.0630 (9)
H2B1.14260.71820.01240.076*
C31.2592 (6)0.7563 (3)0.07652 (12)0.0635 (9)
H3A1.37880.82360.06890.076*
C41.2251 (7)0.7186 (3)0.12129 (13)0.0661 (9)
H4A1.32490.75930.14410.079*
C51.0440 (7)0.6208 (3)0.13305 (11)0.0581 (8)
H5A1.02340.59620.16370.070*
C60.8916 (5)0.5586 (3)0.09962 (10)0.0450 (6)
C70.7010 (6)0.4568 (3)0.11298 (10)0.0487 (6)
H7A0.69490.43350.14390.058*
C80.5352 (6)0.3939 (3)0.08554 (10)0.0451 (6)
H8A0.53720.41250.05430.054*
C90.3480 (6)0.2950 (3)0.10411 (9)0.0465 (6)
C10−0.0050 (6)0.1404 (3)0.07938 (10)0.0439 (6)
C11−0.2162 (6)−0.0072 (3)0.13555 (10)0.0514 (7)
H11A−0.2033−0.08690.11580.062*
H11B−0.38920.02970.13280.062*
C12−0.1669 (7)−0.0482 (3)0.18390 (11)0.0604 (8)
C13−0.3116 (12)−0.1938 (5)0.24386 (13)0.1039 (16)
H13A−0.1398−0.22990.24900.125*
H13B−0.3433−0.12100.26580.125*
C14−0.5011 (16)−0.3012 (7)0.24893 (19)0.165 (3)
H14A−0.4645−0.35340.27610.247*
H14B−0.4953−0.36060.22270.247*
H14C−0.6697−0.26120.25140.247*
U11U22U33U12U13U23
S10.0656 (5)0.0633 (4)0.0430 (4)−0.0139 (4)−0.0054 (4)−0.0001 (3)
O10.0813 (16)0.0836 (14)0.0431 (11)−0.0360 (15)−0.0067 (11)0.0109 (10)
O20.105 (2)0.113 (2)0.0677 (17)−0.049 (2)−0.0235 (16)0.0243 (17)
O30.0789 (16)0.0854 (15)0.0494 (12)−0.0338 (14)−0.0044 (12)0.0145 (11)
N10.0475 (12)0.0476 (11)0.0386 (11)−0.0068 (12)0.0019 (11)0.0020 (9)
N20.0518 (14)0.0541 (13)0.0422 (12)−0.0123 (12)−0.0024 (10)0.0020 (11)
C10.0510 (17)0.0602 (16)0.0509 (16)−0.0087 (15)−0.0081 (13)0.0023 (14)
C20.063 (2)0.0684 (18)0.0579 (19)−0.0092 (17)0.0024 (15)0.0120 (15)
C30.053 (2)0.0544 (16)0.084 (2)−0.0068 (15)0.0053 (16)−0.0015 (16)
C40.059 (2)0.0655 (19)0.073 (2)−0.0121 (16)−0.0086 (17)−0.0198 (17)
C50.0598 (19)0.0647 (19)0.0497 (17)−0.0059 (17)−0.0031 (14)−0.0092 (14)
C60.0396 (14)0.0439 (14)0.0513 (15)0.0033 (11)−0.0010 (12)−0.0043 (11)
C70.0519 (16)0.0515 (14)0.0427 (14)0.0005 (14)0.0013 (13)0.0001 (11)
C80.0464 (15)0.0455 (14)0.0433 (14)−0.0002 (13)−0.0003 (12)0.0017 (11)
C90.0473 (16)0.0472 (14)0.0449 (14)−0.0019 (13)−0.0044 (12)0.0012 (11)
C100.0431 (16)0.0393 (12)0.0492 (15)0.0014 (12)−0.0004 (12)−0.0028 (11)
C110.0502 (16)0.0538 (15)0.0503 (15)−0.0080 (14)−0.0016 (13)0.0065 (12)
C120.0631 (19)0.0642 (18)0.0538 (17)−0.0143 (18)0.0004 (17)0.0043 (13)
C130.124 (4)0.125 (3)0.062 (2)−0.041 (4)−0.012 (3)0.038 (2)
C140.184 (6)0.229 (8)0.083 (3)−0.108 (6)−0.038 (4)0.083 (4)
S1—C101.675 (3)C4—C51.381 (5)
O1—C91.219 (3)C4—H4A0.93
O2—C121.193 (4)C5—C61.393 (4)
O3—C121.316 (4)C5—H5A0.93
O3—C131.462 (4)C6—C71.453 (4)
N1—C91.380 (4)C7—C81.325 (4)
N1—C101.387 (4)C7—H7A0.93
N1—H1A0.86C8—C91.472 (4)
N2—C101.308 (4)C8—H8A0.93
N2—C111.443 (4)C11—C121.487 (4)
N2—H2A0.86C11—H11A0.97
C1—C21.381 (4)C11—H11B0.97
C1—C61.393 (4)C13—C141.443 (7)
C1—H1B0.93C13—H13A0.97
C2—C31.366 (5)C13—H13B0.97
C2—H2B0.93C14—H14A0.96
C3—C41.367 (5)C14—H14B0.96
C3—H3A0.93C14—H14C0.96
C12—O3—C13117.3 (3)C7—C8—H8A119.7
C9—N1—C10127.1 (2)C9—C8—H8A119.7
C9—N1—H1A116.5O1—C9—N1122.2 (3)
C10—N1—H1A116.5O1—C9—C8123.2 (3)
C10—N2—C11124.8 (2)N1—C9—C8114.6 (2)
C10—N2—H2A117.6N2—C10—N1117.0 (2)
C11—N2—H2A117.6N2—C10—S1123.3 (2)
C2—C1—C6121.2 (3)N1—C10—S1119.7 (2)
C2—C1—H1B119.4N2—C11—C12110.0 (3)
C6—C1—H1B119.4N2—C11—H11A109.6
C3—C2—C1120.3 (3)C12—C11—H11A109.6
C3—C2—H2B119.8N2—C11—H11B109.7
C1—C2—H2B119.8C12—C11—H11B109.7
C2—C3—C4119.7 (3)H11A—C11—H11B108.2
C2—C3—H3A120.2O2—C12—O3125.3 (3)
C4—C3—H3A120.2O2—C12—C11124.3 (3)
C3—C4—C5120.6 (3)O3—C12—C11110.4 (3)
C3—C4—H4A119.7C14—C13—O3107.0 (4)
C5—C4—H4A119.7C14—C13—H13A110.3
C4—C5—C6120.8 (3)O3—C13—H13A110.3
C4—C5—H5A119.6C14—C13—H13B110.3
C6—C5—H5A119.6O3—C13—H13B110.3
C5—C6—C1117.3 (3)H13A—C13—H13B108.6
C5—C6—C7119.7 (3)C13—C14—H14A109.5
C1—C6—C7123.0 (3)C13—C14—H14B109.5
C8—C7—C6126.5 (3)H14A—C14—H14B109.5
C8—C7—H7A116.7C13—C14—H14C109.5
C6—C7—H7A116.7H14A—C14—H14C109.5
C7—C8—C9120.6 (3)H14B—C14—H14C109.5
D—H···AD—HH···AD···AD—H···A
N1—H1A···S1i0.862.793.631 (2)166
N2—H2A···O10.861.922.611 (4)137
C4—H4A···O3ii0.932.543.457 (4)170
C8—H8A···S1i0.932.863.716 (3)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯S1i0.862.793.631 (2)166
N2—H2A⋯O10.861.922.611 (4)137
C4—H4A⋯O3ii0.932.543.457 (4)170
C8—H8A⋯S1i0.932.863.716 (3)153

Symmetry codes: (i) ; (ii) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Methyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14

3.  Butyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-22

4.  Propyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-09

5.  1,1'-Diphenyl-3,3'-(p-phenyl-enedicarbon-yl)dithio-urea.

Authors:  Wong W Hung; Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-09

6.  Ethyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-09

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  2 in total

1.  Cinnamoyl-thio-urea.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-13

2.  (E)-2-(3-Cinnamoyl-thio-ureido)acetic acid dimethyl sulfoxide disolvate.

Authors:  Ibrahim N Hassan; Wan Ramli Wan Daud; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-17
  2 in total

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