Literature DB >> 21587970

N,N'-Dicyclo-hexyl-N,N'-dimethyl-N''-(4-nitro-benzo-yl)phospho-ric triamide.

Fahimeh Sabbaghi, Mahnaz Rostami Chaijan, Mehrdad Pourayoubi.   

Abstract

The P atom in the title compound, C(21)H(33)N(4)O(4)P, is in a slightly distorted tetra-hedral coordination environment and the phosphoryl and carbonyl groups are anti to each other. The environment of each N atom is essentially planar (average angles of 119.9 and 118.4°). In the crystal structure, the H atom of the C(=O)NHP(=O) group is involved in an inter-molecular -P=O⋯H-N- hydrogen bond, forming centrosymmetric dimers.

Entities:  

Year:  2010        PMID: 21587970      PMCID: PMC3006933          DOI: 10.1107/S1600536810023524

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of compounds containing the –C(=O)NHP(=O)– skeleton, see: Gholivand et al. (2010 ▶). For related structures, see: Pourayoubi & Sabbaghi (2009 ▶); Sabbaghi et al. (2010 ▶).

Experimental

Crystal data

C21H33N4O4P M = 436.48 Triclinic, a = 8.6118 (16) Å b = 10.838 (2) Å c = 12.711 (2) Å α = 93.089 (4)° β = 106.792 (4)° γ = 95.105 (3)° V = 1127.4 (4) Å3 Z = 2 Mo Kα radiation μ = 0.16 mm−1 T = 120 K 0.40 × 0.20 × 0.20 mm

Data collection

Bruker SMART 1000 CCD area detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1998 ▶) T min = 0.959, T max = 0.969 12417 measured reflections 5955 independent reflections 4603 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.103 S = 1.00 5955 reflections 273 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.43 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810023524/lh5061sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810023524/lh5061Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H33N4O4PZ = 2
Mr = 436.48F(000) = 468
Triclinic, P1Dx = 1.286 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.6118 (16) ÅCell parameters from 2045 reflections
b = 10.838 (2) Åθ = 2–25°
c = 12.711 (2) ŵ = 0.16 mm1
α = 93.089 (4)°T = 120 K
β = 106.792 (4)°Prism, colorless
γ = 95.105 (3)°0.40 × 0.20 × 0.20 mm
V = 1127.4 (4) Å3
Bruker SMART 1000 CCD area detector diffractometer5955 independent reflections
Radiation source: fine-focus sealed tube4603 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 29.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1998)h = −11→11
Tmin = 0.959, Tmax = 0.969k = −14→14
12417 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: mixed
wR(F2) = 0.103H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.001P)2 + 1.3P] where P = (Fo2 + 2Fc2)/3
5955 reflections(Δ/σ)max = 0.001
273 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.43 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.45851 (5)0.82031 (4)0.58020 (3)0.02026 (10)
O10.48700 (15)0.85007 (11)0.47427 (9)0.0235 (3)
O20.37428 (15)0.88786 (11)0.78908 (10)0.0269 (3)
O30.60736 (19)1.44437 (13)1.10559 (11)0.0390 (3)
O40.7761 (2)1.49349 (14)1.01319 (12)0.0453 (4)
N10.47053 (17)0.95776 (12)0.65239 (11)0.0199 (3)
H1N0.49651.02180.62110.024*
N20.6661 (2)1.42572 (14)1.02941 (12)0.0305 (3)
N30.28286 (18)0.73684 (13)0.55664 (11)0.0240 (3)
N40.59191 (18)0.74205 (13)0.66231 (12)0.0247 (3)
C10.43680 (19)0.97284 (15)0.75065 (13)0.0200 (3)
C20.48973 (19)1.09818 (15)0.81576 (13)0.0197 (3)
C30.5913 (2)1.19046 (16)0.78890 (14)0.0246 (3)
H3A0.62191.17940.72320.030*
C40.6481 (2)1.29926 (16)0.85839 (14)0.0263 (4)
H4A0.71821.36260.84130.032*
C50.5999 (2)1.31276 (15)0.95283 (13)0.0232 (3)
C60.4977 (2)1.22431 (16)0.98073 (14)0.0244 (3)
H6A0.46531.23691.04550.029*
C70.4429 (2)1.11573 (16)0.91131 (13)0.0229 (3)
H7A0.37291.05280.92920.027*
C80.2412 (2)0.65393 (18)0.63379 (15)0.0335 (4)
H8A0.19060.57350.59430.050*
H8B0.16460.69090.66680.050*
H8C0.34050.64180.69200.050*
C90.1508 (2)0.75515 (15)0.45520 (13)0.0217 (3)
H9A0.19090.82810.42170.026*
C10−0.0048 (2)0.78658 (18)0.47985 (15)0.0306 (4)
H10A0.02000.86210.53180.037*
H10B−0.04640.71740.51560.037*
C11−0.1361 (2)0.80878 (19)0.37426 (16)0.0342 (4)
H11A−0.23790.82350.39200.041*
H11B−0.09950.88390.34300.041*
C12−0.1699 (2)0.69742 (19)0.28905 (17)0.0382 (5)
H12A−0.21740.62430.31720.046*
H12B−0.25040.71600.22020.046*
C13−0.0139 (3)0.6671 (2)0.26434 (16)0.0393 (5)
H13A0.02800.73710.22960.047*
H13B−0.03820.59230.21160.047*
C140.1171 (2)0.64358 (17)0.37005 (15)0.0297 (4)
H14A0.07980.56850.40100.036*
H14B0.21890.62850.35250.036*
C150.6164 (3)0.62277 (18)0.61104 (17)0.0404 (5)
H15A0.60890.55680.65970.061*
H15B0.72430.62940.59930.061*
H15C0.53210.60290.54000.061*
C160.7269 (2)0.79996 (16)0.75819 (13)0.0226 (3)
H16A0.67970.86080.79890.027*
C170.7955 (2)0.70390 (17)0.83827 (14)0.0279 (4)
H17A0.84550.64250.80160.034*
H17B0.70590.65900.86010.034*
C180.9245 (2)0.76902 (19)0.94149 (15)0.0329 (4)
H18A0.87180.82480.98160.040*
H18B0.97140.70590.99130.040*
C191.0606 (2)0.8443 (2)0.91066 (16)0.0363 (5)
H19A1.12120.78740.87800.044*
H19B1.13800.88910.97800.044*
C200.9923 (2)0.9376 (2)0.82845 (17)0.0361 (5)
H20A1.08220.98150.80630.043*
H20B0.94241.00030.86400.043*
C210.8637 (2)0.87251 (19)0.72583 (15)0.0306 (4)
H21A0.81790.93520.67520.037*
H21B0.91560.81500.68660.037*
U11U22U33U12U13U23
P10.0236 (2)0.0180 (2)0.01684 (19)0.00119 (16)0.00277 (16)0.00079 (15)
O10.0288 (6)0.0206 (6)0.0198 (6)0.0005 (5)0.0062 (5)−0.0009 (4)
O20.0322 (7)0.0247 (6)0.0249 (6)0.0000 (5)0.0108 (5)0.0037 (5)
O30.0589 (10)0.0343 (8)0.0216 (6)0.0068 (7)0.0091 (6)−0.0052 (5)
O40.0593 (10)0.0356 (8)0.0337 (8)−0.0152 (7)0.0101 (7)−0.0085 (6)
N10.0244 (7)0.0173 (6)0.0174 (6)0.0013 (5)0.0058 (5)0.0014 (5)
N20.0421 (9)0.0260 (8)0.0192 (7)0.0045 (7)0.0025 (7)−0.0004 (6)
N30.0262 (7)0.0240 (7)0.0177 (7)−0.0025 (6)0.0004 (6)0.0062 (5)
N40.0282 (8)0.0191 (7)0.0223 (7)0.0061 (6)−0.0002 (6)−0.0017 (5)
C10.0182 (7)0.0223 (8)0.0181 (7)0.0043 (6)0.0023 (6)0.0028 (6)
C20.0193 (8)0.0213 (8)0.0172 (7)0.0047 (6)0.0028 (6)0.0011 (6)
C30.0277 (9)0.0273 (9)0.0186 (8)−0.0001 (7)0.0075 (7)0.0002 (6)
C40.0310 (9)0.0256 (9)0.0203 (8)−0.0020 (7)0.0058 (7)0.0010 (7)
C50.0274 (9)0.0218 (8)0.0164 (7)0.0046 (7)0.0001 (6)−0.0009 (6)
C60.0280 (9)0.0282 (9)0.0176 (8)0.0082 (7)0.0063 (7)0.0025 (6)
C70.0243 (8)0.0246 (8)0.0199 (8)0.0042 (7)0.0061 (6)0.0033 (6)
C80.0365 (10)0.0313 (10)0.0265 (9)−0.0097 (8)0.0021 (8)0.0110 (7)
C90.0236 (8)0.0219 (8)0.0166 (7)0.0012 (6)0.0014 (6)0.0028 (6)
C100.0325 (10)0.0333 (10)0.0259 (9)0.0075 (8)0.0077 (8)0.0015 (7)
C110.0286 (10)0.0361 (10)0.0372 (11)0.0117 (8)0.0058 (8)0.0063 (8)
C120.0287 (10)0.0354 (11)0.0394 (11)0.0051 (8)−0.0076 (8)0.0013 (9)
C130.0389 (11)0.0436 (12)0.0246 (9)0.0118 (9)−0.0075 (8)−0.0085 (8)
C140.0275 (9)0.0305 (9)0.0250 (9)0.0079 (7)−0.0021 (7)−0.0045 (7)
C150.0504 (13)0.0275 (10)0.0350 (11)0.0144 (9)−0.0020 (9)−0.0058 (8)
C160.0219 (8)0.0252 (8)0.0189 (8)0.0050 (6)0.0024 (6)0.0005 (6)
C170.0269 (9)0.0315 (9)0.0246 (9)0.0057 (7)0.0048 (7)0.0068 (7)
C180.0291 (10)0.0429 (11)0.0238 (9)0.0041 (8)0.0019 (7)0.0091 (8)
C190.0229 (9)0.0521 (13)0.0301 (10)0.0038 (8)0.0011 (8)0.0071 (9)
C200.0248 (9)0.0440 (12)0.0354 (10)−0.0041 (8)0.0039 (8)0.0093 (9)
C210.0274 (9)0.0392 (10)0.0259 (9)0.0048 (8)0.0074 (7)0.0100 (8)
P1—O11.4834 (13)C10—H10B0.9900
P1—N31.6315 (15)C11—C121.526 (3)
P1—N41.6446 (15)C11—H11A0.9900
P1—N11.6859 (14)C11—H11B0.9900
O2—C11.220 (2)C12—C131.524 (3)
O3—N21.231 (2)C12—H12A0.9900
O4—N21.219 (2)C12—H12B0.9900
N1—C11.366 (2)C13—C141.534 (2)
N1—H1N0.8628C13—H13A0.9900
N2—C51.483 (2)C13—H13B0.9900
N3—C81.462 (2)C14—H14A0.9900
N3—C91.489 (2)C14—H14B0.9900
N4—C151.476 (2)C15—H15A0.9800
N4—C161.483 (2)C15—H15B0.9800
C1—C21.513 (2)C15—H15C0.9800
C2—C31.391 (2)C16—C211.525 (2)
C2—C71.395 (2)C16—C171.531 (2)
C3—C41.395 (2)C16—H16A1.0000
C3—H3A0.9500C17—C181.540 (3)
C4—C51.383 (2)C17—H17A0.9900
C4—H4A0.9500C17—H17B0.9900
C5—C61.374 (2)C18—C191.524 (3)
C6—C71.391 (2)C18—H18A0.9900
C6—H6A0.9500C18—H18B0.9900
C7—H7A0.9500C19—C201.525 (3)
C8—H8A0.9800C19—H19A0.9900
C8—H8B0.9800C19—H19B0.9900
C8—H8C0.9800C20—C211.534 (3)
C9—C101.523 (2)C20—H20A0.9900
C9—C141.527 (2)C20—H20B0.9900
C9—H9A1.0000C21—H21A0.9900
C10—C111.531 (3)C21—H21B0.9900
C10—H10A0.9900
O1—P1—N3109.91 (7)H11A—C11—H11B108.0
O1—P1—N4117.28 (8)C13—C12—C11111.06 (16)
N3—P1—N4105.39 (8)C13—C12—H12A109.4
O1—P1—N1106.20 (7)C11—C12—H12A109.4
N3—P1—N1113.38 (8)C13—C12—H12B109.4
N4—P1—N1104.81 (7)C11—C12—H12B109.4
C1—N1—P1125.20 (12)H12A—C12—H12B108.0
C1—N1—H1N120.1C12—C13—C14111.07 (17)
P1—N1—H1N114.6C12—C13—H13A109.4
O4—N2—O3124.33 (16)C14—C13—H13A109.4
O4—N2—C5117.72 (15)C12—C13—H13B109.4
O3—N2—C5117.95 (16)C14—C13—H13B109.4
C8—N3—C9117.46 (14)H13A—C13—H13B108.0
C8—N3—P1124.25 (12)C9—C14—C13110.50 (15)
C9—N3—P1118.02 (11)C9—C14—H14A109.5
C15—N4—C16116.81 (14)C13—C14—H14A109.5
C15—N4—P1114.39 (12)C9—C14—H14B109.5
C16—N4—P1124.01 (11)C13—C14—H14B109.5
O2—C1—N1122.38 (15)H14A—C14—H14B108.1
O2—C1—C2119.89 (15)N4—C15—H15A109.5
N1—C1—C2117.61 (14)N4—C15—H15B109.5
C3—C2—C7119.80 (15)H15A—C15—H15B109.5
C3—C2—C1122.95 (15)N4—C15—H15C109.5
C7—C2—C1117.06 (15)H15A—C15—H15C109.5
C2—C3—C4119.99 (16)H15B—C15—H15C109.5
C2—C3—H3A120.0N4—C16—C21113.46 (14)
C4—C3—H3A120.0N4—C16—C17111.50 (14)
C5—C4—C3118.47 (16)C21—C16—C17110.48 (14)
C5—C4—H4A120.8N4—C16—H16A107.0
C3—C4—H4A120.8C21—C16—H16A107.0
C6—C5—C4122.96 (16)C17—C16—H16A107.0
C6—C5—N2118.42 (15)C16—C17—C18110.00 (15)
C4—C5—N2118.59 (16)C16—C17—H17A109.7
C5—C6—C7118.05 (16)C18—C17—H17A109.7
C5—C6—H6A121.0C16—C17—H17B109.7
C7—C6—H6A121.0C18—C17—H17B109.7
C6—C7—C2120.72 (16)H17A—C17—H17B108.2
C6—C7—H7A119.6C19—C18—C17111.18 (16)
C2—C7—H7A119.6C19—C18—H18A109.4
N3—C8—H8A109.5C17—C18—H18A109.4
N3—C8—H8B109.5C19—C18—H18B109.4
H8A—C8—H8B109.5C17—C18—H18B109.4
N3—C8—H8C109.5H18A—C18—H18B108.0
H8A—C8—H8C109.5C18—C19—C20111.10 (16)
H8B—C8—H8C109.5C18—C19—H19A109.4
N3—C9—C10112.56 (14)C20—C19—H19A109.4
N3—C9—C14111.46 (14)C18—C19—H19B109.4
C10—C9—C14111.44 (15)C20—C19—H19B109.4
N3—C9—H9A107.0H19A—C19—H19B108.0
C10—C9—H9A107.0C19—C20—C21111.01 (17)
C14—C9—H9A107.0C19—C20—H20A109.4
C9—C10—C11111.17 (15)C21—C20—H20A109.4
C9—C10—H10A109.4C19—C20—H20B109.4
C11—C10—H10A109.4C21—C20—H20B109.4
C9—C10—H10B109.4H20A—C20—H20B108.0
C11—C10—H10B109.4C16—C21—C20110.50 (15)
H10A—C10—H10B108.0C16—C21—H21A109.5
C12—C11—C10111.01 (16)C20—C21—H21A109.5
C12—C11—H11A109.4C16—C21—H21B109.5
C10—C11—H11A109.4C20—C21—H21B109.5
C12—C11—H11B109.4H21A—C21—H21B108.1
C10—C11—H11B109.4
O1—P1—N1—C1173.62 (13)C4—C5—C6—C71.1 (3)
N3—P1—N1—C152.83 (15)N2—C5—C6—C7−176.72 (15)
N4—P1—N1—C1−61.59 (15)C5—C6—C7—C2−0.6 (2)
O1—P1—N3—C8156.29 (15)C3—C2—C7—C6−0.5 (2)
N4—P1—N3—C829.03 (17)C1—C2—C7—C6174.68 (15)
N1—P1—N3—C8−85.04 (17)C8—N3—C9—C1049.4 (2)
O1—P1—N3—C9−29.95 (15)P1—N3—C9—C10−124.79 (14)
N4—P1—N3—C9−157.20 (12)C8—N3—C9—C14−76.7 (2)
N1—P1—N3—C988.73 (13)P1—N3—C9—C14109.15 (15)
O1—P1—N4—C15−55.86 (16)N3—C9—C10—C11178.22 (15)
N3—P1—N4—C1566.78 (16)C14—C9—C10—C11−55.7 (2)
N1—P1—N4—C15−173.32 (14)C9—C10—C11—C1255.4 (2)
O1—P1—N4—C1698.72 (15)C10—C11—C12—C13−55.9 (2)
N3—P1—N4—C16−138.64 (14)C11—C12—C13—C1456.5 (2)
N1—P1—N4—C16−18.74 (16)N3—C9—C14—C13−177.44 (16)
P1—N1—C1—O2−9.5 (2)C10—C9—C14—C1355.9 (2)
P1—N1—C1—C2166.63 (11)C12—C13—C14—C9−56.2 (2)
O2—C1—C2—C3166.11 (16)C15—N4—C16—C2181.6 (2)
N1—C1—C2—C3−10.1 (2)P1—N4—C16—C21−72.46 (19)
O2—C1—C2—C7−8.9 (2)C15—N4—C16—C17−43.9 (2)
N1—C1—C2—C7174.87 (14)P1—N4—C16—C17162.03 (13)
C7—C2—C3—C41.1 (3)N4—C16—C17—C18−174.96 (15)
C1—C2—C3—C4−173.82 (16)C21—C16—C17—C1857.9 (2)
C2—C3—C4—C5−0.5 (3)C16—C17—C18—C19−56.7 (2)
C3—C4—C5—C6−0.6 (3)C17—C18—C19—C2055.6 (2)
C3—C4—C5—N2177.27 (16)C18—C19—C20—C21−55.6 (2)
O4—N2—C5—C6168.44 (17)N4—C16—C21—C20175.75 (15)
O3—N2—C5—C6−11.0 (2)C17—C16—C21—C20−58.2 (2)
O4—N2—C5—C4−9.5 (2)C19—C20—C21—C1656.9 (2)
O3—N2—C5—C4171.09 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.861.912.7622 (18)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O1i0.861.912.7622 (18)167

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N,N'-Dicyclo-hexyl-N''-(4-nitro-benzo-yl)phospho-ric triamide.

Authors:  Fahimeh Sabbaghi; Mehrdad Pourayoubi; Maryam Toghraee; Vladimir Divjakovic
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-13
  2 in total
  2 in total

1.  N,N'-Bis(2-chloro-benz-yl)-N''-(dichloro-acet-yl)phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Maryam Toghraee; Vladimir Divjakovic
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-12

2.  N,N,N',N'-Tetra-benzyl-N''-(2,6-difluoro-benzo-yl)phospho-ric triamide.

Authors:  Akbar Raissi Shabari; Mehrdad Pourayoubi; Atekeh Tarahhomi; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-20
  2 in total

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