Literature DB >> 21587518

N,N'-Dibenzyl-N''-(2,6-difluoro-benzo-yl)-N,N'-dimethyl-phospho-ric triamide.

Mehrdad Pourayoubi, Atekeh Tarahhomi, Arnold L Rheingold, James A Golen.   

Abstract

The phosphoryl and carbonyl groups in the title compound, C(23)H(24)F(2)N(3)O(2)P, are anti to each other. The P atom is in a tetra-hedral coordination environment and the environment of each N atom is essentially planar, the average bond angles at the two N atoms being 119.9 and 119.1°. The H atom of the C(=O)NHP(=O) group is involved in an inter-molecular -P=O⋯H-N- hydrogen bond, forming centrosymmetric dimers.

Entities:  

Year:  2010        PMID: 21587518      PMCID: PMC2983404          DOI: 10.1107/S1600536810035725

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Pourayoubi & Sabbaghi (2009 ▶); Sabbaghi et al. (2010 ▶).

Experimental

Crystal data

C23H24F2N3O2P M = 443.42 Triclinic, a = 9.9370 (11) Å b = 11.1093 (15) Å c = 11.5902 (14) Å α = 89.101 (4)° β = 67.826 (4)° γ = 71.664 (4)° V = 1116.9 (2) Å3 Z = 2 Mo Kα radiation μ = 0.16 mm−1 T = 200 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker SMART X2S benchtop CCD area-detector diffractometer Absorption correction: multi-scan SADABS (Bruker, 2005 ▶) T min = 0.952, T max = 0.968 13602 measured reflections 5173 independent reflections 3851 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.126 S = 1.03 5173 reflections 286 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810035725/ng5027sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810035725/ng5027Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H24F2N3O2PZ = 2
Mr = 443.42F(000) = 464
Triclinic, P1Dx = 1.318 Mg m3
a = 9.9370 (11) ÅMo Kα radiation, λ = 0.71073 Å
b = 11.1093 (15) ÅCell parameters from 5531 reflections
c = 11.5902 (14) Åθ = 2.4–27.8°
α = 89.101 (4)°µ = 0.16 mm1
β = 67.826 (4)°T = 200 K
γ = 71.664 (4)°BLOCK, colorless
V = 1116.9 (2) Å30.30 × 0.25 × 0.20 mm
Bruker SMART X2S benchtop CCD area-detector diffractometer5173 independent reflections
Radiation source: fine-focus sealed tube3851 reflections with I > 2σ(I)
curved silicon crystalRint = 0.036
phi and ω scansθmax = 27.8°, θmin = 2.4°
Absorption correction: multi-scan SADABS (Bruker, 2005)h = −13→13
Tmin = 0.952, Tmax = 0.968k = −14→14
13602 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0603P)2 + 0.2218P] where P = (Fo2 + 2Fc2)/3
5173 reflections(Δ/σ)max = 0.001
286 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.66485 (5)0.42270 (4)0.29906 (4)0.02461 (13)
F10.41237 (17)0.18210 (16)0.50507 (15)0.0723 (5)
F20.16095 (14)0.43844 (12)0.27352 (13)0.0532 (4)
O10.50833 (16)0.27969 (15)0.19272 (13)0.0445 (4)
O20.68882 (13)0.46617 (12)0.40757 (12)0.0323 (3)
N10.48905 (16)0.40601 (15)0.35526 (15)0.0277 (3)
N20.79630 (15)0.28474 (13)0.22927 (13)0.0246 (3)
N30.66719 (17)0.52094 (15)0.19333 (15)0.0358 (4)
C10.2810 (2)0.2390 (2)0.4858 (2)0.0449 (5)
C20.1464 (3)0.2189 (3)0.5632 (2)0.0583 (7)
H2A0.14430.16780.62990.070*
C30.0152 (3)0.2755 (3)0.5402 (2)0.0573 (7)
H3A−0.07850.26340.59240.069*
C40.0174 (2)0.3490 (2)0.4434 (2)0.0485 (6)
H4A−0.07330.38800.42820.058*
C50.1560 (2)0.3646 (2)0.36861 (19)0.0370 (5)
C60.2916 (2)0.31110 (18)0.38644 (17)0.0315 (4)
C70.4403 (2)0.32953 (18)0.30107 (17)0.0309 (4)
C80.86123 (19)0.24379 (17)0.09447 (16)0.0280 (4)
H8A0.82680.31730.05090.034*
H8B0.82120.17710.07920.034*
C91.03733 (19)0.19106 (16)0.03916 (16)0.0250 (4)
C101.1236 (2)0.22336 (17)0.09620 (17)0.0296 (4)
H10A1.07270.27970.17200.035*
C111.2842 (2)0.17395 (19)0.04339 (18)0.0341 (4)
H11A1.34190.19640.08360.041*
C121.3599 (2)0.09219 (18)−0.06744 (19)0.0358 (5)
H12A1.46930.0584−0.10330.043*
C131.2756 (2)0.06030 (19)−0.12524 (19)0.0393 (5)
H13A1.32700.0049−0.20170.047*
C141.1147 (2)0.10908 (18)−0.07202 (18)0.0336 (4)
H14A1.05750.0859−0.11230.040*
C150.8149 (2)0.18153 (18)0.30902 (18)0.0351 (4)
H15A0.92290.12610.27670.053*
H15B0.74970.13130.30840.053*
H15C0.78420.21840.39510.053*
C160.5493 (2)0.56887 (19)0.14191 (18)0.0382 (5)
H16A0.49170.50830.15350.046*
H16B0.60100.57050.05060.046*
C170.4345 (2)0.70157 (17)0.20021 (17)0.0290 (4)
C180.3442 (2)0.76890 (19)0.13718 (19)0.0360 (5)
H18A0.35380.73080.06040.043*
C190.2409 (2)0.8908 (2)0.1858 (2)0.0402 (5)
H19A0.17960.93550.14260.048*
C200.2266 (2)0.9478 (2)0.2971 (2)0.0414 (5)
H20A0.15681.03190.32970.050*
C210.3144 (2)0.88166 (19)0.36020 (18)0.0399 (5)
H21A0.30470.92020.43680.048*
C220.4176 (2)0.75831 (18)0.31215 (18)0.0344 (4)
H22A0.47670.71300.35690.041*
C230.7939 (3)0.5743 (2)0.1510 (3)0.0603 (7)
H23A0.84980.55370.05990.091*
H23B0.86460.53760.19250.091*
H23C0.75160.66730.17240.091*
H1A0.429 (2)0.442 (2)0.427 (2)0.038 (6)*
U11U22U33U12U13U23
P10.0173 (2)0.0247 (2)0.0261 (2)−0.00350 (17)−0.00496 (17)−0.00334 (17)
F10.0611 (9)0.0976 (12)0.0788 (11)−0.0319 (9)−0.0460 (8)0.0389 (9)
F20.0449 (7)0.0539 (8)0.0632 (9)−0.0087 (6)−0.0301 (7)0.0035 (7)
O10.0354 (8)0.0614 (10)0.0329 (8)−0.0183 (7)−0.0068 (6)−0.0151 (7)
O20.0208 (6)0.0398 (7)0.0315 (7)−0.0084 (5)−0.0061 (5)−0.0112 (6)
N10.0182 (7)0.0342 (8)0.0262 (8)−0.0076 (6)−0.0044 (6)−0.0074 (7)
N20.0206 (7)0.0242 (7)0.0231 (7)−0.0022 (6)−0.0064 (6)0.0009 (6)
N30.0259 (8)0.0294 (8)0.0446 (10)−0.0035 (7)−0.0107 (7)0.0096 (7)
C10.0398 (12)0.0603 (14)0.0426 (12)−0.0222 (11)−0.0200 (10)0.0059 (11)
C20.0607 (16)0.0738 (18)0.0467 (14)−0.0402 (14)−0.0133 (12)0.0104 (13)
C30.0415 (13)0.0695 (17)0.0565 (15)−0.0329 (13)−0.0022 (11)−0.0100 (13)
C40.0249 (10)0.0540 (14)0.0626 (15)−0.0107 (10)−0.0140 (10)−0.0199 (12)
C50.0305 (10)0.0391 (11)0.0407 (11)−0.0086 (8)−0.0152 (9)−0.0073 (9)
C60.0242 (9)0.0382 (10)0.0320 (10)−0.0110 (8)−0.0100 (8)−0.0080 (8)
C70.0229 (9)0.0361 (10)0.0314 (10)−0.0061 (8)−0.0110 (8)−0.0053 (8)
C80.0242 (9)0.0297 (9)0.0241 (9)−0.0045 (7)−0.0065 (7)−0.0026 (7)
C90.0220 (8)0.0247 (9)0.0249 (9)−0.0068 (7)−0.0062 (7)0.0030 (7)
C100.0291 (9)0.0305 (9)0.0268 (9)−0.0079 (8)−0.0100 (8)0.0001 (7)
C110.0277 (10)0.0394 (11)0.0377 (11)−0.0139 (8)−0.0135 (8)0.0078 (9)
C120.0202 (9)0.0349 (10)0.0431 (11)−0.0073 (8)−0.0042 (8)0.0062 (9)
C130.0289 (10)0.0364 (11)0.0366 (11)−0.0061 (8)0.0008 (8)−0.0093 (9)
C140.0275 (9)0.0347 (10)0.0341 (10)−0.0113 (8)−0.0063 (8)−0.0046 (8)
C150.0328 (10)0.0314 (10)0.0344 (10)−0.0050 (8)−0.0106 (8)0.0058 (8)
C160.0437 (11)0.0322 (10)0.0317 (10)−0.0024 (9)−0.0158 (9)0.0019 (8)
C170.0267 (9)0.0288 (9)0.0299 (9)−0.0078 (7)−0.0107 (8)0.0061 (8)
C180.0359 (10)0.0403 (11)0.0377 (11)−0.0136 (9)−0.0202 (9)0.0070 (9)
C190.0299 (10)0.0413 (12)0.0511 (13)−0.0066 (9)−0.0222 (9)0.0147 (10)
C200.0324 (10)0.0326 (11)0.0463 (12)−0.0009 (8)−0.0100 (9)0.0057 (9)
C210.0426 (12)0.0362 (11)0.0322 (11)−0.0068 (9)−0.0103 (9)0.0014 (9)
C220.0364 (10)0.0304 (10)0.0323 (10)−0.0030 (8)−0.0158 (8)0.0060 (8)
C230.0362 (12)0.0495 (14)0.0853 (19)−0.0157 (11)−0.0129 (12)0.0317 (13)
P1—O21.4796 (13)C10—H10A0.9500
P1—N31.6266 (16)C11—C121.385 (3)
P1—N21.6405 (14)C11—H11A0.9500
P1—N11.6886 (15)C12—C131.377 (3)
F1—C11.360 (2)C12—H12A0.9500
F2—C51.359 (2)C13—C141.397 (3)
O1—C71.219 (2)C13—H13A0.9500
N1—C71.362 (2)C14—H14A0.9500
N1—H1A0.83 (2)C15—H15A0.9800
N2—C81.463 (2)C15—H15B0.9800
N2—C151.471 (2)C15—H15C0.9800
N3—C161.462 (2)C16—C171.524 (3)
N3—C231.474 (3)C16—H16A0.9900
C1—C61.383 (3)C16—H16B0.9900
C1—C21.386 (3)C17—C221.380 (3)
C2—C31.380 (4)C17—C181.397 (3)
C2—H2A0.9500C18—C191.385 (3)
C3—C41.375 (3)C18—H18A0.9500
C3—H3A0.9500C19—C201.384 (3)
C4—C51.386 (3)C19—H19A0.9500
C4—H4A0.9500C20—C211.378 (3)
C5—C61.383 (3)C20—H20A0.9500
C6—C71.512 (3)C21—C221.396 (3)
C8—C91.529 (2)C21—H21A0.9500
C8—H8A0.9900C22—H22A0.9500
C8—H8B0.9900C23—H23A0.9800
C9—C141.389 (2)C23—H23B0.9800
C9—C101.389 (2)C23—H23C0.9800
C10—C111.395 (2)
O2—P1—N3114.81 (8)C12—C11—C10120.19 (18)
O2—P1—N2110.54 (7)C12—C11—H11A119.9
N3—P1—N2107.66 (8)C10—C11—H11A119.9
O2—P1—N1107.11 (8)C13—C12—C11119.55 (17)
N3—P1—N1107.24 (8)C13—C12—H12A120.2
N2—P1—N1109.34 (8)C11—C12—H12A120.2
C7—N1—P1126.79 (13)C12—C13—C14120.31 (18)
C7—N1—H1A116.4 (14)C12—C13—H13A119.8
P1—N1—H1A116.5 (14)C14—C13—H13A119.8
C8—N2—C15115.44 (14)C9—C14—C13120.73 (18)
C8—N2—P1125.15 (12)C9—C14—H14A119.6
C15—N2—P1116.63 (11)C13—C14—H14A119.6
C16—N3—C23116.19 (17)N2—C15—H15A109.5
C16—N3—P1126.13 (14)N2—C15—H15B109.5
C23—N3—P1117.53 (14)H15A—C15—H15B109.5
F1—C1—C6117.31 (18)N2—C15—H15C109.5
F1—C1—C2119.0 (2)H15A—C15—H15C109.5
C6—C1—C2123.7 (2)H15B—C15—H15C109.5
C3—C2—C1117.9 (2)N3—C16—C17114.79 (16)
C3—C2—H2A121.1N3—C16—H16A108.6
C1—C2—H2A121.1C17—C16—H16A108.6
C4—C3—C2121.4 (2)N3—C16—H16B108.6
C4—C3—H3A119.3C17—C16—H16B108.6
C2—C3—H3A119.3H16A—C16—H16B107.5
C3—C4—C5118.0 (2)C22—C17—C18118.77 (17)
C3—C4—H4A121.0C22—C17—C16122.46 (16)
C5—C4—H4A121.0C18—C17—C16118.76 (17)
F2—C5—C6117.05 (18)C19—C18—C17120.47 (19)
F2—C5—C4119.21 (19)C19—C18—H18A119.8
C6—C5—C4123.7 (2)C17—C18—H18A119.8
C5—C6—C1115.30 (18)C20—C19—C18120.37 (18)
C5—C6—C7121.65 (18)C20—C19—H19A119.8
C1—C6—C7123.04 (17)C18—C19—H19A119.8
O1—C7—N1123.93 (17)C21—C20—C19119.48 (19)
O1—C7—C6121.61 (16)C21—C20—H20A120.3
N1—C7—C6114.46 (15)C19—C20—H20A120.3
N2—C8—C9112.58 (14)C20—C21—C22120.33 (19)
N2—C8—H8A109.1C20—C21—H21A119.8
C9—C8—H8A109.1C22—C21—H21A119.8
N2—C8—H8B109.1C17—C22—C21120.56 (18)
C9—C8—H8B109.1C17—C22—H22A119.7
H8A—C8—H8B107.8C21—C22—H22A119.7
C14—C9—C10118.49 (16)N3—C23—H23A109.5
C14—C9—C8119.50 (15)N3—C23—H23B109.5
C10—C9—C8122.01 (15)H23A—C23—H23B109.5
C9—C10—C11120.73 (17)N3—C23—H23C109.5
C9—C10—H10A119.6H23A—C23—H23C109.5
C11—C10—H10A119.6H23B—C23—H23C109.5
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.83 (2)1.92 (2)2.752 (2)173 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O2i0.83 (2)1.92 (2)2.752 (2)173 (2)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N,N'-Dicyclo-hexyl-N''-(4-nitro-benzo-yl)phospho-ric triamide.

Authors:  Fahimeh Sabbaghi; Mehrdad Pourayoubi; Maryam Toghraee; Vladimir Divjakovic
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-13
  2 in total
  3 in total

1.  N-(2-Fluoro-benzo-yl)-N',N''-bis-(4-methyl-phen-yl)phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-19

2.  N,N'-Dibenzyl-N,N'-dimethyl-N''-(methyl-sulfon-yl)phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Sepideh Sadeghi Seraji; Giuseppe Bruno; Hadi Amiri Rudbari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-07

3.  N,N,N',N'-Tetra-benzyl-N''-(2,6-difluoro-benzo-yl)phospho-ric triamide.

Authors:  Akbar Raissi Shabari; Mehrdad Pourayoubi; Atekeh Tarahhomi; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-20
  3 in total

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