Literature DB >> 21579772

N,N'-Dicyclo-hexyl-N''-(4-nitro-benzo-yl)phospho-ric triamide.

Fahimeh Sabbaghi, Mehrdad Pourayoubi, Maryam Toghraee, Vladimir Divjakovic.   

Abstract

The P atom in the title compound, C(19)H(29)N(4)O(4)P, exhibits a tetra-hedral coordination and the phosphoryl and carbonyl groups are anti to each other. Adjacent mol-ecules are linked by N-H⋯O hydrogen bonds to form a layer motif.

Entities:  

Year:  2010        PMID: 21579772      PMCID: PMC2979854          DOI: 10.1107/S1600536810000851

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a phosphate compound containing the C(O)NHP(O) unit, see: Pourayoubi & Sabbaghi (2007 ▶). For phosphoric triamide, see: Pourayoubi & Sabbaghi (2009 ▶).

Experimental

Crystal data

C19H29N4O4P M = 408.43 Triclinic, a = 10.4091 (7) Å b = 10.8527 (9) Å c = 11.1116 (10) Å α = 99.764 (7)° β = 110.881 (7)° γ = 108.158 (7)° V = 1057.25 (18) Å3 Z = 2 Mo Kα radiation μ = 0.16 mm−1 T = 295 K 0.52 × 0.31 × 0.29 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Sapphire3 (Gemini Mo) detector 6746 measured reflections 3713 independent reflections 2915 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.115 S = 1.11 3713 reflections 254 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.37 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810000851/ng2716sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810000851/ng2716Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H29N4O4PZ = 2
Mr = 408.43F(000) = 436
Triclinic, P1Dx = 1.283 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 10.4091 (7) ÅCell parameters from 4113 reflections
b = 10.8527 (9) Åθ = 3.3–29.2°
c = 11.1116 (10) ŵ = 0.16 mm1
α = 99.764 (7)°T = 295 K
β = 110.881 (7)°Prism, colorles
γ = 108.158 (7)°0.52 × 0.31 × 0.28 mm
V = 1057.25 (18) Å3
Oxford Diffraction Xcalibur diffractometer with a Sapphire3 (Gemini Mo) detector2915 reflections with I > 2σ(I)
Radiation source: Enhance (Mo) X-ray SourceRint = 0.016
graphiteθmax = 25.0°, θmin = 3.3°
Detector resolution: 16.3280 pixels mm-1h = −12→12
ω scansk = −12→11
6746 measured reflectionsl = −11→13
3713 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.115w = 1/[σ2(Fo2) + (0.068P)2] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max = 0.001
3713 reflectionsΔρmax = 0.38 e Å3
254 parametersΔρmin = −0.37 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.015 (3)
Experimental. #__ type_ start__ end____ width___ exp.time_ 1 omega -7.00 53.00 1.0000 3.6500 omega____ theta____ kappa____ phi______ frames - 21.1985 77.0000 150.0000 60#__ type_ start__ end____ width___ exp.time_ 2 omega -4.00 91.00 1.0000 3.6500 omega____ theta____ kappa____ phi______ frames - 21.1985 77.0000 30.0000 95#__ type_ start__ end____ width___ exp.time_ 3 omega -51.00 47.00 1.0000 3.6500 omega____ theta____ kappa____ phi______ frames - 21.1985 - 37.0000 240.0000 98#__ type_ start__ end____ width___ exp.time_ 4 omega -51.00 34.00 1.0000 3.6500 omega____ theta____ kappa____ phi______ frames - 21.1985 - 37.0000 150.0000 85#__ type_ start__ end____ width___ exp.time_ 5 omega -6.00 33.00 1.0000 3.6500 omega____ theta____ kappa____ phi______ frames - 21.1985 77.0000 270.0000 39
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P0.69819 (5)0.43097 (5)0.04401 (5)0.03153 (17)
O10.59696 (13)0.43337 (14)0.10845 (13)0.0427 (3)
O20.86256 (14)0.52969 (15)−0.11240 (13)0.0494 (4)
O30.6421 (2)0.7685 (2)−0.64611 (17)0.0824 (6)
O40.4469 (2)0.7627 (2)−0.62270 (19)0.0973 (7)
N10.67651 (16)0.28654 (15)−0.04742 (16)0.0416 (4)
H10.61030.2583−0.13050.050*
N20.87293 (15)0.49971 (15)0.15558 (14)0.0337 (4)
H20.93360.46610.14310.040*
N30.66090 (15)0.51363 (15)−0.07230 (14)0.0329 (4)
H30.58440.5345−0.08980.039*
N40.5646 (2)0.74999 (18)−0.58613 (18)0.0558 (5)
C110.7533 (2)0.19656 (18)−0.00942 (18)0.0385 (4)
H110.86160.25000.02630.046*
C120.7254 (3)0.1419 (2)0.0981 (2)0.0670 (7)
H12A0.61810.09400.06750.080*
H12B0.76350.21720.17990.080*
C130.8027 (4)0.0438 (3)0.1304 (3)0.0905 (10)
H13A0.91080.09450.17200.109*
H13B0.77650.00440.19490.109*
C140.7562 (3)−0.0698 (2)0.0036 (3)0.0779 (8)
H14A0.8118−0.12620.02630.093*
H14B0.6500−0.1271−0.03240.093*
C150.7858 (3)−0.0128 (3)−0.1009 (3)0.0711 (7)
H15A0.7513−0.0870−0.18250.085*
H15B0.89310.0377−0.06780.085*
C160.7059 (3)0.0814 (2)−0.1346 (2)0.0537 (6)
H16A0.72900.1189−0.20120.064*
H16B0.59810.0292−0.17390.064*
C210.9318 (2)0.61724 (18)0.27734 (18)0.0372 (4)
H210.85430.60580.31010.045*
C220.9661 (3)0.7503 (2)0.2469 (2)0.0772 (8)
H22A0.87380.74970.18230.093*
H22B1.03440.75860.20510.093*
C231.0354 (4)0.8726 (3)0.3722 (3)0.0995 (10)
H23A1.06170.95570.34790.119*
H23B0.96250.87080.40780.119*
C241.1732 (3)0.8739 (3)0.4796 (3)0.0952 (11)
H24A1.21180.95050.56050.114*
H24B1.25030.88530.44770.114*
C251.1371 (3)0.7418 (3)0.5140 (2)0.0760 (8)
H25A1.06720.73500.55400.091*
H25B1.22840.74260.58030.091*
C261.0679 (2)0.6172 (2)0.3871 (2)0.0556 (6)
H26A1.14220.61820.35330.067*
H26B1.03950.53420.41100.067*
C300.74698 (18)0.54829 (18)−0.13909 (17)0.0333 (4)
C310.69513 (18)0.60806 (17)−0.25097 (17)0.0314 (4)
C320.79254 (19)0.65206 (19)−0.30874 (19)0.0399 (5)
H320.88650.6487−0.27390.048*
C330.7513 (2)0.7005 (2)−0.41680 (19)0.0434 (5)
H330.81630.7296−0.45560.052*
C340.6122 (2)0.70486 (19)−0.46623 (17)0.0396 (5)
C350.5142 (2)0.6639 (2)−0.41019 (19)0.0426 (5)
H350.42100.6688−0.44490.051*
C360.55611 (19)0.61538 (19)−0.30166 (18)0.0387 (4)
H360.49110.5876−0.26250.046*
U11U22U33U12U13U23
P0.0300 (3)0.0420 (3)0.0339 (3)0.0222 (2)0.0166 (2)0.0181 (2)
O10.0394 (7)0.0653 (9)0.0482 (8)0.0331 (6)0.0286 (6)0.0328 (7)
O20.0414 (7)0.0855 (11)0.0506 (8)0.0435 (7)0.0294 (7)0.0358 (8)
O30.0942 (13)0.1094 (15)0.0620 (11)0.0376 (11)0.0452 (11)0.0528 (11)
O40.0850 (13)0.159 (2)0.0865 (13)0.0732 (13)0.0370 (11)0.0858 (14)
N10.0420 (8)0.0447 (9)0.0346 (8)0.0248 (7)0.0071 (7)0.0117 (7)
N20.0320 (8)0.0443 (9)0.0326 (8)0.0249 (7)0.0149 (7)0.0108 (7)
N30.0298 (7)0.0472 (9)0.0370 (8)0.0261 (7)0.0186 (7)0.0207 (7)
N40.0583 (11)0.0567 (12)0.0434 (10)0.0178 (9)0.0139 (9)0.0231 (9)
C110.0371 (9)0.0358 (10)0.0421 (10)0.0194 (8)0.0116 (9)0.0146 (9)
C120.1058 (19)0.0580 (14)0.0472 (13)0.0402 (14)0.0349 (13)0.0232 (12)
C130.140 (3)0.0675 (17)0.0624 (16)0.0553 (17)0.0237 (17)0.0380 (15)
C140.0989 (19)0.0490 (14)0.0778 (17)0.0416 (14)0.0189 (16)0.0225 (14)
C150.0883 (18)0.0575 (15)0.0794 (17)0.0467 (14)0.0356 (15)0.0188 (14)
C160.0703 (14)0.0544 (13)0.0483 (12)0.0356 (11)0.0280 (11)0.0199 (11)
C210.0390 (10)0.0445 (11)0.0358 (10)0.0222 (8)0.0204 (8)0.0114 (9)
C220.115 (2)0.0475 (14)0.0572 (15)0.0301 (14)0.0266 (15)0.0183 (12)
C230.140 (3)0.0415 (15)0.088 (2)0.0229 (16)0.036 (2)0.0070 (15)
C240.090 (2)0.069 (2)0.083 (2)−0.0029 (16)0.0424 (18)−0.0226 (17)
C250.0643 (15)0.105 (2)0.0405 (13)0.0401 (15)0.0111 (12)−0.0041 (14)
C260.0570 (13)0.0683 (15)0.0364 (11)0.0329 (11)0.0125 (10)0.0075 (11)
C300.0309 (9)0.0421 (10)0.0314 (9)0.0196 (8)0.0145 (8)0.0107 (8)
C310.0305 (9)0.0338 (9)0.0306 (9)0.0141 (7)0.0142 (8)0.0081 (8)
C320.0320 (9)0.0478 (11)0.0426 (11)0.0169 (8)0.0175 (8)0.0168 (9)
C330.0419 (10)0.0517 (12)0.0413 (11)0.0162 (9)0.0235 (9)0.0187 (10)
C340.0466 (11)0.0377 (10)0.0287 (9)0.0137 (8)0.0124 (9)0.0120 (8)
C350.0360 (10)0.0548 (12)0.0412 (11)0.0238 (9)0.0141 (9)0.0209 (10)
C360.0351 (9)0.0524 (12)0.0390 (10)0.0224 (9)0.0204 (9)0.0205 (9)
P—O11.4739 (13)C16—H16B0.9700
P—N11.6174 (16)C21—C221.502 (3)
P—N21.6233 (14)C21—C261.505 (3)
P—N31.6966 (14)C21—H210.9800
O2—C301.222 (2)C22—C231.510 (3)
O3—N41.210 (2)C22—H22A0.9700
O4—N41.206 (2)C22—H22B0.9700
N1—C111.468 (2)C23—C241.498 (4)
N1—H10.8600C23—H23A0.9700
N2—C211.473 (2)C23—H23B0.9700
N2—H20.8600C24—C251.514 (4)
N3—C301.362 (2)C24—H24A0.9700
N3—H30.8600C24—H24B0.9700
N4—C341.471 (2)C25—C261.536 (3)
C11—C121.498 (3)C25—H25A0.9700
C11—C161.509 (3)C25—H25B0.9700
C11—H110.9800C26—H26A0.9700
C12—C131.538 (3)C26—H26B0.9700
C12—H12A0.9700C30—C311.507 (2)
C12—H12B0.9700C31—C361.387 (2)
C13—C141.514 (4)C31—C321.391 (2)
C13—H13A0.9700C32—C331.374 (3)
C13—H13B0.9700C32—H320.9300
C14—C151.485 (4)C33—C341.373 (3)
C14—H14A0.9700C33—H330.9300
C14—H14B0.9700C34—C351.375 (3)
C15—C161.521 (3)C35—C361.380 (3)
C15—H15A0.9700C35—H350.9300
C15—H15B0.9700C36—H360.9300
C16—H16A0.9700
O1—P—N1119.46 (8)C22—C21—C26111.50 (17)
O1—P—N2111.42 (7)N2—C21—H21107.9
N1—P—N2105.05 (8)C22—C21—H21107.9
O1—P—N3105.89 (7)C26—C21—H21107.9
N1—P—N3101.89 (8)C21—C22—C23112.7 (2)
N2—P—N3112.93 (7)C21—C22—H22A109.0
C11—N1—P129.49 (13)C23—C22—H22A109.0
C11—N1—H1115.3C21—C22—H22B109.0
P—N1—H1115.3C23—C22—H22B109.0
C21—N2—P122.67 (11)H22A—C22—H22B107.8
C21—N2—H2118.7C24—C23—C22111.5 (3)
P—N2—H2118.7C24—C23—H23A109.3
C30—N3—P122.74 (11)C22—C23—H23A109.3
C30—N3—H3118.6C24—C23—H23B109.3
P—N3—H3118.6C22—C23—H23B109.3
O4—N4—O3122.9 (2)H23A—C23—H23B108.0
O4—N4—C34118.1 (2)C23—C24—C25110.5 (2)
O3—N4—C34118.90 (19)C23—C24—H24A109.6
N1—C11—C12112.89 (17)C25—C24—H24A109.6
N1—C11—C16109.24 (15)C23—C24—H24B109.6
C12—C11—C16110.75 (16)C25—C24—H24B109.6
N1—C11—H11107.9H24A—C24—H24B108.1
C12—C11—H11107.9C24—C25—C26111.3 (2)
C16—C11—H11107.9C24—C25—H25A109.4
C11—C12—C13111.0 (2)C26—C25—H25A109.4
C11—C12—H12A109.4C24—C25—H25B109.4
C13—C12—H12A109.4C26—C25—H25B109.4
C11—C12—H12B109.4H25A—C25—H25B108.0
C13—C12—H12B109.4C21—C26—C25111.20 (18)
H12A—C12—H12B108.0C21—C26—H26A109.4
C14—C13—C12111.5 (2)C25—C26—H26A109.4
C14—C13—H13A109.3C21—C26—H26B109.4
C12—C13—H13A109.3C25—C26—H26B109.4
C14—C13—H13B109.3H26A—C26—H26B108.0
C12—C13—H13B109.3O2—C30—N3121.79 (16)
H13A—C13—H13B108.0O2—C30—C31119.65 (16)
C15—C14—C13110.7 (2)N3—C30—C31118.55 (14)
C15—C14—H14A109.5C36—C31—C32119.53 (17)
C13—C14—H14A109.5C36—C31—C30123.97 (16)
C15—C14—H14B109.5C32—C31—C30116.44 (15)
C13—C14—H14B109.5C33—C32—C31120.64 (17)
H14A—C14—H14B108.1C33—C32—H32119.7
C14—C15—C16111.0 (2)C31—C32—H32119.7
C14—C15—H15A109.4C34—C33—C32118.64 (18)
C16—C15—H15A109.4C34—C33—H33120.7
C14—C15—H15B109.4C32—C33—H33120.7
C16—C15—H15B109.4C33—C34—C35122.12 (17)
H15A—C15—H15B108.0C33—C34—N4118.82 (18)
C11—C16—C15111.21 (18)C35—C34—N4119.03 (17)
C11—C16—H16A109.4C34—C35—C36119.04 (17)
C15—C16—H16A109.4C34—C35—H35120.5
C11—C16—H16B109.4C36—C35—H35120.5
C15—C16—H16B109.4C35—C36—C31120.01 (17)
H16A—C16—H16B108.0C35—C36—H36120.0
N2—C21—C22112.00 (16)C31—C36—H36120.0
N2—C21—C26109.51 (15)
O1—P—N1—C11−95.68 (17)C23—C24—C25—C2656.3 (3)
N2—P—N1—C1130.22 (19)N2—C21—C26—C25177.50 (18)
N3—P—N1—C11148.19 (16)C22—C21—C26—C2553.0 (3)
O1—P—N2—C21−35.25 (16)C24—C25—C26—C21−55.1 (3)
N1—P—N2—C21−166.00 (13)P—N3—C30—O2−4.9 (2)
N3—P—N2—C2183.79 (15)P—N3—C30—C31173.61 (12)
O1—P—N3—C30170.69 (13)O2—C30—C31—C36170.60 (17)
N1—P—N3—C30−63.67 (15)N3—C30—C31—C36−8.0 (3)
N2—P—N3—C3048.50 (15)O2—C30—C31—C32−6.5 (2)
P—N1—C11—C1262.5 (2)N3—C30—C31—C32174.97 (15)
P—N1—C11—C16−173.78 (14)C36—C31—C32—C33−1.1 (3)
N1—C11—C12—C13177.69 (19)C30—C31—C32—C33176.11 (16)
C16—C11—C12—C1354.8 (3)C31—C32—C33—C340.2 (3)
C11—C12—C13—C14−54.6 (3)C32—C33—C34—C350.7 (3)
C12—C13—C14—C1555.3 (3)C32—C33—C34—N4−176.94 (17)
C13—C14—C15—C16−56.7 (3)O4—N4—C34—C33−174.8 (2)
N1—C11—C16—C15178.52 (19)O3—N4—C34—C337.5 (3)
C12—C11—C16—C15−56.5 (3)O4—N4—C34—C357.5 (3)
C14—C15—C16—C1157.7 (3)O3—N4—C34—C35−170.23 (19)
P—N2—C21—C22−81.3 (2)C33—C34—C35—C36−0.7 (3)
P—N2—C21—C26154.44 (15)N4—C34—C35—C36176.95 (17)
N2—C21—C22—C23−176.5 (2)C34—C35—C36—C31−0.2 (3)
C26—C21—C22—C23−53.4 (3)C32—C31—C36—C351.1 (3)
C21—C22—C23—C2455.0 (4)C30—C31—C36—C35−175.88 (17)
C22—C23—C24—C25−55.9 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O4i0.862.543.305 (2)148
N2—H2···O2ii0.862.253.0578 (18)156
N3—H3···O1iii0.861.972.8229 (18)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O4i0.862.543.305 (2)148
N2—H2⋯O2ii0.862.253.0578 (18)156
N3—H3⋯O1iii0.861.972.8229 (18)170

Symmetry codes: (i) ; (ii) ; (iii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  9 in total

1.  N,N'-Dibenzyl-N''-(2,6-difluoro-benzo-yl)-N,N'-dimethyl-phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-11

2.  N,N'-Dicyclo-hexyl-N,N'-dimethyl-N''-(4-nitro-benzo-yl)phospho-ric triamide.

Authors:  Fahimeh Sabbaghi; Mahnaz Rostami Chaijan; Mehrdad Pourayoubi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-23

3.  N,N'-Dibenzyl-N''-(2-chloro-2,2-difluoro-acet-yl)-N,N'-dimethyl-phospho-ric triamide.

Authors:  Akbar Raissi Shabari; Mehrdad Pourayoubi; Anahid Saneei
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-19

4.  N,N'-Dibenzyl-N,N'-dimethyl-N''-(4-nitro-benzo-yl)phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Mahnaz Rostami Chaijan; Laura Torre-Fernández; Santiago García-Granda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-07

5.  N,N'-Dicyclo-hexyl-N'',N''-dimethyl-phospho-ric triamide.

Authors:  Fahimeh Sabbaghi; Mehrdad Pourayoubi; Fatemeh Karimi Ahmadabad; Zahra Azarkamanzad; Ali Asghar Ebrahimi Valmoozi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-26

6.  N-Benzoyl-N',N''-dicyclo-hexyl-phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Mahnaz Rostami Chaijan; Laura Torre-Fernández; Santiago García-Granda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-07

7.  N-(2-Fluoro-benzo-yl)-N',N''-bis-(4-methyl-phen-yl)phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-19

8.  N,N'-Bis(2-chloro-benz-yl)-N''-(dichloro-acet-yl)phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Maryam Toghraee; Vladimir Divjakovic
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-12

9.  N-(2,6-Difluoro-benzo-yl)-P,P-bis-(pyrrolidin-1-yl)phosphinic amide.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27
  9 in total

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