Literature DB >> 21754361

N,N'-Dibenzyl-N,N'-dimethyl-N''-(4-nitro-benzo-yl)phospho-ric triamide.

Mehrdad Pourayoubi, Mahnaz Rostami Chaijan, Laura Torre-Fernández, Santiago García-Granda.   

Abstract

The P atom in the title compound, C(23)H(25)N(4)O(4)P, is in a slightly distorted tetra-hedral coordination environment and the N atoms show sp(2) character. The phosphoryl group and the NH unit are syn with respect to each other. In the crystal, pairs of inter-molecular N-H⋯O(P) hydrogen bonds form centrosymmetric dimers.

Entities:  

Year:  2011        PMID: 21754361      PMCID: PMC3089276          DOI: 10.1107/S1600536811011275

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For phospho­rus compounds with general formula XP(O)[N(CH3)(CH2C6H5)]2, see: Gholivand et al. (2005 ▶). For bond lengths in a related structure, see: Sabbaghi et al. (2010 ▶). For hydrogen-bond motifs, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C23H25N4O4P M = 452.44 Triclinic, a = 8.3526 (5) Å b = 11.8150 (5) Å c = 12.2668 (4) Å α = 77.184 (3)° β = 81.289 (4)° γ = 71.928 (4)° V = 1117.70 (9) Å3 Z = 2 Cu Kα radiation μ = 1.41 mm−1 T = 297 K 0.24 × 0.14 × 0.05 mm

Data collection

Oxford Diffraction Xcalibur Ruby Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.941, T max = 1.000 8669 measured reflections 4203 independent reflections 3779 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.093 S = 1.05 4203 reflections 390 parameters All H-atom parameters refined Δρmax = 0.21 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811011275/ng5139sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811011275/ng5139Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H25N4O4PZ = 2
Mr = 452.44F(000) = 476
Triclinic, P1Dx = 1.344 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54180 Å
a = 8.3526 (5) ÅCell parameters from 5608 reflections
b = 11.8150 (5) Åθ = 3.7–70.5°
c = 12.2668 (4) ŵ = 1.41 mm1
α = 77.184 (3)°T = 297 K
β = 81.289 (4)°Prismatic, colorless
γ = 71.928 (4)°0.24 × 0.14 × 0.05 mm
V = 1117.70 (9) Å3
Oxford Diffraction Xcalibur Ruby Gemini diffractometer4203 independent reflections
Radiation source: Enhance (Cu) X-ray Source3779 reflections with I > 2σ(I)
graphiteRint = 0.025
Detector resolution: 10.2673 pixels mm-1θmax = 70.6°, θmin = 3.7°
ω scansh = −10→10
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −12→14
Tmin = 0.941, Tmax = 1.000l = −14→14
8669 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035All H-atom parameters refined
wR(F2) = 0.093w = 1/[σ2(Fo2) + (0.049P)2 + 0.1381P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
4203 reflectionsΔρmax = 0.21 e Å3
390 parametersΔρmin = −0.26 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0073 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.37947 (4)0.43216 (3)0.68154 (3)0.03514 (12)
O20.39241 (13)0.55008 (8)0.61457 (8)0.0441 (2)
O30.40102 (16)0.16957 (10)0.70306 (10)0.0570 (3)
O41.0449 (2)−0.09851 (14)0.30155 (13)0.0866 (5)
O50.9874 (2)−0.24087 (12)0.42737 (14)0.0867 (5)
N60.18214 (15)0.43519 (10)0.71762 (10)0.0422 (3)
N70.46802 (15)0.38121 (10)0.80040 (10)0.0415 (3)
N80.48310 (16)0.32916 (10)0.59984 (10)0.0404 (3)
N90.9666 (2)−0.13399 (13)0.38622 (13)0.0594 (4)
C10−0.08796 (18)0.59948 (13)0.70707 (13)0.0455 (3)
C11−0.2562 (2)0.61378 (15)0.69736 (16)0.0559 (4)
C12−0.3838 (2)0.69259 (18)0.7548 (2)0.0693 (6)
C13−0.3441 (3)0.75656 (19)0.82172 (19)0.0718 (6)
C14−0.1776 (3)0.7439 (2)0.8315 (2)0.0717 (5)
C15−0.0499 (2)0.66649 (16)0.77376 (17)0.0587 (4)
C160.0512 (2)0.51473 (15)0.64516 (14)0.0494 (4)
C170.1226 (2)0.34870 (15)0.80655 (16)0.0537 (4)
C180.3946 (3)0.44794 (17)0.89219 (14)0.0563 (4)
C190.6514 (2)0.32321 (15)0.80428 (14)0.0484 (3)
C200.69385 (18)0.22357 (14)0.90560 (12)0.0451 (3)
C210.7774 (2)0.2365 (2)0.98905 (15)0.0615 (4)
C220.8215 (3)0.1426 (3)1.08008 (17)0.0796 (6)
C230.7830 (3)0.0367 (2)1.08917 (18)0.0742 (6)
C240.7001 (3)0.02349 (18)1.00715 (18)0.0697 (5)
C250.6558 (3)0.11582 (16)0.91598 (16)0.0592 (4)
C260.48804 (18)0.20940 (12)0.62439 (11)0.0402 (3)
C270.61200 (18)0.12548 (12)0.55456 (11)0.0392 (3)
C280.7086 (2)0.16247 (13)0.45913 (12)0.0478 (4)
C290.8241 (2)0.07733 (14)0.40268 (13)0.0526 (4)
C300.8402 (2)−0.04361 (13)0.44417 (13)0.0461 (3)
C310.7468 (2)−0.08292 (14)0.53841 (15)0.0543 (4)
C320.6313 (2)0.00252 (14)0.59370 (15)0.0515 (4)
H11−0.278 (3)0.569 (2)0.6490 (18)0.069 (6)*
H12−0.499 (4)0.701 (2)0.745 (2)0.092 (7)*
H13−0.432 (3)0.809 (2)0.860 (2)0.087 (7)*
H14−0.154 (3)0.786 (2)0.882 (2)0.093 (8)*
H150.067 (3)0.6575 (19)0.7821 (18)0.070 (6)*
H16A0.104 (2)0.5613 (17)0.5845 (17)0.054 (5)*
H16B0.001 (3)0.4617 (19)0.6165 (17)0.061 (5)*
H17A0.041 (3)0.3951 (19)0.8615 (18)0.067 (6)*
H17B0.218 (3)0.292 (2)0.843 (2)0.076 (6)*
H17C0.070 (3)0.303 (2)0.7758 (19)0.076 (6)*
H18A0.276 (3)0.490 (2)0.885 (2)0.084 (7)*
H18B0.444 (3)0.512 (3)0.892 (2)0.096 (8)*
H18C0.407 (3)0.394 (2)0.964 (2)0.088 (7)*
H19A0.702 (3)0.3836 (19)0.8089 (17)0.061 (5)*
H19B0.693 (2)0.2926 (17)0.7372 (17)0.057 (5)*
H210.803 (3)0.312 (2)0.9826 (19)0.074 (6)*
H220.878 (4)0.154 (3)1.137 (3)0.117 (10)*
H230.810 (3)−0.029 (3)1.148 (2)0.096 (8)*
H240.672 (3)−0.051 (2)1.009 (2)0.078 (6)*
H250.600 (3)0.1054 (19)0.8612 (19)0.069 (6)*
H280.698 (2)0.2437 (19)0.4309 (17)0.061 (5)*
H290.894 (3)0.101 (2)0.3376 (19)0.070 (6)*
H310.766 (3)−0.165 (2)0.5660 (18)0.069 (6)*
H320.565 (3)−0.0228 (19)0.6597 (18)0.066 (6)*
H80.533 (2)0.3600 (17)0.5403 (17)0.049 (5)*
U11U22U33U12U13U23
P10.0438 (2)0.02572 (18)0.03071 (18)−0.00681 (13)0.00261 (13)−0.00327 (12)
O20.0586 (6)0.0298 (5)0.0380 (5)−0.0110 (4)0.0061 (4)−0.0035 (4)
O30.0742 (7)0.0362 (5)0.0535 (6)−0.0178 (5)0.0162 (5)−0.0060 (5)
O40.0973 (11)0.0691 (9)0.0630 (9)0.0154 (8)0.0114 (8)−0.0189 (7)
O50.1171 (13)0.0377 (7)0.0854 (10)0.0103 (7)−0.0052 (9)−0.0200 (7)
N60.0434 (6)0.0352 (6)0.0402 (6)−0.0065 (5)0.0002 (5)−0.0006 (5)
N70.0460 (6)0.0371 (6)0.0354 (6)−0.0048 (5)−0.0009 (5)−0.0064 (5)
N80.0530 (7)0.0292 (5)0.0337 (6)−0.0098 (5)0.0060 (5)−0.0044 (4)
N90.0701 (9)0.0463 (8)0.0522 (8)0.0072 (6)−0.0137 (7)−0.0185 (6)
C100.0418 (7)0.0386 (7)0.0505 (8)−0.0079 (6)−0.0075 (6)0.0004 (6)
C110.0500 (9)0.0452 (8)0.0674 (10)−0.0159 (7)−0.0141 (8)0.0087 (8)
C120.0398 (9)0.0600 (11)0.0866 (14)−0.0080 (8)−0.0010 (8)0.0178 (10)
C130.0578 (11)0.0591 (11)0.0732 (12)0.0025 (9)0.0135 (9)−0.0011 (10)
C140.0686 (12)0.0629 (11)0.0768 (13)−0.0026 (9)−0.0034 (10)−0.0243 (10)
C150.0469 (9)0.0555 (10)0.0723 (11)−0.0054 (7)−0.0089 (8)−0.0198 (8)
C160.0514 (8)0.0469 (8)0.0468 (8)−0.0072 (7)−0.0101 (7)−0.0086 (7)
C170.0516 (9)0.0425 (8)0.0578 (10)−0.0134 (7)0.0105 (8)−0.0012 (7)
C180.0698 (11)0.0528 (10)0.0400 (8)−0.0051 (8)−0.0041 (7)−0.0146 (7)
C190.0449 (8)0.0500 (9)0.0451 (8)−0.0141 (7)−0.0012 (6)0.0005 (7)
C200.0377 (7)0.0486 (8)0.0418 (7)−0.0068 (6)−0.0007 (5)−0.0036 (6)
C210.0593 (10)0.0786 (13)0.0509 (9)−0.0310 (9)−0.0070 (7)−0.0029 (8)
C220.0693 (12)0.1179 (19)0.0511 (10)−0.0358 (12)−0.0214 (9)0.0091 (11)
C230.0635 (11)0.0782 (14)0.0599 (11)−0.0073 (10)−0.0144 (9)0.0174 (10)
C240.0835 (14)0.0454 (10)0.0674 (12)−0.0087 (9)−0.0101 (10)0.0039 (8)
C250.0723 (11)0.0496 (9)0.0524 (9)−0.0128 (8)−0.0143 (8)−0.0037 (7)
C260.0502 (8)0.0306 (6)0.0365 (7)−0.0097 (6)−0.0020 (6)−0.0034 (5)
C270.0493 (7)0.0294 (6)0.0370 (7)−0.0073 (5)−0.0076 (6)−0.0056 (5)
C280.0675 (10)0.0283 (7)0.0388 (7)−0.0052 (6)−0.0007 (7)−0.0035 (6)
C290.0698 (10)0.0393 (8)0.0377 (7)−0.0044 (7)0.0022 (7)−0.0058 (6)
C300.0548 (8)0.0353 (7)0.0434 (8)0.0017 (6)−0.0126 (6)−0.0128 (6)
C310.0673 (10)0.0279 (7)0.0617 (10)−0.0059 (7)−0.0064 (8)−0.0069 (7)
C320.0605 (9)0.0320 (7)0.0558 (9)−0.0105 (6)0.0018 (7)−0.0042 (6)
P1—O21.4787 (10)C17—H17C0.95 (2)
P1—N61.6319 (13)C18—H18A0.97 (3)
P1—N71.6420 (12)C18—H18B0.96 (3)
P1—N81.6910 (11)C18—H18C0.97 (3)
O3—C261.2163 (18)C19—C201.510 (2)
O4—N91.206 (2)C19—H19A0.95 (2)
O5—N91.219 (2)C19—H19B0.95 (2)
N6—C171.462 (2)C20—C251.380 (3)
N6—C161.4684 (19)C20—C211.382 (2)
N7—C181.4663 (19)C21—C221.391 (3)
N7—C191.474 (2)C21—H210.96 (2)
N8—C261.3686 (18)C22—C231.364 (4)
N8—H80.85 (2)C22—H220.96 (3)
N9—C301.4729 (19)C23—C241.365 (3)
C10—C111.383 (2)C23—H230.93 (3)
C10—C151.385 (2)C24—C251.383 (3)
C10—C161.509 (2)C24—H240.97 (2)
C11—C121.395 (3)C25—H250.92 (2)
C11—H110.95 (2)C26—C271.5035 (19)
C12—C131.367 (3)C27—C281.385 (2)
C12—H120.96 (3)C27—C321.391 (2)
C13—C141.373 (3)C28—C291.388 (2)
C13—H130.94 (3)C28—H280.93 (2)
C14—C151.389 (3)C29—C301.377 (2)
C14—H140.96 (3)C29—H290.96 (2)
C15—H150.97 (2)C30—C311.369 (2)
C16—H16A0.96 (2)C31—C321.383 (2)
C16—H16B1.00 (2)C31—H310.92 (2)
C17—H17A1.01 (2)C32—H320.96 (2)
C17—H17B0.96 (2)
O2—P1—N6110.89 (6)H18A—C18—H18B104 (2)
O2—P1—N7118.67 (6)N7—C18—H18C110.9 (15)
N6—P1—N7103.85 (6)H18A—C18—H18C110 (2)
O2—P1—N8105.24 (6)H18B—C18—H18C108 (2)
N6—P1—N8113.52 (6)N7—C19—C20112.83 (12)
N7—P1—N8104.82 (6)N7—C19—H19A107.8 (12)
C17—N6—C16113.89 (13)C20—C19—H19A107.4 (12)
C17—N6—P1125.48 (11)N7—C19—H19B108.0 (11)
C16—N6—P1119.62 (10)C20—C19—H19B110.6 (12)
C18—N7—C19112.51 (13)H19A—C19—H19B110.2 (17)
C18—N7—P1117.29 (10)C25—C20—C21118.07 (16)
C19—N7—P1122.11 (10)C25—C20—C19121.29 (15)
C26—N8—P1124.98 (10)C21—C20—C19120.60 (16)
C26—N8—H8122.7 (12)C20—C21—C22120.3 (2)
P1—N8—H8112.4 (12)C20—C21—H21118.3 (14)
O4—N9—O5123.56 (15)C22—C21—H21121.4 (14)
O4—N9—C30118.42 (14)C23—C22—C21121.0 (2)
O5—N9—C30118.01 (16)C23—C22—H22120.3 (19)
C11—C10—C15118.31 (16)C21—C22—H22118.7 (19)
C11—C10—C16121.02 (15)C22—C23—C24119.00 (19)
C15—C10—C16120.65 (14)C22—C23—H23124.1 (17)
C10—C11—C12120.54 (18)C24—C23—H23116.9 (17)
C10—C11—H11116.3 (13)C23—C24—C25120.7 (2)
C12—C11—H11123.1 (13)C23—C24—H24121.8 (14)
C13—C12—C11120.40 (18)C25—C24—H24117.5 (14)
C13—C12—H12121.6 (16)C20—C25—C24120.95 (19)
C11—C12—H12118.0 (16)C20—C25—H25119.4 (13)
C12—C13—C14119.66 (19)C24—C25—H25119.6 (14)
C12—C13—H13119.4 (15)O3—C26—N8121.84 (13)
C14—C13—H13120.9 (16)O3—C26—C27120.11 (12)
C13—C14—C15120.3 (2)N8—C26—C27117.97 (12)
C13—C14—H14117.8 (16)C28—C27—C32119.72 (13)
C15—C14—H14121.8 (17)C28—C27—C26124.63 (12)
C10—C15—C14120.80 (18)C32—C27—C26115.62 (13)
C10—C15—H15119.7 (13)C27—C28—C29120.19 (14)
C14—C15—H15119.5 (13)C27—C28—H28121.6 (12)
N6—C16—C10112.55 (12)C29—C28—H28118.2 (12)
N6—C16—H16A108.2 (11)C30—C29—C28118.48 (15)
C10—C16—H16A109.3 (11)C30—C29—H29120.0 (13)
N6—C16—H16B107.3 (12)C28—C29—H29121.5 (13)
C10—C16—H16B108.7 (12)C31—C30—C29122.66 (14)
H16A—C16—H16B110.8 (16)C31—C30—N9118.90 (14)
N6—C17—H17A108.4 (12)C29—C30—N9118.42 (15)
N6—C17—H17B109.0 (14)C30—C31—C32118.49 (14)
H17A—C17—H17B110.9 (18)C30—C31—H31120.1 (13)
N6—C17—H17C110.5 (14)C32—C31—H31121.3 (14)
H17A—C17—H17C110.8 (18)C31—C32—C27120.47 (16)
H17B—C17—H17C107 (2)C31—C32—H32120.0 (13)
N7—C18—H18A110.9 (15)C27—C32—H32119.6 (13)
N7—C18—H18B113.1 (17)
O2—P1—N6—C17−162.93 (13)N7—C19—C20—C21−112.67 (17)
N7—P1—N6—C17−34.39 (15)C25—C20—C21—C220.2 (3)
N8—P1—N6—C1778.85 (14)C19—C20—C21—C22−177.67 (17)
O2—P1—N6—C1629.27 (13)C20—C21—C22—C23−0.2 (3)
N7—P1—N6—C16157.80 (11)C21—C22—C23—C240.1 (3)
N8—P1—N6—C16−88.96 (12)C22—C23—C24—C250.1 (3)
O2—P1—N7—C1867.60 (14)C21—C20—C25—C24−0.1 (3)
N6—P1—N7—C18−56.00 (14)C19—C20—C25—C24177.82 (17)
N8—P1—N7—C18−175.36 (13)C23—C24—C25—C20−0.1 (3)
O2—P1—N7—C19−78.73 (13)P1—N8—C26—O38.3 (2)
N6—P1—N7—C19157.67 (12)P1—N8—C26—C27−168.53 (10)
N8—P1—N7—C1938.30 (13)O3—C26—C27—C28175.52 (15)
O2—P1—N8—C26−173.12 (12)N8—C26—C27—C28−7.6 (2)
N6—P1—N8—C26−51.67 (14)O3—C26—C27—C32−6.7 (2)
N7—P1—N8—C2660.98 (14)N8—C26—C27—C32170.15 (14)
C15—C10—C11—C12−0.9 (2)C32—C27—C28—C290.0 (2)
C16—C10—C11—C12−179.86 (15)C26—C27—C28—C29177.69 (15)
C10—C11—C12—C13−0.2 (3)C27—C28—C29—C30−0.3 (3)
C11—C12—C13—C140.6 (3)C28—C29—C30—C310.2 (3)
C12—C13—C14—C15−0.1 (3)C28—C29—C30—N9−178.13 (15)
C11—C10—C15—C141.5 (3)O4—N9—C30—C31177.97 (17)
C16—C10—C15—C14−179.55 (18)O5—N9—C30—C31−2.8 (2)
C13—C14—C15—C10−1.0 (3)O4—N9—C30—C29−3.7 (2)
C17—N6—C16—C1065.91 (18)O5—N9—C30—C29175.58 (17)
P1—N6—C16—C10−124.93 (13)C29—C30—C31—C320.2 (3)
C11—C10—C16—N6−132.44 (15)N9—C30—C31—C32178.54 (15)
C15—C10—C16—N648.6 (2)C30—C31—C32—C27−0.5 (3)
C18—N7—C19—C2066.18 (18)C28—C27—C32—C310.4 (2)
P1—N7—C19—C20−146.04 (12)C26—C27—C32—C31−177.47 (15)
N7—C19—C20—C2569.5 (2)
D—H···AD—HH···AD···AD—H···A
N8—H8···O2i0.85 (2)2.07 (2)2.909 (2)169 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N8—H8⋯O2i0.85 (2)2.07 (2)2.909 (2)169 (2)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  N,N'-Dicyclo-hexyl-N''-(4-nitro-benzo-yl)phospho-ric triamide.

Authors:  Fahimeh Sabbaghi; Mehrdad Pourayoubi; Maryam Toghraee; Vladimir Divjakovic
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-13
  3 in total

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