Literature DB >> 21754203

N-(2-Fluoro-benzo-yl)-N',N''-bis-(4-methyl-phen-yl)phospho-ric triamide.

Mehrdad Pourayoubi, Atekeh Tarahhomi, Arnold L Rheingold, James A Golen.   

Abstract

The P atom in the title compound, C(21)H(21)FN(3)O(2)P, is in a tetra-hedral coordination environment and the environment of each N atom is essentially planar (sums of angles = 359.7, 359.9 and 358.4°). The phosphoryl and carbonyl groups adopt anti orientations with respect to each other. In the crystal, adjacent mol-ecules are linked via N-H⋯O=P and two N-H⋯O=C hydrogen bonds into an extended chain parallel to the a axis.

Entities:  

Year:  2011        PMID: 21754203      PMCID: PMC3100001          DOI: 10.1107/S1600536811009640

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a phospho­rus ligand having a C(O)NHP(O) skeleton, see: Gholivand et al. (2010 ▶). For a related structure, see: Pourayoubi et al. (2010 ▶). For bond lengths in related structures, see: Sabbaghi et al. (2010 ▶) and references cited therein.

Experimental

Crystal data

C21H21FN3O2P M = 397.38 Monoclinic, a = 9.7697 (9) Å b = 10.2197 (9) Å c = 20.2404 (18) Å β = 96.605 (1)° V = 2007.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.17 mm−1 T = 100 K 0.25 × 0.15 × 0.15 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.959, T max = 0.975 15865 measured reflections 4551 independent reflections 3411 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.127 S = 1.05 4551 reflections 264 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811009640/nc2222sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811009640/nc2222Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H21FN3O2PF(000) = 832
Mr = 397.38Dx = 1.315 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 9.7697 (9) ÅCell parameters from 5744 reflections
b = 10.2197 (9) Åθ = 2.2–27.5°
c = 20.2404 (18) ŵ = 0.17 mm1
β = 96.605 (1)°T = 100 K
V = 2007.5 (3) Å3Block, colourless
Z = 40.25 × 0.15 × 0.15 mm
Bruker SMART CCD area-detector diffractometer4551 independent reflections
Radiation source: fine-focus sealed tube3411 reflections with I > 2σ(I)
graphiteRint = 0.035
φ and ω scansθmax = 27.9°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −12→12
Tmin = 0.959, Tmax = 0.975k = −11→13
15865 measured reflectionsl = −25→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0669P)2 + 0.498P] where P = (Fo2 + 2Fc2)/3
4551 reflections(Δ/σ)max = 0.007
264 parametersΔρmax = 0.41 e Å3
3 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.72255 (5)0.92119 (4)0.50855 (2)0.02136 (14)
F10.92737 (14)1.40039 (12)0.55287 (6)0.0441 (3)
O10.91560 (13)1.14443 (13)0.50431 (6)0.0293 (3)
O20.58757 (12)0.86140 (12)0.51487 (6)0.0250 (3)
N10.69300 (16)1.08365 (14)0.50258 (7)0.0210 (3)
H1N0.6074 (11)1.1095 (19)0.4983 (9)0.025*
N20.79772 (16)0.87866 (15)0.44363 (8)0.0240 (3)
H2N0.8811 (12)0.8507 (19)0.4525 (10)0.029*
N30.84260 (16)0.88686 (16)0.56874 (8)0.0267 (4)
H3N0.9270 (12)0.905 (2)0.5636 (10)0.032*
C10.8139 (2)1.41838 (19)0.50898 (9)0.0296 (4)
C20.7701 (2)1.5451 (2)0.49516 (11)0.0381 (5)
H2C0.81941.61730.51570.046*
C30.6533 (2)1.5647 (2)0.45090 (11)0.0379 (5)
H3B0.62191.65110.44080.045*
C40.5822 (2)1.4596 (2)0.42132 (11)0.0344 (5)
H4A0.50291.47370.39030.041*
C50.6265 (2)1.33331 (19)0.43680 (9)0.0278 (4)
H5A0.57651.26120.41660.033*
C60.74372 (19)1.31052 (17)0.48164 (9)0.0230 (4)
C70.79305 (18)1.17460 (18)0.49728 (8)0.0220 (4)
C80.7441 (2)0.89104 (17)0.37612 (9)0.0244 (4)
C90.6203 (2)0.9545 (2)0.35614 (10)0.0319 (5)
H9A0.56850.99140.38840.038*
C100.5725 (2)0.9640 (2)0.28921 (10)0.0360 (5)
H10A0.48861.00890.27620.043*
C110.6439 (2)0.9096 (2)0.24070 (10)0.0404 (5)
C120.7657 (2)0.8443 (2)0.26118 (10)0.0419 (6)
H12A0.81570.80510.22880.050*
C130.8164 (2)0.8347 (2)0.32801 (10)0.0341 (5)
H13A0.90040.78980.34090.041*
C140.5884 (3)0.9202 (3)0.16774 (11)0.0561 (7)
H14A0.60980.83980.14460.084*
H14B0.63130.99500.14790.084*
H14C0.48840.93260.16360.084*
C150.8269 (2)0.85706 (18)0.63606 (9)0.0260 (4)
C160.7217 (2)0.7756 (2)0.65213 (10)0.0406 (5)
H16A0.65700.74080.61800.049*
C170.7115 (2)0.7452 (3)0.71817 (11)0.0506 (7)
H17A0.63670.69290.72880.061*
C180.8072 (3)0.7891 (2)0.76906 (10)0.0435 (6)
C190.9162 (3)0.8633 (2)0.75138 (11)0.0507 (7)
H19A0.98620.89090.78500.061*
C200.9253 (3)0.8980 (2)0.68584 (11)0.0427 (6)
H20A1.00000.95040.67520.051*
C210.7964 (3)0.7510 (3)0.84055 (11)0.0657 (8)
H21A0.87910.78010.86870.099*
H21B0.78790.65570.84370.099*
H21C0.71500.79260.85560.099*
U11U22U33U12U13U23
P10.0143 (3)0.0263 (2)0.0236 (2)0.00103 (18)0.00229 (18)0.00314 (18)
F10.0442 (8)0.0440 (7)0.0404 (7)−0.0137 (6)−0.0116 (6)−0.0023 (5)
O10.0150 (7)0.0379 (8)0.0351 (8)−0.0004 (6)0.0030 (6)0.0005 (6)
O20.0142 (7)0.0278 (7)0.0330 (7)−0.0001 (5)0.0025 (5)0.0038 (5)
N10.0143 (8)0.0244 (8)0.0245 (8)0.0002 (6)0.0038 (6)0.0007 (6)
N20.0158 (8)0.0297 (8)0.0262 (8)0.0048 (6)0.0015 (6)−0.0003 (6)
N30.0133 (8)0.0388 (9)0.0279 (9)0.0000 (7)0.0018 (7)0.0086 (6)
C10.0288 (11)0.0346 (11)0.0252 (10)−0.0079 (9)0.0024 (8)−0.0004 (8)
C20.0497 (15)0.0292 (10)0.0368 (12)−0.0104 (10)0.0106 (10)−0.0051 (9)
C30.0433 (14)0.0280 (11)0.0443 (12)0.0005 (9)0.0135 (11)0.0062 (9)
C40.0271 (11)0.0353 (11)0.0411 (12)0.0002 (9)0.0058 (9)0.0084 (9)
C50.0231 (10)0.0292 (10)0.0317 (10)−0.0033 (8)0.0057 (8)0.0011 (8)
C60.0202 (10)0.0273 (9)0.0227 (9)−0.0035 (7)0.0073 (7)−0.0015 (7)
C70.0167 (10)0.0303 (9)0.0192 (9)−0.0013 (7)0.0033 (7)−0.0019 (7)
C80.0212 (10)0.0274 (9)0.0247 (9)−0.0034 (8)0.0032 (8)0.0010 (7)
C90.0270 (11)0.0404 (11)0.0278 (10)0.0020 (9)0.0019 (8)−0.0030 (8)
C100.0290 (12)0.0461 (12)0.0313 (11)0.0001 (10)−0.0038 (9)0.0029 (9)
C110.0345 (13)0.0601 (15)0.0262 (11)−0.0110 (11)0.0015 (9)0.0024 (9)
C120.0351 (13)0.0624 (15)0.0300 (12)−0.0047 (11)0.0109 (10)−0.0062 (10)
C130.0254 (11)0.0452 (12)0.0324 (11)0.0013 (9)0.0060 (9)−0.0017 (9)
C140.0465 (16)0.095 (2)0.0262 (12)−0.0108 (14)0.0008 (11)0.0069 (12)
C150.0234 (10)0.0299 (10)0.0248 (10)0.0057 (8)0.0040 (8)0.0025 (7)
C160.0266 (12)0.0627 (15)0.0318 (11)−0.0063 (10)0.0001 (9)0.0129 (10)
C170.0322 (13)0.0782 (18)0.0421 (14)−0.0019 (12)0.0075 (11)0.0229 (12)
C180.0496 (15)0.0558 (14)0.0263 (11)0.0136 (12)0.0098 (10)0.0039 (9)
C190.0709 (19)0.0504 (14)0.0284 (12)−0.0100 (13)−0.0048 (12)−0.0038 (10)
C200.0499 (15)0.0433 (13)0.0336 (12)−0.0166 (11)−0.0006 (10)0.0005 (9)
C210.074 (2)0.095 (2)0.0310 (13)0.0190 (17)0.0163 (13)0.0111 (13)
P1—O21.4723 (13)C9—H9A0.9500
P1—N31.6291 (17)C10—C111.385 (3)
P1—N21.6361 (15)C10—H10A0.9500
P1—N11.6872 (15)C11—C121.386 (3)
F1—C11.351 (2)C11—C141.517 (3)
O1—C71.229 (2)C12—C131.389 (3)
N1—C71.362 (2)C12—H12A0.9500
N1—H1N0.872 (9)C13—H13A0.9500
N2—C81.412 (2)C14—H14A0.9800
N2—H2N0.862 (9)C14—H14B0.9800
N3—C151.422 (2)C14—H14C0.9800
N3—H3N0.863 (9)C15—C201.375 (3)
C1—C61.380 (3)C15—C161.390 (3)
C1—C21.382 (3)C16—C171.387 (3)
C2—C31.382 (3)C16—H16A0.9500
C2—H2C0.9500C17—C181.384 (3)
C3—C41.378 (3)C17—H17A0.9500
C3—H3B0.9500C18—C191.387 (3)
C4—C51.385 (3)C18—C211.514 (3)
C4—H4A0.9500C19—C201.386 (3)
C5—C61.396 (3)C19—H19A0.9500
C5—H5A0.9500C20—H20A0.9500
C6—C71.492 (3)C21—H21A0.9800
C8—C91.391 (3)C21—H21B0.9800
C8—C131.392 (3)C21—H21C0.9800
C9—C101.384 (3)
O2—P1—N3114.88 (8)C9—C10—C11121.7 (2)
O2—P1—N2116.67 (8)C9—C10—H10A119.2
N3—P1—N2101.09 (8)C11—C10—H10A119.2
O2—P1—N1105.49 (8)C10—C11—C12117.8 (2)
N3—P1—N1111.59 (8)C10—C11—C14120.6 (2)
N2—P1—N1107.03 (8)C12—C11—C14121.6 (2)
C7—N1—P1123.97 (13)C11—C12—C13121.5 (2)
C7—N1—H1N118.3 (13)C11—C12—H12A119.2
P1—N1—H1N117.4 (13)C13—C12—H12A119.2
C8—N2—P1127.06 (13)C12—C13—C8120.0 (2)
C8—N2—H2N117.9 (13)C12—C13—H13A120.0
P1—N2—H2N114.9 (13)C8—C13—H13A120.0
C15—N3—P1127.97 (13)C11—C14—H14A109.5
C15—N3—H3N111.7 (14)C11—C14—H14B109.5
P1—N3—H3N118.7 (14)H14A—C14—H14B109.5
F1—C1—C6119.15 (18)C11—C14—H14C109.5
F1—C1—C2118.14 (18)H14A—C14—H14C109.5
C6—C1—C2122.7 (2)H14B—C14—H14C109.5
C3—C2—C1118.7 (2)C20—C15—C16118.94 (18)
C3—C2—H2C120.7C20—C15—N3119.60 (18)
C1—C2—H2C120.7C16—C15—N3121.11 (18)
C4—C3—C2120.4 (2)C17—C16—C15119.8 (2)
C4—C3—H3B119.8C17—C16—H16A120.1
C2—C3—H3B119.8C15—C16—H16A120.1
C3—C4—C5119.9 (2)C18—C17—C16121.8 (2)
C3—C4—H4A120.0C18—C17—H17A119.1
C5—C4—H4A120.0C16—C17—H17A119.1
C4—C5—C6120.93 (19)C17—C18—C19117.3 (2)
C4—C5—H5A119.5C17—C18—C21120.8 (2)
C6—C5—H5A119.5C19—C18—C21121.8 (2)
C1—C6—C5117.37 (18)C20—C19—C18121.5 (2)
C1—C6—C7121.68 (18)C20—C19—H19A119.2
C5—C6—C7120.92 (16)C18—C19—H19A119.2
O1—C7—N1121.22 (17)C15—C20—C19120.5 (2)
O1—C7—C6123.01 (16)C15—C20—H20A119.8
N1—C7—C6115.77 (15)C19—C20—H20A119.8
C9—C8—C13118.93 (18)C18—C21—H21A109.5
C9—C8—N2122.47 (16)C18—C21—H21B109.5
C13—C8—N2118.58 (17)H21A—C21—H21B109.5
C10—C9—C8120.08 (18)C18—C21—H21C109.5
C10—C9—H9A120.0H21A—C21—H21C109.5
C8—C9—H9A120.0H21B—C21—H21C109.5
O2—P1—N1—C7178.66 (14)C5—C6—C7—N1−39.0 (2)
N3—P1—N1—C753.27 (16)P1—N2—C8—C96.1 (3)
N2—P1—N1—C7−56.46 (16)P1—N2—C8—C13−172.26 (15)
O2—P1—N2—C857.27 (18)C13—C8—C9—C10−1.7 (3)
N3—P1—N2—C8−177.42 (15)N2—C8—C9—C10179.93 (18)
N1—P1—N2—C8−60.53 (17)C8—C9—C10—C111.1 (3)
O2—P1—N3—C15−28.7 (2)C9—C10—C11—C120.3 (3)
N2—P1—N3—C15−155.21 (16)C9—C10—C11—C14179.3 (2)
N1—P1—N3—C1591.30 (17)C10—C11—C12—C13−0.9 (3)
F1—C1—C2—C3−179.31 (17)C14—C11—C12—C13180.0 (2)
C6—C1—C2—C3−1.7 (3)C11—C12—C13—C80.3 (3)
C1—C2—C3—C40.1 (3)C9—C8—C13—C121.0 (3)
C2—C3—C4—C51.1 (3)N2—C8—C13—C12179.47 (19)
C3—C4—C5—C6−0.7 (3)P1—N3—C15—C20−144.91 (18)
F1—C1—C6—C5179.64 (15)P1—N3—C15—C1641.9 (3)
C2—C1—C6—C52.0 (3)C20—C15—C16—C174.9 (3)
F1—C1—C6—C7−2.4 (3)N3—C15—C16—C17178.1 (2)
C2—C1—C6—C7179.95 (17)C15—C16—C17—C18−3.0 (4)
C4—C5—C6—C1−0.8 (3)C16—C17—C18—C19−1.2 (4)
C4—C5—C6—C7−178.77 (17)C16—C17—C18—C21−178.0 (2)
P1—N1—C7—O1−8.6 (2)C17—C18—C19—C203.3 (4)
P1—N1—C7—C6170.55 (12)C21—C18—C19—C20−179.9 (2)
C1—C6—C7—O1−37.7 (3)C16—C15—C20—C19−2.8 (3)
C5—C6—C7—O1140.17 (18)N3—C15—C20—C19−176.1 (2)
C1—C6—C7—N1143.13 (17)C18—C19—C20—C15−1.4 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O2i0.87 (1)1.92 (1)2.780 (2)171 (2)
N2—H2N···O1ii0.86 (1)2.08 (1)2.886 (2)156 (2)
N3—H3N···O1ii0.86 (1)2.24 (2)2.945 (2)139 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O2i0.87 (1)1.92 (1)2.780 (2)171 (2)
N2—H2N⋯O1ii0.86 (1)2.08 (1)2.886 (2)156 (2)
N3—H3N⋯O1ii0.86 (1)2.24 (2)2.945 (2)139 (2)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N,N'-Dibenzyl-N''-(2,6-difluoro-benzo-yl)-N,N'-dimethyl-phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-11

3.  N,N'-Dicyclo-hexyl-N''-(4-nitro-benzo-yl)phospho-ric triamide.

Authors:  Fahimeh Sabbaghi; Mehrdad Pourayoubi; Maryam Toghraee; Vladimir Divjakovic
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-13
  3 in total
  2 in total

1.  N,N,N',N'-Tetra-ethyl-N''-(2-fluoro-benzo-yl)phospho-ric triamide.

Authors:  Atekeh Tarahhomi; Mehrdad Pourayoubi; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14

2.  N,N'-Dicyclo-hexyl-N''-(3-fluoro-benzo-yl)-N,N'-dimethyl-phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Samad Shoghpour; Giuseppe Bruno; Hadi Amiri Rudbari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-22
  2 in total

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