Literature DB >> 21523017

N,N'-Bis(2-chloro-benz-yl)-N''-(dichloro-acet-yl)phospho-ric triamide.

Mehrdad Pourayoubi, Maryam Toghraee, Vladimir Divjakovic.   

Abstract

In the title compound, C(16)H(16)Cl(4)N(3)O(2)P, the phosphoryl and carbonyl groups are anti to each other. The dihedral angle between the benzene rings is 33.59 (16)°. In the crystal, adjacent mol-ecules are linked via N-H⋯O=P and N-H⋯O=C hydrogen bonds, into an extended chain running parallel to the a axis.

Entities:  

Year:  2011        PMID: 21523017      PMCID: PMC3051657          DOI: 10.1107/S1600536811000845

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biologically active organo­phospho­rus compounds, see: Ekstrom et al. (2006 ▶). For the anti­cancer activity of compounds with a C(O)NHP(O) skeleton, see: Gholivand et al. (2011 ▶). For related structures, see: Sabbaghi et al. (2010 ▶).

Experimental

Crystal data

C16H16Cl4N3O2P M = 455.09 Triclinic, a = 9.901 (1) Å b = 10.179 (1) Å c = 12.013 (2) Å α = 90.403 (5)° β = 112.851 (6)° γ = 114.084 (6)° V = 998.7 (2) Å3 Z = 2 Mo Kα radiation μ = 0.69 mm−1 T = 295 K 0.22 × 0.12 × 0.11 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.978, T max = 1.000 6193 measured reflections 3510 independent reflections 2786 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.156 S = 1.02 3510 reflections 235 parameters H-atom parameters constrained Δρmax = 0.96 e Å−3 Δρmin = −0.65 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811000845/fi2102sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811000845/fi2102Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16Cl4N3O2PZ = 2
Mr = 455.09F(000) = 464
Triclinic, P1Dx = 1.513 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.901 (1) ÅCell parameters from 2802 reflections
b = 10.179 (1) Åθ = 3.5–29.0°
c = 12.013 (2) ŵ = 0.69 mm1
α = 90.403 (5)°T = 295 K
β = 112.851 (6)°Prism, colourless
γ = 114.084 (6)°0.22 × 0.12 × 0.11 mm
V = 998.7 (2) Å3
Oxford Diffraction Xcalibur Sapphire3 Gemini diffractometer3510 independent reflections
Radiation source: Enhance (Mo) X-ray Source2786 reflections with I > 2σ(I)
graphiteRint = 0.018
Detector resolution: 16.3280 pixels mm-1θmax = 25.0°, θmin = 3.5°
ω scansh = −11→9
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −11→12
Tmin = 0.978, Tmax = 1.000l = −14→13
6193 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.156H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0618P)2 + 1.5174P] where P = (Fo2 + 2Fc2)/3
3510 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.96 e Å3
0 restraintsΔρmin = −0.65 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P0.84901 (11)0.52095 (11)0.59850 (8)0.0398 (3)
Cl10.4017 (2)0.3402 (3)0.12756 (12)0.1300 (8)
Cl20.5672 (2)0.16627 (16)0.23126 (18)0.1108 (6)
Cl30.65788 (18)0.91760 (16)0.50769 (15)0.0893 (5)
Cl40.77087 (18)0.44836 (16)1.03178 (11)0.0804 (4)
O11.0238 (3)0.5568 (3)0.6484 (2)0.0543 (7)
O20.5072 (3)0.4115 (4)0.3908 (3)0.0670 (9)
N10.7379 (4)0.4006 (4)0.6531 (3)0.0496 (8)
H10.66270.31840.60480.059*
N20.7656 (3)0.4413 (3)0.4495 (3)0.0427 (7)
H20.82790.42390.42400.051*
N30.8251 (4)0.6669 (3)0.6149 (3)0.0481 (8)
H30.75380.66310.64050.058*
C10.5775 (5)0.3419 (5)0.2368 (4)0.0512 (10)
H1A0.66960.40580.21970.061*
C20.6105 (4)0.4020 (4)0.3661 (3)0.0423 (8)
C30.9204 (5)0.8049 (5)0.5877 (4)0.0611 (11)
H3A1.02920.81420.60810.073*
H3B0.93190.88590.63950.073*
C40.8437 (5)0.8158 (4)0.4545 (4)0.0524 (10)
C50.7214 (5)0.8603 (4)0.4084 (4)0.0560 (10)
C60.6453 (6)0.8610 (5)0.2847 (5)0.0741 (14)
H60.56350.89190.25700.089*
C70.6907 (8)0.8161 (6)0.2034 (5)0.0846 (16)
H70.63930.81550.11990.102*
C80.8110 (8)0.7727 (6)0.2449 (5)0.0837 (16)
H80.84240.74280.18970.100*
C90.8878 (6)0.7724 (5)0.3692 (5)0.0678 (12)
H90.97050.74250.39600.081*
C100.7581 (5)0.4233 (5)0.7789 (4)0.0513 (10)
H10A0.65850.42110.77760.062*
H10B0.84620.52030.82150.062*
C110.7950 (4)0.3128 (4)0.8509 (3)0.0458 (9)
C120.8030 (5)0.3159 (5)0.9693 (4)0.0571 (11)
C130.8391 (6)0.2189 (6)1.0401 (5)0.0745 (14)
H130.84610.22471.11960.089*
C140.8644 (7)0.1145 (7)0.9923 (6)0.0904 (17)
H140.88750.04761.03910.108*
C150.8562 (7)0.1062 (6)0.8740 (6)0.0893 (17)
H150.87330.03430.84140.107*
C160.8225 (6)0.2060 (5)0.8060 (5)0.0657 (12)
H160.81820.20130.72730.079*
U11U22U33U12U13U23
P0.0347 (5)0.0643 (6)0.0311 (5)0.0268 (5)0.0192 (4)0.0135 (4)
Cl10.1450 (15)0.226 (2)0.0426 (7)0.1471 (16)−0.0041 (8)−0.0079 (9)
Cl20.1193 (13)0.0728 (9)0.1247 (14)0.0485 (9)0.0318 (11)−0.0113 (9)
Cl30.0902 (10)0.0832 (9)0.1143 (12)0.0446 (8)0.0567 (9)0.0103 (8)
Cl40.1089 (10)0.1091 (10)0.0488 (7)0.0593 (9)0.0469 (7)0.0242 (6)
O10.0390 (14)0.097 (2)0.0371 (14)0.0384 (15)0.0170 (12)0.0138 (14)
O20.0404 (15)0.119 (3)0.0490 (17)0.0405 (17)0.0219 (13)0.0053 (16)
N10.0538 (19)0.060 (2)0.0360 (17)0.0223 (16)0.0241 (15)0.0118 (14)
N20.0367 (16)0.069 (2)0.0332 (16)0.0281 (15)0.0206 (13)0.0093 (14)
N30.0443 (17)0.062 (2)0.0473 (19)0.0251 (16)0.0272 (15)0.0121 (15)
C10.050 (2)0.064 (2)0.041 (2)0.029 (2)0.0177 (18)0.0055 (18)
C20.0390 (19)0.060 (2)0.0346 (19)0.0248 (18)0.0187 (16)0.0131 (16)
C30.050 (2)0.058 (3)0.061 (3)0.018 (2)0.017 (2)0.008 (2)
C40.048 (2)0.045 (2)0.060 (3)0.0138 (18)0.025 (2)0.0131 (18)
C50.052 (2)0.047 (2)0.065 (3)0.0174 (19)0.027 (2)0.012 (2)
C60.062 (3)0.059 (3)0.084 (4)0.024 (2)0.018 (3)0.022 (3)
C70.089 (4)0.073 (3)0.067 (3)0.019 (3)0.029 (3)0.016 (3)
C80.103 (4)0.075 (3)0.078 (4)0.024 (3)0.058 (3)0.013 (3)
C90.069 (3)0.062 (3)0.086 (4)0.029 (2)0.046 (3)0.021 (2)
C100.058 (2)0.068 (3)0.041 (2)0.031 (2)0.0303 (19)0.0182 (19)
C110.039 (2)0.059 (2)0.041 (2)0.0201 (18)0.0203 (17)0.0160 (17)
C120.050 (2)0.075 (3)0.047 (2)0.027 (2)0.0222 (19)0.021 (2)
C130.070 (3)0.092 (4)0.059 (3)0.034 (3)0.027 (2)0.038 (3)
C140.095 (4)0.097 (4)0.090 (4)0.056 (4)0.036 (3)0.053 (3)
C150.097 (4)0.088 (4)0.112 (5)0.059 (3)0.053 (4)0.046 (3)
C160.069 (3)0.077 (3)0.066 (3)0.038 (3)0.038 (2)0.022 (2)
P—O11.471 (3)C5—C61.382 (7)
P—N11.616 (3)C6—C71.367 (8)
P—N31.619 (3)C6—H60.9300
P—N21.682 (3)C7—C81.354 (8)
Cl1—C11.718 (4)C7—H70.9300
Cl2—C11.748 (4)C8—C91.388 (7)
Cl3—C51.741 (5)C8—H80.9300
Cl4—C121.733 (5)C9—H90.9300
O2—C21.208 (4)C10—C111.500 (5)
N1—C101.450 (5)C10—H10A0.9700
N1—H10.8600C10—H10B0.9700
N2—C21.349 (4)C11—C161.376 (6)
N2—H20.8600C11—C121.394 (5)
N3—C31.461 (5)C12—C131.375 (6)
N3—H30.8600C13—C141.358 (8)
C1—C21.525 (5)C13—H130.9300
C1—H1A0.9800C14—C151.392 (8)
C3—C41.509 (6)C14—H140.9300
C3—H3A0.9700C15—C161.373 (7)
C3—H3B0.9700C15—H150.9300
C4—C51.381 (6)C16—H160.9300
C4—C91.392 (6)
O1—P—N1117.84 (17)C7—C6—C5119.7 (5)
O1—P—N3110.86 (18)C7—C6—H6120.1
N1—P—N3106.48 (17)C5—C6—H6120.1
O1—P—N2106.38 (15)C8—C7—C6119.7 (5)
N1—P—N2103.08 (16)C8—C7—H7120.2
N3—P—N2112.03 (16)C6—C7—H7120.2
C10—N1—P123.7 (3)C7—C8—C9120.7 (5)
C10—N1—H1118.2C7—C8—H8119.7
P—N1—H1118.2C9—C8—H8119.7
C2—N2—P126.3 (2)C4—C9—C8121.3 (5)
C2—N2—H2116.9C4—C9—H9119.3
P—N2—H2116.9C8—C9—H9119.3
C3—N3—P122.2 (3)N1—C10—C11114.6 (3)
C3—N3—H3118.9N1—C10—H10A108.6
P—N3—H3118.9C11—C10—H10A108.6
C2—C1—Cl1111.5 (3)N1—C10—H10B108.6
C2—C1—Cl2109.2 (3)C11—C10—H10B108.6
Cl1—C1—Cl2111.2 (2)H10A—C10—H10B107.6
C2—C1—H1A108.3C16—C11—C12117.0 (4)
Cl1—C1—H1A108.3C16—C11—C10123.2 (4)
Cl2—C1—H1A108.3C12—C11—C10119.7 (4)
O2—C2—N2123.9 (3)C13—C12—C11122.2 (5)
O2—C2—C1123.1 (3)C13—C12—Cl4118.4 (4)
N2—C2—C1113.0 (3)C11—C12—Cl4119.4 (3)
N3—C3—C4113.0 (3)C12—C13—C14119.0 (5)
N3—C3—H3A109.0C12—C13—H13120.5
C4—C3—H3A109.0C14—C13—H13120.5
N3—C3—H3B109.0C15—C14—C13120.8 (5)
C4—C3—H3B109.0C15—C14—H14119.6
H3A—C3—H3B107.8C13—C14—H14119.6
C5—C4—C9116.2 (4)C14—C15—C16118.9 (5)
C5—C4—C3123.2 (4)C14—C15—H15120.6
C9—C4—C3120.5 (4)C16—C15—H15120.6
C4—C5—C6122.5 (4)C11—C16—C15122.0 (5)
C4—C5—Cl3119.7 (4)C11—C16—H16119.0
C6—C5—Cl3117.8 (4)C15—C16—H16119.0
O1—P—N1—C1066.5 (4)C4—C5—C6—C70.1 (7)
N3—P—N1—C10−58.7 (3)Cl3—C5—C6—C7−179.6 (4)
N2—P—N1—C10−176.8 (3)C5—C6—C7—C8−0.6 (8)
O1—P—N2—C2−174.1 (3)C6—C7—C8—C90.4 (8)
N1—P—N2—C261.3 (4)C5—C4—C9—C8−0.7 (6)
N3—P—N2—C2−52.8 (4)C3—C4—C9—C8175.8 (4)
O1—P—N3—C344.0 (3)C7—C8—C9—C40.3 (8)
N1—P—N3—C3173.4 (3)P—N1—C10—C11−121.2 (3)
N2—P—N3—C3−74.6 (3)N1—C10—C11—C165.6 (6)
P—N2—C2—O2−4.7 (6)N1—C10—C11—C12−174.5 (4)
P—N2—C2—C1176.0 (3)C16—C11—C12—C131.0 (6)
Cl1—C1—C2—O217.2 (5)C10—C11—C12—C13−178.9 (4)
Cl2—C1—C2—O2−106.1 (4)C16—C11—C12—Cl4179.6 (3)
Cl1—C1—C2—N2−163.5 (3)C10—C11—C12—Cl4−0.3 (5)
Cl2—C1—C2—N273.2 (4)C11—C12—C13—C14−1.4 (7)
P—N3—C3—C487.6 (4)Cl4—C12—C13—C14179.9 (4)
N3—C3—C4—C583.3 (5)C12—C13—C14—C150.8 (9)
N3—C3—C4—C9−93.0 (5)C13—C14—C15—C160.2 (9)
C9—C4—C5—C60.5 (6)C12—C11—C16—C150.1 (7)
C3—C4—C5—C6−175.9 (4)C10—C11—C16—C15180.0 (5)
C9—C4—C5—Cl3−179.7 (3)C14—C15—C16—C11−0.7 (8)
C3—C4—C5—Cl33.9 (5)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.861.932.756 (4)162
N3—H3···O2ii0.862.243.024 (4)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1i0.861.932.756 (4)162
N3—H3⋯O2ii0.862.243.024 (4)151

Symmetry codes: (i) ; (ii) .

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3.  N,N'-Dicyclo-hexyl-N''-(4-nitro-benzo-yl)phospho-ric triamide.

Authors:  Fahimeh Sabbaghi; Mehrdad Pourayoubi; Maryam Toghraee; Vladimir Divjakovic
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4.  N,N'-Dicyclo-hexyl-N,N'-dimethyl-N''-(4-nitro-benzo-yl)phospho-ric triamide.

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