Literature DB >> 22059015

N-(2,6-Difluoro-benzo-yl)-P,P-bis-(pyrrolidin-1-yl)phosphinic amide.

Mehrdad Pourayoubi, Atekeh Tarahhomi, Arnold L Rheingold, James A Golen.   

Abstract

The phosphoryl and carbonyl groups in the title compound, C(15)H(20)F(2)N(3)O(2)P, are anti with respect to each other (but the P- and C-groups are separated by another atom) and the P atom is in a tetra-hedral coordination environment. Two C atoms in one of the pyrrolidinyl fragments are disordered over two sets of sites with occupancies of 0.746 (8) and 0.254 (8). The environments of the pyrrolidinyl N atoms show a slight deviation from planarity and none of the three N atoms is involved in any hydrogen bond as an acceptor. In the crystal, pairs of inter-molecular N-H⋯O hydrogen bonds form inversion dimers.

Entities:  

Year:  2011        PMID: 22059015      PMCID: PMC3200646          DOI: 10.1107/S1600536811033216

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond patterns in compounds containing a C(O)NHP(O) skeleton, see: Toghraee et al. (2011 ▶); Pourayoubi et al. (2011 ▶). For hydrogen-bond strength, see: Pourayoubi et al. (2011 ▶). For a related structure, see: Pourayoubi et al. (2010 ▶). For bond lengths, angles and torsion angles, see: Tarahhomi et al. (2011 ▶). For graph-set motifs, see Bernstein et al. (1995 ▶). For a related phospho­ric triamide, see: Sabbaghi et al. (2010 ▶).

Experimental

Crystal data

C15H20F2N3O2P M = 343.31 Monoclinic, a = 10.286 (3) Å b = 14.873 (4) Å c = 10.917 (3) Å β = 99.296 (3)° V = 1648.3 (7) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 100 K 0.40 × 0.30 × 0.25 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.925, T max = 0.952 13279 measured reflections 3776 independent reflections 2953 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.119 S = 1.05 3776 reflections 230 parameters 7 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.41 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811033216/jj2098sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033216/jj2098Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H20F2N3O2PF(000) = 720
Mr = 343.31Dx = 1.383 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7152 reflections
a = 10.286 (3) Åθ = 2.5–27.9°
b = 14.873 (4) ŵ = 0.20 mm1
c = 10.917 (3) ÅT = 100 K
β = 99.296 (3)°Block, colourless
V = 1648.3 (7) Å30.40 × 0.30 × 0.25 mm
Z = 4
Bruker APEXII CCD diffractometer3776 independent reflections
Radiation source: fine-focus sealed tube2953 reflections with I > 2σ(I)
graphiteRint = 0.043
φ and ω scansθmax = 27.9°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −13→13
Tmin = 0.925, Tmax = 0.952k = −19→14
13279 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0419P)2 + 1.0825P] where P = (Fo2 + 2Fc2)/3
3776 reflections(Δ/σ)max < 0.001
230 parametersΔρmax = 0.39 e Å3
7 restraintsΔρmin = −0.41 e Å3
Experimental. IR (KBr, ν, cm-1): 3062 (NH), 2846, 1684, 1622, 1465, 1442, 1284, 1218, 1181, 1092, 1008, 876, 800, 768, 708, 586.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
P10.58132 (4)0.60634 (4)0.14444 (5)0.02623 (15)
F10.06841 (11)0.66217 (8)0.14052 (12)0.0357 (3)
F20.33806 (10)0.40553 (8)0.20332 (11)0.0333 (3)
O10.34013 (13)0.65942 (10)0.26101 (14)0.0340 (4)
O20.65277 (12)0.54022 (11)0.07877 (12)0.0322 (4)
N10.42250 (14)0.57290 (13)0.12010 (15)0.0283 (4)
H1A0.402 (2)0.5349 (12)0.0604 (16)0.034*
N20.64224 (15)0.60885 (11)0.29142 (15)0.0260 (4)
N30.57871 (16)0.71092 (14)0.10109 (18)0.0396 (5)
C10.08224 (17)0.57212 (14)0.15613 (17)0.0249 (4)
C2−0.02954 (17)0.52080 (14)0.15101 (18)0.0282 (4)
H2A−0.11440.54780.13860.034*
C3−0.01492 (18)0.42859 (15)0.16440 (19)0.0304 (5)
H3A−0.09080.39190.16210.036*
C40.10900 (19)0.38887 (14)0.18117 (18)0.0284 (4)
H4A0.11900.32560.19040.034*
C50.21675 (17)0.44419 (14)0.18402 (17)0.0260 (4)
C60.20909 (16)0.53694 (13)0.17294 (16)0.0225 (4)
C70.32904 (17)0.59659 (14)0.18895 (17)0.0249 (4)
C80.6309 (2)0.68401 (14)0.3773 (2)0.0328 (5)
H8A0.55480.72290.34520.039*
H8B0.71200.72090.39000.039*
C90.6109 (3)0.63821 (17)0.4964 (2)0.0440 (6)
H9A0.51670.62440.49620.053*
H9B0.64380.67610.56950.053*
C100.6916 (3)0.55236 (17)0.4966 (2)0.0450 (6)
H10A0.66030.50570.54970.054*
H10B0.78620.56410.52650.054*
C110.6688 (2)0.52362 (14)0.36086 (18)0.0334 (5)
H11A0.74770.49340.33910.040*
H11B0.59260.48230.34310.040*
C120.7037 (2)0.75855 (18)0.0940 (3)0.0512 (7)
H12A0.73110.79530.16930.061*0.746 (8)
H12B0.77480.71520.08570.061*0.746 (8)
H12C0.76800.72050.05970.061*0.254 (8)
H12D0.74470.78400.17480.061*0.254 (8)
C130.6757 (6)0.8164 (5)−0.0173 (6)0.0601 (19)0.746 (8)
H13A0.68710.7829−0.09330.072*0.746 (8)
H13B0.73350.8700−0.00940.072*0.746 (8)
C140.5338 (4)0.8424 (3)−0.0195 (4)0.0520 (13)0.746 (8)
H14A0.49330.8646−0.10240.062*0.746 (8)
H14B0.52520.88900.04340.062*0.746 (8)
C13A0.6387 (15)0.8325 (12)0.0017 (13)0.043 (4)0.254 (8)
H13C0.60620.88190.04950.051*0.254 (8)
H13D0.70610.8577−0.04380.051*0.254 (8)
C14A0.5278 (10)0.7968 (8)−0.0887 (9)0.048 (3)0.254 (8)
H14C0.55590.7543−0.14920.057*0.254 (8)
H14D0.47040.8443−0.13180.057*0.254 (8)
C150.4701 (2)0.7512 (2)0.0127 (3)0.0557 (8)
H15A0.39100.76130.05180.067*0.746 (8)
H15B0.44620.7131−0.06200.067*0.746 (8)
H15C0.41950.79360.05650.067*0.254 (8)
H15D0.40950.7034−0.02500.067*0.254 (8)
U11U22U33U12U13U23
P10.0153 (2)0.0358 (3)0.0272 (3)−0.00273 (19)0.00216 (18)0.0048 (2)
F10.0267 (6)0.0268 (7)0.0548 (8)0.0024 (5)0.0109 (5)−0.0006 (6)
F20.0230 (5)0.0356 (7)0.0407 (7)0.0057 (5)0.0034 (5)0.0040 (5)
O10.0278 (7)0.0339 (9)0.0410 (8)−0.0075 (6)0.0079 (6)−0.0103 (7)
O20.0182 (6)0.0502 (10)0.0279 (7)−0.0018 (6)0.0030 (5)−0.0034 (7)
N10.0187 (7)0.0436 (11)0.0230 (8)−0.0054 (7)0.0046 (6)−0.0037 (8)
N20.0261 (8)0.0215 (9)0.0284 (8)−0.0003 (6)−0.0019 (6)0.0007 (7)
N30.0218 (8)0.0465 (12)0.0508 (12)0.0006 (8)0.0067 (7)0.0229 (10)
C10.0244 (8)0.0237 (10)0.0277 (9)0.0011 (7)0.0079 (7)−0.0022 (8)
C20.0179 (8)0.0351 (12)0.0325 (10)−0.0003 (8)0.0067 (7)−0.0042 (9)
C30.0251 (9)0.0355 (12)0.0318 (10)−0.0099 (8)0.0083 (8)−0.0042 (9)
C40.0305 (9)0.0264 (11)0.0291 (10)−0.0035 (8)0.0074 (8)0.0001 (8)
C50.0215 (8)0.0323 (11)0.0242 (9)0.0032 (8)0.0035 (7)0.0001 (8)
C60.0180 (8)0.0289 (11)0.0213 (9)−0.0024 (7)0.0055 (7)−0.0018 (8)
C70.0189 (8)0.0306 (11)0.0250 (9)−0.0026 (7)0.0027 (7)0.0014 (8)
C80.0306 (10)0.0233 (11)0.0408 (12)0.0019 (8)−0.0047 (8)−0.0049 (9)
C90.0621 (15)0.0340 (13)0.0371 (12)0.0038 (11)0.0115 (11)−0.0074 (10)
C100.0674 (16)0.0360 (14)0.0287 (11)0.0082 (12)−0.0009 (11)−0.0024 (10)
C110.0458 (12)0.0254 (11)0.0272 (10)0.0066 (9)0.0004 (9)−0.0005 (9)
C120.0343 (11)0.0389 (15)0.085 (2)−0.0063 (10)0.0237 (12)0.0122 (14)
C130.091 (4)0.038 (3)0.064 (3)−0.025 (3)0.052 (3)−0.008 (2)
C140.081 (3)0.040 (2)0.036 (2)−0.0016 (19)0.0119 (19)0.0143 (18)
C13A0.048 (8)0.046 (9)0.035 (7)−0.004 (6)0.010 (6)0.013 (6)
C14A0.072 (7)0.037 (6)0.032 (6)0.001 (5)0.004 (5)0.007 (5)
C150.0462 (13)0.068 (2)0.0523 (16)0.0092 (13)0.0052 (12)0.0353 (14)
P1—O21.4803 (16)C9—H9B0.9900
P1—N31.625 (2)C10—C111.524 (3)
P1—N21.6261 (17)C10—H10A0.9900
P1—N11.6872 (16)C10—H10B0.9900
F1—C11.355 (2)C11—H11A0.9900
F2—C51.359 (2)C11—H11B0.9900
O1—C71.215 (2)C12—C131.479 (7)
N1—C71.359 (2)C12—C13A1.566 (14)
N1—H1A0.863 (9)C12—H12A0.9900
N2—C81.476 (3)C12—H12B0.9900
N2—C111.480 (3)C12—H12C0.9891
N3—C151.480 (3)C12—H12D0.9903
N3—C121.481 (3)C13—C141.507 (7)
C1—C21.374 (3)C13—H13A0.9900
C1—C61.390 (2)C13—H13B0.9900
C2—C31.385 (3)C14—C151.571 (4)
C2—H2A0.9500C14—H14A0.9900
C3—C41.390 (3)C14—H14B0.9900
C3—H3A0.9500C13A—C14A1.481 (15)
C4—C51.377 (3)C13A—H13C0.9900
C4—H4A0.9500C13A—H13D0.9900
C5—C61.386 (3)C14A—C151.500 (9)
C6—C71.507 (2)C14A—H14C0.9900
C8—C91.512 (3)C14A—H14D0.9900
C8—H8A0.9900C15—H15A0.9900
C8—H8B0.9900C15—H15B0.9900
C9—C101.523 (3)C15—H15C0.9892
C9—H9A0.9900C15—H15D0.9898
O2—P1—N3118.75 (10)C13—C12—N3105.4 (3)
O2—P1—N2110.54 (8)N3—C12—C13A94.9 (6)
N3—P1—N2104.53 (10)C13—C12—H12A110.7
O2—P1—N1105.77 (9)N3—C12—H12A110.7
N3—P1—N1105.44 (9)C13A—C12—H12A100.4
N2—P1—N1111.79 (8)C13—C12—H12B110.7
C7—N1—P1126.16 (14)N3—C12—H12B110.7
C7—N1—H1A118.4 (15)C13A—C12—H12B130.1
P1—N1—H1A115.3 (15)H12A—C12—H12B108.8
C8—N2—C11110.53 (16)C13—C12—H12C94.3
C8—N2—P1125.92 (13)N3—C12—H12C112.7
C11—N2—P1119.72 (13)C13A—C12—H12C113.6
C15—N3—C12110.05 (19)H12A—C12—H12C120.9
C15—N3—P1123.53 (17)C13—C12—H12D120.5
C12—N3—P1119.96 (15)N3—C12—H12D112.6
F1—C1—C2118.29 (16)C13A—C12—H12D112.4
F1—C1—C6117.78 (16)H12B—C12—H12D96.8
C2—C1—C6123.90 (19)H12C—C12—H12D110.0
C1—C2—C3118.04 (17)C12—C13—C14102.8 (4)
C1—C2—H2A121.0C12—C13—H13A111.2
C3—C2—H2A121.0C14—C13—H13A111.2
C2—C3—C4121.09 (18)C12—C13—H13B111.2
C2—C3—H3A119.5C14—C13—H13B111.2
C4—C3—H3A119.5H13A—C13—H13B109.1
C5—C4—C3117.83 (19)C13—C14—C15102.3 (4)
C5—C4—H4A121.1C13—C14—H14A111.3
C3—C4—H4A121.1C15—C14—H14A111.3
F2—C5—C4117.79 (18)C13—C14—H14B111.3
F2—C5—C6118.20 (16)C15—C14—H14B111.3
C4—C5—C6123.97 (17)H14A—C14—H14B109.2
C5—C6—C1115.16 (16)C14A—C13A—C12112.3 (12)
C5—C6—C7122.82 (16)C14A—C13A—H13C109.1
C1—C6—C7121.82 (18)C12—C13A—H13C109.1
O1—C7—N1123.83 (17)C14A—C13A—H13D109.1
O1—C7—C6121.16 (17)C12—C13A—H13D109.1
N1—C7—C6114.99 (17)H13C—C13A—H13D107.9
N2—C8—C9103.94 (17)C13A—C14A—C1591.4 (9)
N2—C8—H8A111.0C13A—C14A—H14C113.4
C9—C8—H8A111.0C15—C14A—H14C113.4
N2—C8—H8B111.0C13A—C14A—H14D113.4
C9—C8—H8B111.0C15—C14A—H14D113.4
H8A—C8—H8B109.0H14C—C14A—H14D110.7
C8—C9—C10103.24 (19)N3—C15—C14A108.5 (4)
C8—C9—H9A111.1N3—C15—C14101.4 (2)
C10—C9—H9A111.1N3—C15—H15A111.5
C8—C9—H9B111.1C14A—C15—H15A134.5
C10—C9—H9B111.1C14—C15—H15A111.5
H9A—C9—H9B109.1N3—C15—H15B111.5
C9—C10—C11103.61 (18)C14A—C15—H15B74.1
C9—C10—H10A111.0C14—C15—H15B111.5
C11—C10—H10A111.0H15A—C15—H15B109.3
C9—C10—H10B111.0N3—C15—H15C110.1
C11—C10—H10B111.0C14A—C15—H15C111.7
H10A—C10—H10B109.0C14—C15—H15C80.1
N2—C11—C10104.16 (17)H15B—C15—H15C133.1
N2—C11—H11A110.9N3—C15—H15D109.8
C10—C11—H11A110.9C14A—C15—H15D108.4
N2—C11—H11B110.9C14—C15—H15D141.7
C10—C11—H11B110.9H15A—C15—H15D77.4
H11A—C11—H11B108.9H15C—C15—H15D108.3
O2—P1—N1—C7160.11 (17)P1—N1—C7—C6−162.13 (14)
N3—P1—N1—C7−73.26 (19)C5—C6—C7—O1−126.8 (2)
N2—P1—N1—C739.7 (2)C1—C6—C7—O147.8 (3)
O2—P1—N2—C8157.70 (16)C5—C6—C7—N151.5 (2)
N3—P1—N2—C828.81 (18)C1—C6—C7—N1−133.96 (19)
N1—P1—N2—C8−84.76 (18)C11—N2—C8—C9−16.4 (2)
O2—P1—N2—C11−46.49 (17)P1—N2—C8—C9141.28 (16)
N3—P1—N2—C11−175.38 (15)N2—C8—C9—C1033.4 (2)
N1—P1—N2—C1171.05 (17)C8—C9—C10—C11−38.2 (2)
O2—P1—N3—C1595.4 (2)C8—N2—C11—C10−7.4 (2)
N2—P1—N3—C15−140.9 (2)P1—N2—C11—C10−166.62 (15)
N1—P1—N3—C15−22.9 (2)C9—C10—C11—N228.0 (2)
O2—P1—N3—C12−53.6 (2)C15—N3—C12—C13−11.0 (4)
N2—P1—N3—C1270.2 (2)P1—N3—C12—C13141.7 (3)
N1—P1—N3—C12−171.80 (19)C15—N3—C12—C13A5.5 (7)
F1—C1—C2—C3178.66 (18)P1—N3—C12—C13A158.3 (6)
C6—C1—C2—C30.5 (3)N3—C12—C13—C1433.6 (5)
C1—C2—C3—C4−0.7 (3)C13A—C12—C13—C14−25 (2)
C2—C3—C4—C50.0 (3)C12—C13—C14—C15−42.7 (5)
C3—C4—C5—F2178.50 (17)C13—C12—C13A—C14A89 (3)
C3—C4—C5—C60.9 (3)N3—C12—C13A—C14A−35.5 (12)
F2—C5—C6—C1−178.62 (16)C12—C13A—C14A—C1547.7 (13)
C4—C5—C6—C1−1.1 (3)C12—N3—C15—C14A23.9 (6)
F2—C5—C6—C7−3.8 (3)P1—N3—C15—C14A−127.7 (5)
C4—C5—C6—C7173.80 (18)C12—N3—C15—C14−15.1 (3)
F1—C1—C6—C5−177.82 (17)P1—N3—C15—C14−166.7 (2)
C2—C1—C6—C50.3 (3)C13A—C14A—C15—N3−40.9 (10)
F1—C1—C6—C77.3 (3)C13A—C14A—C15—C1444.1 (8)
C2—C1—C6—C7−174.62 (18)C13—C14—C15—N335.1 (4)
P1—N1—C7—O116.1 (3)C13—C14—C15—C14A−70.4 (8)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2i0.86 (1)1.90 (1)2.757 (2)175 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O2i0.86 (1)1.90 (1)2.757 (2)175 (2)

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Different cyclic motifs in phosphoric triamides containing a C(O)NHP(O)(NH)2 skeleton and an R(2)(2)(10) graph set in three new compounds: a database analysis of hydrogen-bond strengths based on motifs.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Anahid Saneei; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr C       Date:  2011-06-29       Impact factor: 1.172

3.  N,N'-Dicyclo-hexyl-N''-(4-nitro-benzo-yl)phospho-ric triamide.

Authors:  Fahimeh Sabbaghi; Mehrdad Pourayoubi; Maryam Toghraee; Vladimir Divjakovic
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-13

4.  N,N'-Di-tert-butyl-N''-(2,6-difluoro-benzo-yl)phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13
  4 in total

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