Literature DB >> 21523155

N,N'-Dicyclo-hexyl-N'',N''-dimethyl-phospho-ric triamide.

Fahimeh Sabbaghi, Mehrdad Pourayoubi, Fatemeh Karimi Ahmadabad, Zahra Azarkamanzad, Ali Asghar Ebrahimi Valmoozi.   

Abstract

In the title compound, C(14)H(30)N(3)OP, both cyclo-hexyl groups adopt chair conformations with the NH unit in an equatorial position. The P atom adopts a slightly distorted tetra-hedral environment. In the (CH(3))(2)NP(O) unit, the O-P-N-C torsion angles, showing the orientations of the methyl groups with respect to the phosphoryl group, are -166.6 (3) and 34.6 (4)°. The O atom of the P=O group acts as a double hydrogen-bond acceptor and is involved in two different inter-molecular N-H⋯OP hydrogen bonds, building R(2) (2)(8) rings that are further linked into chains running parallel to the b axis.

Entities:  

Year:  2011        PMID: 21523155      PMCID: PMC3051506          DOI: 10.1107/S160053681100287X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of a phospho­ramidate with a [(CH3)2N]P(O) unit, see: Ghadimi et al. (2009 ▶). For bond distances in related structures, see: Sabbaghi et al. (2010 ▶). For hydrogen-bond motifs, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶). For double hydrogen-bond acceptors, see: Steiner (2002 ▶).

Experimental

Crystal data

C14H30N3OP M = 287.38 Monoclinic, a = 11.742 (4) Å b = 7.712 (3) Å c = 18.366 (6) Å β = 102.120 (7)° V = 1626.0 (10) Å3 Z = 4 Mo Kα radiation μ = 0.17 mm−1 T = 120 K 0.23 × 0.19 × 0.13 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1998 ▶) T min = 0.932, T max = 0.974 11336 measured reflections 3507 independent reflections 1873 reflections with I > 2σ(I) R int = 0.103

Refinement

R[F 2 > 2σ(F 2)] = 0.072 wR(F 2) = 0.199 S = 1.04 3507 reflections 174 parameters H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.47 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681100287X/nc2217sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681100287X/nc2217Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H30N3OPF(000) = 632
Mr = 287.38Dx = 1.174 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1063 reflections
a = 11.742 (4) Åθ = 2.3–26.9°
b = 7.712 (3) ŵ = 0.17 mm1
c = 18.366 (6) ÅT = 120 K
β = 102.120 (7)°Prizm, colorless
V = 1626.0 (10) Å30.23 × 0.19 × 0.13 mm
Z = 4
Bruker SMART 1000 CCD area-detector diffractometer3507 independent reflections
Radiation source: normal-focus sealed tube1873 reflections with I > 2σ(I)
graphiteRint = 0.103
φ and ω scansθmax = 27.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1998)h = −15→14
Tmin = 0.932, Tmax = 0.974k = −9→9
11336 measured reflectionsl = −23→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.072Hydrogen site location: mixed
wR(F2) = 0.199H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.062P)2 + 2.1669P] where P = (Fo2 + 2Fc2)/3
3507 reflections(Δ/σ)max < 0.001
174 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.47 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.15685 (9)0.10911 (13)0.22176 (6)0.0231 (3)
O10.2842 (2)0.0799 (3)0.23095 (15)0.0261 (6)
N10.1077 (3)0.2079 (4)0.14150 (19)0.0287 (8)
N20.0944 (3)−0.0770 (4)0.23092 (18)0.0250 (8)
H20.1465−0.16330.24350.030*
N30.1111 (3)0.2411 (4)0.27929 (18)0.0242 (8)
H30.13590.35180.28190.029*
C10.1595 (4)0.1671 (6)0.0782 (2)0.0385 (11)
H1A0.16620.27330.05010.058*
H1B0.11010.08340.04580.058*
H1C0.23710.11700.09600.058*
C2−0.0065 (4)0.2895 (6)0.1205 (3)0.0371 (11)
H2A0.00100.40070.09610.056*
H2B−0.03810.30900.16520.056*
H2C−0.05910.21350.08610.056*
C3−0.0309 (3)−0.1127 (5)0.2152 (2)0.0229 (8)
H3A−0.0725−0.00330.22300.027*
C4−0.0756 (3)−0.1728 (5)0.1348 (2)0.0281 (9)
H4A−0.0616−0.08070.10020.034*
H4B−0.0320−0.27740.12520.034*
C5−0.2050 (4)−0.2142 (6)0.1202 (2)0.0302 (10)
H5A−0.2312−0.25510.06820.036*
H5B−0.2492−0.10790.12640.036*
C6−0.2297 (4)−0.3535 (5)0.1737 (2)0.0299 (10)
H6A−0.3145−0.37660.16420.036*
H6B−0.1899−0.46240.16510.036*
C7−0.1876 (3)−0.2957 (5)0.2534 (2)0.0279 (9)
H7A−0.2012−0.38970.28730.033*
H7B−0.2329−0.19310.26310.033*
C8−0.0574 (4)−0.2497 (5)0.2699 (2)0.0272 (9)
H8A−0.0113−0.35550.26610.033*
H8B−0.0342−0.20490.32140.033*
C90.1053 (3)0.1887 (5)0.3554 (2)0.0229 (9)
H9A0.05960.07840.35170.027*
C100.0390 (4)0.3243 (5)0.3902 (2)0.0295 (10)
H10A−0.03860.34320.35760.035*
H10B0.08190.43560.39470.035*
C110.0243 (4)0.2654 (6)0.4670 (3)0.0362 (11)
H11A−0.02340.15860.46210.043*
H11B−0.01680.35630.48950.043*
C120.1444 (4)0.2298 (6)0.5181 (2)0.0385 (11)
H12A0.18940.33910.52680.046*
H12B0.13340.18630.56690.046*
C130.2116 (4)0.0969 (6)0.4830 (2)0.0362 (10)
H13A0.1707−0.01600.47970.043*
H13B0.29000.08140.51500.043*
C140.2238 (3)0.1534 (6)0.4049 (2)0.0298 (10)
H14A0.27200.25960.40860.036*
H14B0.26370.06110.38220.036*
U11U22U33U12U13U23
P10.0193 (5)0.0217 (5)0.0295 (6)−0.0005 (4)0.0079 (4)−0.0001 (4)
O10.0198 (14)0.0238 (15)0.0363 (16)−0.0024 (11)0.0096 (12)−0.0017 (12)
N10.028 (2)0.0280 (19)0.031 (2)0.0039 (15)0.0084 (15)0.0020 (15)
N20.0175 (17)0.0233 (18)0.0352 (19)0.0007 (13)0.0077 (14)0.0006 (14)
N30.0225 (18)0.0228 (18)0.0289 (19)−0.0022 (13)0.0087 (14)−0.0016 (14)
C10.055 (3)0.030 (2)0.034 (3)0.004 (2)0.019 (2)0.0054 (19)
C20.033 (3)0.034 (2)0.043 (3)0.006 (2)0.003 (2)0.007 (2)
C30.0155 (19)0.0207 (19)0.033 (2)−0.0009 (16)0.0064 (16)−0.0002 (17)
C40.029 (2)0.027 (2)0.031 (2)−0.0042 (18)0.0119 (18)−0.0033 (18)
C50.026 (2)0.036 (2)0.029 (2)−0.0036 (18)0.0054 (18)−0.0019 (18)
C60.021 (2)0.029 (2)0.041 (3)−0.0014 (17)0.0086 (18)−0.0020 (19)
C70.024 (2)0.025 (2)0.038 (2)−0.0022 (17)0.0133 (18)0.0024 (18)
C80.026 (2)0.025 (2)0.031 (2)0.0017 (17)0.0058 (17)0.0008 (17)
C90.019 (2)0.023 (2)0.029 (2)−0.0053 (16)0.0085 (16)−0.0014 (17)
C100.028 (2)0.026 (2)0.039 (2)−0.0008 (18)0.0164 (19)0.0023 (18)
C110.038 (3)0.036 (3)0.041 (3)0.000 (2)0.020 (2)−0.001 (2)
C120.046 (3)0.045 (3)0.024 (2)−0.007 (2)0.006 (2)−0.002 (2)
C130.031 (2)0.041 (3)0.036 (2)−0.005 (2)0.0048 (19)0.006 (2)
C140.024 (2)0.031 (2)0.035 (2)−0.0026 (17)0.0082 (18)0.0004 (18)
P1—O11.486 (3)C6—C71.511 (6)
P1—N21.636 (3)C6—H6A0.9900
P1—N31.637 (3)C6—H6B0.9900
P1—N11.652 (4)C7—C81.536 (6)
N1—C21.457 (5)C7—H7A0.9900
N1—C11.456 (5)C7—H7B0.9900
N2—C31.465 (5)C8—H8A0.9900
N2—H20.9000C8—H8B0.9900
N3—C91.471 (5)C9—C141.518 (5)
N3—H30.9000C9—C101.522 (5)
C1—H1A0.9800C9—H9A1.0000
C1—H1B0.9800C10—C111.526 (6)
C1—H1C0.9800C10—H10A0.9900
C2—H2A0.9800C10—H10B0.9900
C2—H2B0.9800C11—C121.545 (6)
C2—H2C0.9800C11—H11A0.9900
C3—C41.532 (5)C11—H11B0.9900
C3—C81.534 (5)C12—C131.518 (6)
C3—H3A1.0000C12—H12A0.9900
C4—C51.521 (6)C12—H12B0.9900
C4—H4A0.9900C13—C141.535 (6)
C4—H4B0.9900C13—H13A0.9900
C5—C61.524 (6)C13—H13B0.9900
C5—H5A0.9900C14—H14A0.9900
C5—H5B0.9900C14—H14B0.9900
O1—P1—N2108.49 (16)H6A—C6—H6B108.1
O1—P1—N3118.64 (16)C6—C7—C8111.7 (3)
N2—P1—N3105.33 (17)C6—C7—H7A109.3
O1—P1—N1109.04 (17)C8—C7—H7A109.3
N2—P1—N1114.59 (17)C6—C7—H7B109.3
N3—P1—N1100.87 (17)C8—C7—H7B109.3
C2—N1—C1113.4 (3)H7A—C7—H7B108.0
C2—N1—P1124.4 (3)C7—C8—C3111.1 (3)
C1—N1—P1119.1 (3)C7—C8—H8A109.4
C3—N2—P1126.7 (3)C3—C8—H8A109.4
C3—N2—H2120.8C7—C8—H8B109.4
P1—N2—H2112.3C3—C8—H8B109.4
C9—N3—P1122.0 (3)H8A—C8—H8B108.0
C9—N3—H3106.8N3—C9—C14113.4 (3)
P1—N3—H3118.5N3—C9—C10109.9 (3)
N1—C1—H1A109.5C14—C9—C10111.0 (3)
N1—C1—H1B109.5N3—C9—H9A107.4
H1A—C1—H1B109.5C14—C9—H9A107.4
N1—C1—H1C109.5C10—C9—H9A107.4
H1A—C1—H1C109.5C9—C10—C11110.5 (3)
H1B—C1—H1C109.5C9—C10—H10A109.6
N1—C2—H2A109.5C11—C10—H10A109.6
N1—C2—H2B109.5C9—C10—H10B109.6
H2A—C2—H2B109.5C11—C10—H10B109.6
N1—C2—H2C109.5H10A—C10—H10B108.1
H2A—C2—H2C109.5C10—C11—C12110.5 (3)
H2B—C2—H2C109.5C10—C11—H11A109.6
N2—C3—C4111.9 (3)C12—C11—H11A109.6
N2—C3—C8109.5 (3)C10—C11—H11B109.6
C4—C3—C8110.3 (3)C12—C11—H11B109.6
N2—C3—H3A108.3H11A—C11—H11B108.1
C4—C3—H3A108.3C13—C12—C11110.5 (4)
C8—C3—H3A108.3C13—C12—H12A109.5
C5—C4—C3111.2 (3)C11—C12—H12A109.5
C5—C4—H4A109.4C13—C12—H12B109.5
C3—C4—H4A109.4C11—C12—H12B109.5
C5—C4—H4B109.4H12A—C12—H12B108.1
C3—C4—H4B109.4C12—C13—C14111.4 (4)
H4A—C4—H4B108.0C12—C13—H13A109.3
C4—C5—C6110.6 (3)C14—C13—H13A109.3
C4—C5—H5A109.5C12—C13—H13B109.3
C6—C5—H5A109.5C14—C13—H13B109.3
C4—C5—H5B109.5H13A—C13—H13B108.0
C6—C5—H5B109.5C9—C14—C13110.9 (3)
H5A—C5—H5B108.1C9—C14—H14A109.5
C7—C6—C5110.4 (3)C13—C14—H14A109.5
C7—C6—H6A109.6C9—C14—H14B109.5
C5—C6—H6A109.6C13—C14—H14B109.5
C7—C6—H6B109.6H14A—C14—H14B108.1
C5—C6—H6B109.6
O1—P1—N1—C2−166.6 (3)C3—C4—C5—C6−58.0 (4)
N2—P1—N1—C271.6 (4)C4—C5—C6—C757.8 (4)
N3—P1—N1—C2−40.9 (4)C5—C6—C7—C8−56.5 (4)
O1—P1—N1—C134.6 (4)C6—C7—C8—C355.2 (4)
N2—P1—N1—C1−87.2 (3)N2—C3—C8—C7−177.9 (3)
N3—P1—N1—C1160.2 (3)C4—C3—C8—C7−54.3 (4)
O1—P1—N2—C3−170.3 (3)P1—N3—C9—C1465.7 (4)
N3—P1—N2—C361.7 (3)P1—N3—C9—C10−169.4 (3)
N1—P1—N2—C3−48.2 (4)N3—C9—C10—C11175.8 (3)
O1—P1—N3—C9−77.8 (3)C14—C9—C10—C11−57.9 (4)
N2—P1—N3—C943.8 (3)C9—C10—C11—C1257.5 (5)
N1—P1—N3—C9163.3 (3)C10—C11—C12—C13−56.5 (5)
P1—N2—C3—C491.1 (4)C11—C12—C13—C1455.4 (5)
P1—N2—C3—C8−146.3 (3)N3—C9—C14—C13−179.2 (3)
N2—C3—C4—C5178.3 (3)C10—C9—C14—C1356.6 (4)
C8—C3—C4—C556.1 (4)C12—C13—C14—C9−55.7 (5)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.902.163.017 (4)160
N3—H3···O1ii0.902.032.911 (4)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1i0.902.163.017 (4)160
N3—H3⋯O1ii0.902.032.911 (4)165

Symmetry codes: (i) ; (ii) .

  4 in total

1.  The hydrogen bond in the solid state.

Authors:  Thomas Steiner
Journal:  Angew Chem Int Ed Engl       Date:  2002-01-04       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  N,N'-Dicyclo-hexyl-N''-(4-nitro-benzo-yl)phospho-ric triamide.

Authors:  Fahimeh Sabbaghi; Mehrdad Pourayoubi; Maryam Toghraee; Vladimir Divjakovic
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-13
  4 in total
  3 in total

1.  N,N'-Dicyclo-pentyl-N'',N''-dimethyl-phospho-ric triamide.

Authors:  Akbar Raissi Shabari; Mehrdad Pourayoubi; Farnaz Ghoreishi; Banafsheh Vahdani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-23

2.  N,N-Dimethyl-N',N''-diphenyl-phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Mohammad Yousefi; Farnaz Eslami; Arnold L Rheingold; Chao Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-09

3.  Cyclo-hexyl-ammonium acetate-N,N',N''-tricyclo-hexyl-phospho-ric triamide (1/1).

Authors:  Mehrdad Pourayoubi; Mojtaba Keikha; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30
  3 in total

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