Literature DB >> 21754754

N-Benzoyl-N',N''-dicyclo-hexyl-phospho-ric triamide.

Mehrdad Pourayoubi, Mahnaz Rostami Chaijan, Laura Torre-Fernández, Santiago García-Granda.   

Abstract

In the title compound, C(19)H(30)N(3)O(2)P, the central P atom has a distorted tetra-hedral configuration. The N atoms in both cyclo-hexyl-amide moieties exhibit a slight deviation [0.32 (7) and 0.44 (6) Å] from planarity, while the benzoyl-amide N atom is planar [0.11 (3) Å]. In the crystal, mol-ecules are linked via N-H⋯O(P) and N-H⋯O(C) hydrogen bonds, forming R(2) (2)(10) rings within linear arrangements parallel to the b axis.

Entities:  

Year:  2011        PMID: 21754754      PMCID: PMC3120389          DOI: 10.1107/S1600536811016679

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and a spectroscopic study of title compound, see: Gholivand et al. (2006 ▶). For bond lengths in related structures, see: Sabbaghi et al. (2010 ▶); Rudd et al. (1996 ▶). For hydrogen-bond motifs, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C19H30N3O2P M = 363.43 Monoclinic, a = 20.9904 (17) Å b = 5.1503 (2) Å c = 21.1125 (18) Å β = 121.955 (11)° V = 1936.5 (2) Å3 Z = 4 Cu Kα radiation μ = 1.39 mm−1 T = 293 K 0.28 × 0.05 × 0.01 mm

Data collection

Oxford Diffraction Xcalibur Ruby Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.978, T max = 1.000 2758 measured reflections 2758 independent reflections 2294 reflections with I > 2σ(I) R int = 0.064

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.122 S = 1.05 2758 reflections 239 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.46 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack (1983 ▶), 908 Friedel pairs Flack parameter: 0.11 (4) Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811016679/ld2010sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016679/ld2010Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H30N3O2PF(000) = 784
Mr = 363.43Dx = 1.247 Mg m3
Monoclinic, CcCu Kα radiation, λ = 1.54180 Å
Hall symbol: C -2ycCell parameters from 1733 reflections
a = 20.9904 (17) Åθ = 4.2–70.2°
b = 5.1503 (2) ŵ = 1.39 mm1
c = 21.1125 (18) ÅT = 293 K
β = 121.955 (11)°Prismatic, colorless
V = 1936.5 (2) Å30.28 × 0.05 × 0.01 mm
Z = 4
Oxford Diffraction Xcalibur Ruby Gemini diffractometer2758 independent reflections
Radiation source: Enhance (Cu) X-ray Source2294 reflections with I > 2σ(I)
graphiteRint = 0.064
Detector resolution: 10.2673 pixels mm-1θmax = 70.3°, θmin = 4.8°
ω scansh = −24→24
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = 0→6
Tmin = 0.978, Tmax = 1.000l = −25→25
2758 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.122w = 1/[σ2(Fo2) + (0.0489P)2] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2758 reflectionsΔρmax = 0.46 e Å3
239 parametersΔρmin = −0.18 e Å3
2 restraintsAbsolute structure: Flack (1983), 908 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.11 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.00072 (6)0.2629 (2)0.30701 (6)0.0403 (2)
O2−0.02706 (18)0.5292 (5)0.30029 (19)0.0504 (8)
O30.11281 (18)−0.1251 (6)0.3206 (2)0.0578 (9)
N40.0865 (2)0.3029 (6)0.3150 (2)0.0435 (8)
N5−0.0520 (2)0.0724 (7)0.2376 (2)0.0438 (9)
N60.0150 (2)0.0959 (8)0.3781 (2)0.0458 (9)
C70.1289 (2)0.1008 (8)0.3169 (2)0.0398 (9)
C80.1958 (2)0.1615 (7)0.3117 (2)0.0401 (9)
C90.1990 (3)0.3714 (9)0.2727 (3)0.0490 (11)
H90.15980.49050.25180.059*
C100.2585 (3)0.4083 (11)0.2640 (3)0.0616 (13)
H100.25900.54920.23670.074*
C110.3180 (3)0.2347 (12)0.2961 (3)0.0677 (14)
H110.35870.26000.29070.081*
C120.3169 (3)0.0239 (12)0.3362 (3)0.0722 (16)
H120.3569−0.09230.35770.087*
C130.2559 (3)−0.0130 (10)0.3440 (3)0.0533 (12)
H130.2549−0.15460.37080.064*
C14−0.0945 (2)0.1484 (9)0.1595 (2)0.0451 (10)
H14−0.12030.31200.15540.054*
C15−0.1535 (3)−0.0560 (13)0.1154 (3)0.0727 (17)
H15A−0.1872−0.06650.13360.087*
H15B−0.1292−0.22340.12350.087*
C16−0.1994 (3)0.0014 (16)0.0314 (3)0.0846 (19)
H16A−0.2337−0.14130.00550.102*
H16B−0.22900.15710.02250.102*
C17−0.1502 (3)0.0381 (11)0.0011 (3)0.0638 (13)
H17B−0.18060.0862−0.05110.077*
H17A−0.1251−0.12410.00450.077*
C18−0.0922 (4)0.2463 (12)0.0436 (4)0.0774 (17)
H18A−0.11720.41250.03520.093*
H18B−0.05890.25790.02500.093*
C19−0.0464 (3)0.1896 (13)0.1269 (3)0.0683 (16)
H19A−0.01620.03560.13560.082*
H19B−0.01240.33350.15250.082*
C200.0677 (2)0.1637 (8)0.4557 (2)0.0426 (9)
H200.09620.31510.45620.051*
C210.1229 (3)−0.0486 (12)0.4978 (3)0.0685 (15)
H21A0.1533−0.07580.47630.082*
H21B0.0956−0.20810.49160.082*
C220.1746 (3)0.0067 (15)0.5810 (3)0.0805 (19)
H22A0.2054−0.14480.60550.097*
H22B0.20770.14980.58780.097*
C230.1303 (3)0.0742 (10)0.6167 (3)0.0650 (14)
H23B0.1019−0.07620.61550.078*
H23A0.16460.12180.66850.078*
C240.0777 (4)0.2951 (13)0.5762 (3)0.0771 (18)
H24A0.10680.45050.58290.093*
H24B0.04770.32710.59790.093*
C250.0261 (3)0.2433 (12)0.4937 (3)0.0654 (15)
H25A−0.00290.39870.46970.078*
H25B−0.00880.10660.48680.078*
H40.1046 (19)0.457 (7)0.3124 (19)0.015 (8)*
H60.014 (3)−0.052 (9)0.371 (3)0.037 (13)*
H5−0.038 (3)−0.067 (11)0.248 (3)0.062 (17)*
U11U22U33U12U13U23
P10.0447 (5)0.0336 (4)0.0472 (5)0.0016 (5)0.0276 (4)0.0017 (5)
O20.0546 (17)0.0351 (15)0.071 (2)0.0019 (13)0.0401 (17)0.0037 (14)
O30.061 (2)0.0334 (17)0.089 (3)0.0009 (14)0.047 (2)0.0017 (15)
N40.0453 (19)0.0326 (18)0.060 (2)0.0006 (15)0.0333 (18)−0.0008 (15)
N50.048 (2)0.035 (2)0.047 (2)0.0003 (16)0.0244 (18)0.0047 (16)
N60.054 (2)0.044 (2)0.046 (2)−0.0048 (18)0.0301 (19)−0.0002 (17)
C70.0389 (19)0.036 (2)0.045 (2)0.0004 (17)0.0228 (18)0.0000 (17)
C80.041 (2)0.0367 (19)0.042 (2)0.0018 (17)0.0213 (18)−0.0041 (17)
C90.052 (3)0.045 (2)0.059 (3)0.002 (2)0.035 (2)−0.003 (2)
C100.068 (3)0.062 (3)0.076 (3)−0.003 (3)0.053 (3)−0.003 (3)
C110.055 (3)0.074 (4)0.091 (4)−0.011 (3)0.050 (3)−0.019 (3)
C120.037 (3)0.076 (4)0.091 (4)0.011 (2)0.026 (3)−0.016 (3)
C130.046 (2)0.049 (3)0.057 (3)0.006 (2)0.022 (2)−0.002 (2)
C140.048 (2)0.042 (2)0.045 (3)0.0027 (19)0.024 (2)0.0002 (19)
C150.064 (3)0.103 (5)0.050 (3)−0.034 (3)0.030 (3)−0.006 (3)
C160.059 (3)0.116 (5)0.064 (4)−0.015 (3)0.023 (3)−0.008 (4)
C170.079 (3)0.057 (3)0.052 (3)0.003 (3)0.032 (3)0.004 (2)
C180.107 (4)0.070 (4)0.067 (4)−0.019 (4)0.054 (4)−0.003 (3)
C190.060 (3)0.091 (4)0.056 (3)−0.024 (3)0.033 (3)0.001 (3)
C200.045 (2)0.041 (2)0.045 (2)0.0004 (18)0.025 (2)0.0032 (18)
C210.074 (3)0.077 (4)0.057 (3)0.027 (3)0.037 (3)0.010 (3)
C220.065 (3)0.114 (5)0.051 (4)0.028 (4)0.022 (3)0.018 (3)
C230.083 (4)0.055 (3)0.053 (3)−0.001 (3)0.034 (3)0.004 (2)
C240.102 (5)0.075 (4)0.056 (3)0.017 (4)0.043 (3)0.000 (3)
C250.071 (3)0.078 (4)0.057 (3)0.023 (3)0.040 (3)0.006 (3)
P1—O21.468 (3)C16—C171.487 (8)
P1—N61.615 (4)C16—H16A0.9700
P1—N51.618 (4)C16—H16B0.9700
P1—N41.730 (4)C17—C181.509 (8)
O3—C71.225 (5)C17—H17B0.9700
N4—C71.356 (5)C17—H17A0.9700
N4—H40.90 (4)C18—C191.521 (9)
N5—C141.454 (6)C18—H18A0.9700
N5—H50.77 (5)C18—H18B0.9700
N6—C201.453 (6)C19—H19A0.9700
N6—H60.78 (4)C19—H19B0.9700
C7—C81.499 (6)C20—C211.496 (7)
C8—C91.382 (6)C20—C251.521 (6)
C8—C131.397 (6)C20—H200.9800
C9—C101.366 (7)C21—C221.525 (8)
C9—H90.9300C21—H21A0.9700
C10—C111.387 (8)C21—H21B0.9700
C10—H100.9300C22—C231.514 (8)
C11—C121.383 (9)C22—H22A0.9700
C11—H110.9300C22—H22B0.9700
C12—C131.389 (7)C23—C241.498 (8)
C12—H120.9300C23—H23B0.9700
C13—H130.9300C23—H23A0.9700
C14—C191.507 (7)C24—C251.511 (8)
C14—C151.513 (7)C24—H24A0.9700
C14—H140.9800C24—H24B0.9700
C15—C161.533 (8)C25—H25A0.9700
C15—H15A0.9700C25—H25B0.9700
C15—H15B0.9700
O2—P1—N6117.2 (2)C16—C17—C18111.1 (5)
O2—P1—N5115.7 (2)C16—C17—H17B109.4
N6—P1—N5102.73 (19)C18—C17—H17B109.4
O2—P1—N4103.77 (18)C16—C17—H17A109.4
N6—P1—N4107.5 (2)C18—C17—H17A109.4
N5—P1—N4109.79 (19)H17B—C17—H17A108.0
C7—N4—P1123.0 (3)C17—C18—C19111.6 (5)
C7—N4—H4113 (2)C17—C18—H18A109.3
P1—N4—H4124 (2)C19—C18—H18A109.3
C14—N5—P1125.4 (3)C17—C18—H18B109.3
C14—N5—H5120 (4)C19—C18—H18B109.3
P1—N5—H5109 (4)H18A—C18—H18B108.0
C20—N6—P1125.2 (3)C14—C19—C18112.8 (5)
C20—N6—H6113 (4)C14—C19—H19A109.0
P1—N6—H6112 (4)C18—C19—H19A109.0
O3—C7—N4122.2 (4)C14—C19—H19B109.0
O3—C7—C8120.2 (4)C18—C19—H19B109.0
N4—C7—C8117.6 (3)H19A—C19—H19B107.8
C9—C8—C13118.6 (4)N6—C20—C21112.4 (4)
C9—C8—C7123.4 (4)N6—C20—C25110.6 (4)
C13—C8—C7117.9 (4)C21—C20—C25111.4 (4)
C10—C9—C8121.6 (5)N6—C20—H20107.4
C10—C9—H9119.2C21—C20—H20107.4
C8—C9—H9119.2C25—C20—H20107.4
C9—C10—C11119.7 (5)C20—C21—C22113.7 (5)
C9—C10—H10120.1C20—C21—H21A108.8
C11—C10—H10120.1C22—C21—H21A108.8
C12—C11—C10120.2 (5)C20—C21—H21B108.8
C12—C11—H11119.9C22—C21—H21B108.8
C10—C11—H11119.9H21A—C21—H21B107.7
C11—C12—C13119.6 (5)C23—C22—C21111.5 (5)
C11—C12—H12120.2C23—C22—H22A109.3
C13—C12—H12120.2C21—C22—H22A109.3
C12—C13—C8120.3 (5)C23—C22—H22B109.3
C12—C13—H13119.9C21—C22—H22B109.3
C8—C13—H13119.9H22A—C22—H22B108.0
N5—C14—C19113.5 (4)C24—C23—C22110.6 (5)
N5—C14—C15108.8 (4)C24—C23—H23B109.5
C19—C14—C15110.2 (4)C22—C23—H23B109.5
N5—C14—H14108.1C24—C23—H23A109.5
C19—C14—H14108.1C22—C23—H23A109.5
C15—C14—H14108.1H23B—C23—H23A108.1
C14—C15—C16112.7 (5)C23—C24—C25112.7 (5)
C14—C15—H15A109.1C23—C24—H24A109.1
C16—C15—H15A109.1C25—C24—H24A109.1
C14—C15—H15B109.1C23—C24—H24B109.1
C16—C15—H15B109.1C25—C24—H24B109.1
H15A—C15—H15B107.8H24A—C24—H24B107.8
C17—C16—C15111.6 (5)C24—C25—C20113.2 (5)
C17—C16—H16A109.3C24—C25—H25A108.9
C15—C16—H16A109.3C20—C25—H25A108.9
C17—C16—H16B109.3C24—C25—H25B108.9
C15—C16—H16B109.3C20—C25—H25B108.9
H16A—C16—H16B108.0H25A—C25—H25B107.8
O2—P1—N4—C7−174.9 (4)C7—C8—C13—C12175.4 (4)
N6—P1—N4—C760.3 (4)P1—N5—C14—C1974.0 (5)
N5—P1—N4—C7−50.7 (4)P1—N5—C14—C15−162.9 (4)
O2—P1—N5—C1437.2 (4)N5—C14—C15—C16−177.7 (5)
N6—P1—N5—C14166.0 (4)C19—C14—C15—C16−52.6 (7)
N4—P1—N5—C14−79.8 (4)C14—C15—C16—C1754.8 (8)
O2—P1—N6—C20−61.0 (4)C15—C16—C17—C18−55.0 (8)
N5—P1—N6—C20171.1 (4)C16—C17—C18—C1955.1 (8)
N4—P1—N6—C2055.2 (4)N5—C14—C19—C18175.1 (5)
P1—N4—C7—O3−7.5 (6)C15—C14—C19—C1852.8 (7)
P1—N4—C7—C8170.5 (3)C17—C18—C19—C14−54.7 (8)
O3—C7—C8—C9147.1 (4)P1—N6—C20—C21−124.3 (4)
N4—C7—C8—C9−31.0 (6)P1—N6—C20—C25110.5 (4)
O3—C7—C8—C13−28.7 (6)N6—C20—C21—C22−174.9 (5)
N4—C7—C8—C13153.3 (4)C25—C20—C21—C22−50.1 (7)
C13—C8—C9—C101.2 (7)C20—C21—C22—C2353.6 (7)
C7—C8—C9—C10−174.5 (5)C21—C22—C23—C24−54.7 (7)
C8—C9—C10—C11−1.2 (8)C22—C23—C24—C2555.0 (7)
C9—C10—C11—C120.5 (8)C23—C24—C25—C20−52.9 (7)
C10—C11—C12—C130.1 (8)N6—C20—C25—C24175.3 (5)
C11—C12—C13—C8−0.1 (8)C21—C20—C25—C2449.5 (7)
C9—C8—C13—C12−0.6 (7)
D—H···AD—HH···AD···AD—H···A
N4—H4···O3i0.90 (4)2.16 (4)2.988 (4)154 (3)
N5—H5···O2ii0.77 (5)2.30 (6)3.019 (5)156 (6)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4⋯O3i0.90 (4)2.16 (4)2.988 (4)154 (3)
N5—H5⋯O2ii0.77 (5)2.30 (6)3.019 (5)156 (6)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  N,N'-Dicyclo-hexyl-N''-(4-nitro-benzo-yl)phospho-ric triamide.

Authors:  Fahimeh Sabbaghi; Mehrdad Pourayoubi; Maryam Toghraee; Vladimir Divjakovic
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