Literature DB >> 21522414

N,N'-Dibenzyl-N''-(2-chloro-2,2-difluoro-acet-yl)-N,N'-dimethyl-phospho-ric triamide.

Akbar Raissi Shabari, Mehrdad Pourayoubi, Anahid Saneei.   

Abstract

In the title mol-ecule, C(18)H(21)ClF(2)N(3)O(2)P, the P=O and N-H groups are syn to each other. The P atom adopts a slightly distorted tetra-hedral environment and the N atoms of the tertiary amine groups are bonded in an essentially planar geometry. In the crystal, pairs of inter-molecular N-H⋯O(P) hydrogen bonds form centrosymmetric dimers.

Entities:  

Year:  2011        PMID: 21522414      PMCID: PMC3052170          DOI: 10.1107/S1600536811005423

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For metal complexes with phosphoryl donor ligands, see: Gholivand et al. (2010 ▶). For a polyoxometalate-based inorganic–organic compound containing a phosphoryl ligand, see: Niu et al. (1996 ▶). For phospho­ric triamide compounds having a C(=O)NHP(=O) skeleton, see: Pourayoubi & Sabbaghi (2009 ▶) and references cited therein. For bond lengths in related structures, see: Sabbaghi et al. (2010 ▶). For hydrogen-bond motifs, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶). For the synthesis of the starting material, CClF2C(O)NHP(O)Cl2, see: Iriarte et al. (2008 ▶).

Experimental

Crystal data

C18H21ClF2N3O2P M = 415.80 Triclinic, a = 10.3059 (9) Å b = 10.5030 (9) Å c = 10.9473 (9) Å α = 71.743 (2)° β = 67.294 (2)° γ = 63.265 (2)° V = 962.15 (14) Å3 Z = 2 Mo Kα radiation μ = 0.32 mm−1 T = 120 K 0.28 × 0.22 × 0.15 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1998 ▶) T min = 0.916, T max = 0.954 9258 measured reflections 4148 independent reflections 3359 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.111 S = 1.00 4148 reflections 247 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.37 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811005423/lh5205sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005423/lh5205Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H21ClF2N3O2PZ = 2
Mr = 415.80F(000) = 432
Triclinic, P1Dx = 1.435 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 10.3059 (9) ÅCell parameters from 3946 reflections
b = 10.5030 (9) Åθ = 2.3–29.1°
c = 10.9473 (9) ŵ = 0.32 mm1
α = 71.743 (2)°T = 120 K
β = 67.294 (2)°Prism, colourless
γ = 63.265 (2)°0.28 × 0.22 × 0.15 mm
V = 962.15 (14) Å3
Bruker SMART 1000 CCD area-detector diffractometer4148 independent reflections
Radiation source: fine-focus sealed tube3359 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 27.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1998)h = −13→13
Tmin = 0.916, Tmax = 0.954k = −13→13
9258 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: mixed
wR(F2) = 0.111H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0309P)2 + 1.6759P] where P = (Fo2 + 2Fc2)/3
4148 reflections(Δ/σ)max < 0.001
247 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.24133 (6)0.55399 (6)0.07097 (5)0.01766 (13)
Cl10.40224 (7)0.93801 (7)−0.06620 (6)0.03255 (16)
F10.45008 (15)0.79512 (15)0.15810 (14)0.0304 (3)
F20.25207 (16)0.99322 (15)0.16926 (15)0.0346 (3)
O10.37544 (16)0.44767 (15)−0.00684 (15)0.0207 (3)
O20.09472 (17)0.85802 (17)0.16326 (17)0.0290 (4)
N10.11179 (19)0.66717 (19)−0.00324 (17)0.0194 (4)
N20.1560 (2)0.47741 (19)0.21311 (17)0.0205 (4)
N30.3102 (2)0.66075 (19)0.09736 (18)0.0197 (4)
H3N0.40880.62970.07310.039 (8)*
C1−0.0432 (3)0.6755 (3)0.0358 (2)0.0300 (5)
H1A−0.06780.6791−0.04350.045*
H1B−0.11290.76300.07510.045*
H1C−0.05340.59020.10210.045*
C20.1497 (3)0.7723 (2)−0.1223 (2)0.0232 (4)
H2A0.24360.7795−0.12570.028*
H2B0.06710.8685−0.11250.028*
C30.1726 (2)0.7347 (2)−0.2540 (2)0.0215 (4)
C40.1249 (2)0.8454 (2)−0.3561 (2)0.0241 (5)
H4A0.06930.9420−0.33960.029*
C50.1583 (3)0.8152 (3)−0.4825 (2)0.0281 (5)
H5A0.12650.8912−0.55210.034*
C60.2378 (3)0.6744 (3)−0.5067 (2)0.0299 (5)
H6A0.26120.6537−0.59290.036*
C70.2835 (3)0.5633 (3)−0.4041 (2)0.0293 (5)
H7A0.33710.4666−0.42040.035*
C80.2511 (3)0.5929 (2)−0.2784 (2)0.0254 (5)
H8A0.28250.5165−0.20880.030*
C90.0398 (3)0.5614 (2)0.3182 (2)0.0254 (5)
H9A−0.04500.52820.35730.038*
H9B0.00310.66410.27900.038*
H9C0.08390.54780.38850.038*
C100.2044 (3)0.3195 (2)0.2526 (2)0.0235 (4)
H10A0.27790.27380.17360.028*
H10B0.11510.29270.28080.028*
C110.2766 (2)0.2604 (2)0.3657 (2)0.0217 (4)
C120.4040 (3)0.2854 (2)0.3528 (2)0.0249 (5)
H12A0.44650.33910.27200.030*
C130.4683 (3)0.2321 (2)0.4577 (2)0.0263 (5)
H13A0.55470.24970.44850.032*
C140.4077 (3)0.1535 (2)0.5757 (2)0.0267 (5)
H14A0.45210.11770.64730.032*
C150.2827 (3)0.1271 (2)0.5896 (2)0.0279 (5)
H15A0.24150.07230.67020.034*
C160.2175 (3)0.1812 (2)0.4847 (2)0.0250 (5)
H16A0.13090.16350.49480.030*
C170.2317 (2)0.7958 (2)0.1275 (2)0.0213 (4)
C180.3323 (3)0.8782 (2)0.1073 (2)0.0242 (5)
U11U22U33U12U13U23
P10.0166 (3)0.0174 (3)0.0179 (3)−0.0063 (2)−0.0047 (2)−0.0021 (2)
Cl10.0383 (3)0.0335 (3)0.0279 (3)−0.0217 (3)−0.0053 (2)−0.0007 (2)
F10.0315 (7)0.0306 (7)0.0366 (8)−0.0135 (6)−0.0154 (6)−0.0052 (6)
F20.0362 (8)0.0289 (7)0.0408 (8)−0.0132 (6)−0.0024 (6)−0.0182 (6)
O10.0184 (7)0.0203 (7)0.0230 (8)−0.0061 (6)−0.0055 (6)−0.0059 (6)
O20.0209 (8)0.0242 (8)0.0371 (9)−0.0052 (7)−0.0030 (7)−0.0108 (7)
N10.0179 (8)0.0201 (9)0.0189 (9)−0.0076 (7)−0.0057 (7)−0.0004 (7)
N20.0197 (9)0.0193 (9)0.0186 (8)−0.0077 (7)−0.0038 (7)0.0002 (7)
N30.0167 (8)0.0188 (9)0.0237 (9)−0.0056 (7)−0.0065 (7)−0.0044 (7)
C10.0195 (11)0.0406 (14)0.0272 (12)−0.0104 (10)−0.0092 (9)−0.0002 (10)
C20.0294 (11)0.0194 (10)0.0213 (11)−0.0098 (9)−0.0103 (9)0.0008 (8)
C30.0211 (10)0.0259 (11)0.0195 (10)−0.0124 (9)−0.0057 (8)−0.0013 (8)
C40.0208 (10)0.0270 (11)0.0239 (11)−0.0105 (9)−0.0070 (9)−0.0005 (9)
C50.0277 (12)0.0373 (13)0.0210 (11)−0.0146 (10)−0.0114 (9)0.0023 (9)
C60.0314 (12)0.0449 (14)0.0208 (11)−0.0212 (11)−0.0062 (9)−0.0060 (10)
C70.0321 (12)0.0300 (12)0.0285 (12)−0.0155 (10)−0.0046 (10)−0.0079 (10)
C80.0282 (11)0.0242 (11)0.0246 (11)−0.0125 (9)−0.0084 (9)0.0001 (9)
C90.0250 (11)0.0295 (12)0.0173 (10)−0.0114 (9)−0.0016 (9)−0.0023 (9)
C100.0275 (11)0.0203 (10)0.0243 (11)−0.0116 (9)−0.0102 (9)0.0016 (8)
C110.0236 (10)0.0171 (10)0.0237 (11)−0.0063 (8)−0.0084 (9)−0.0025 (8)
C120.0253 (11)0.0253 (11)0.0236 (11)−0.0119 (9)−0.0055 (9)−0.0020 (9)
C130.0222 (11)0.0258 (11)0.0317 (12)−0.0078 (9)−0.0096 (9)−0.0054 (9)
C140.0273 (11)0.0249 (11)0.0264 (11)−0.0042 (9)−0.0125 (9)−0.0051 (9)
C150.0308 (12)0.0236 (11)0.0241 (11)−0.0102 (10)−0.0080 (9)0.0026 (9)
C160.0242 (11)0.0245 (11)0.0268 (11)−0.0116 (9)−0.0092 (9)0.0013 (9)
C170.0235 (11)0.0205 (10)0.0192 (10)−0.0088 (9)−0.0054 (8)−0.0025 (8)
C180.0249 (11)0.0205 (10)0.0261 (11)−0.0072 (9)−0.0055 (9)−0.0068 (9)
P1—O11.4769 (15)C5—H5A0.9500
P1—N21.6241 (18)C6—C71.391 (3)
P1—N11.6308 (18)C6—H6A0.9500
P1—N31.7093 (18)C7—C81.387 (3)
Cl1—C181.768 (2)C7—H7A0.9500
F1—C181.345 (3)C8—H8A0.9500
F2—C181.336 (2)C9—H9A0.9800
O2—C171.215 (3)C9—H9B0.9800
N1—C11.453 (3)C9—H9C0.9800
N1—C21.471 (3)C10—C111.512 (3)
N2—C91.469 (3)C10—H10A0.9900
N2—C101.469 (3)C10—H10B0.9900
N3—C171.353 (3)C11—C161.387 (3)
N3—H3N0.8700C11—C121.399 (3)
C1—H1A0.9800C12—C131.387 (3)
C1—H1B0.9800C12—H12A0.9500
C1—H1C0.9800C13—C141.383 (3)
C2—C31.517 (3)C13—H13A0.9500
C2—H2A0.9900C14—C151.379 (3)
C2—H2B0.9900C14—H14A0.9500
C3—C41.393 (3)C15—C161.391 (3)
C3—C81.394 (3)C15—H15A0.9500
C4—C51.394 (3)C16—H16A0.9500
C4—H4A0.9500C17—C181.543 (3)
C5—C61.384 (4)
O1—P1—N2112.34 (9)C7—C8—C3120.0 (2)
O1—P1—N1117.13 (9)C7—C8—H8A120.0
N2—P1—N1107.02 (9)C3—C8—H8A120.0
O1—P1—N3105.06 (9)N2—C9—H9A109.5
N2—P1—N3110.57 (9)N2—C9—H9B109.5
N1—P1—N3104.38 (9)H9A—C9—H9B109.5
C1—N1—C2114.36 (17)N2—C9—H9C109.5
C1—N1—P1126.21 (15)H9A—C9—H9C109.5
C2—N1—P1119.42 (14)H9B—C9—H9C109.5
C9—N2—C10115.45 (17)N2—C10—C11113.28 (18)
C9—N2—P1121.56 (14)N2—C10—H10A108.9
C10—N2—P1122.42 (15)C11—C10—H10A108.9
C17—N3—P1127.29 (15)N2—C10—H10B108.9
C17—N3—H3N117.5C11—C10—H10B108.9
P1—N3—H3N114.0H10A—C10—H10B107.7
N1—C1—H1A109.5C16—C11—C12118.6 (2)
N1—C1—H1B109.5C16—C11—C10120.9 (2)
H1A—C1—H1B109.5C12—C11—C10120.59 (19)
N1—C1—H1C109.5C13—C12—C11120.2 (2)
H1A—C1—H1C109.5C13—C12—H12A119.9
H1B—C1—H1C109.5C11—C12—H12A119.9
N1—C2—C3114.05 (17)C14—C13—C12120.4 (2)
N1—C2—H2A108.7C14—C13—H13A119.8
C3—C2—H2A108.7C12—C13—H13A119.8
N1—C2—H2B108.7C15—C14—C13120.1 (2)
C3—C2—H2B108.7C15—C14—H14A120.0
H2A—C2—H2B107.6C13—C14—H14A120.0
C4—C3—C8119.4 (2)C14—C15—C16119.6 (2)
C4—C3—C2119.3 (2)C14—C15—H15A120.2
C8—C3—C2121.15 (19)C16—C15—H15A120.2
C3—C4—C5120.3 (2)C11—C16—C15121.2 (2)
C3—C4—H4A119.8C11—C16—H16A119.4
C5—C4—H4A119.8C15—C16—H16A119.4
C6—C5—C4120.1 (2)O2—C17—N3127.4 (2)
C6—C5—H5A120.0O2—C17—C18118.39 (19)
C4—C5—H5A120.0N3—C17—C18114.16 (18)
C5—C6—C7119.7 (2)F2—C18—F1107.18 (18)
C5—C6—H6A120.1F2—C18—C17110.49 (18)
C7—C6—H6A120.1F1—C18—C17111.98 (17)
C8—C7—C6120.5 (2)F2—C18—Cl1108.70 (15)
C8—C7—H7A119.8F1—C18—Cl1109.06 (15)
C6—C7—H7A119.8C17—C18—Cl1109.35 (15)
O1—P1—N1—C1115.12 (19)C6—C7—C8—C3−0.1 (3)
N2—P1—N1—C1−12.0 (2)C4—C3—C8—C71.2 (3)
N3—P1—N1—C1−129.24 (19)C2—C3—C8—C7−173.7 (2)
O1—P1—N1—C2−64.27 (18)C9—N2—C10—C11−61.8 (2)
N2—P1—N1—C2168.61 (15)P1—N2—C10—C11109.64 (19)
N3—P1—N1—C251.38 (17)N2—C10—C11—C16122.1 (2)
O1—P1—N2—C9167.42 (16)N2—C10—C11—C12−57.4 (3)
N1—P1—N2—C9−62.69 (18)C16—C11—C12—C13−0.2 (3)
N3—P1—N2—C950.40 (19)C10—C11—C12—C13179.2 (2)
O1—P1—N2—C10−3.55 (19)C11—C12—C13—C140.2 (3)
N1—P1—N2—C10126.34 (17)C12—C13—C14—C150.3 (3)
N3—P1—N2—C10−120.57 (16)C13—C14—C15—C16−0.6 (3)
O1—P1—N3—C17158.89 (18)C12—C11—C16—C15−0.1 (3)
N2—P1—N3—C17−79.68 (19)C10—C11—C16—C15−179.6 (2)
N1—P1—N3—C1735.1 (2)C14—C15—C16—C110.6 (4)
C1—N1—C2—C3−75.1 (2)P1—N3—C17—O213.3 (3)
P1—N1—C2—C3104.32 (19)P1—N3—C17—C18−164.20 (15)
N1—C2—C3—C4143.87 (19)O2—C17—C18—F217.7 (3)
N1—C2—C3—C8−41.2 (3)N3—C17—C18—F2−164.59 (18)
C8—C3—C4—C5−1.5 (3)O2—C17—C18—F1137.1 (2)
C2—C3—C4—C5173.5 (2)N3—C17—C18—F1−45.2 (2)
C3—C4—C5—C60.7 (3)O2—C17—C18—Cl1−101.9 (2)
C4—C5—C6—C70.4 (3)N3—C17—C18—Cl175.8 (2)
C5—C6—C7—C8−0.6 (4)
D—H···AD—HH···AD···AD—H···A
N3—H3N···O1i0.871.912.772 (3)174
Table 1

Selected bond angles (°)

O1—P1—N2112.34 (9)
O1—P1—N1117.13 (9)
N2—P1—N1107.02 (9)
O1—P1—N3105.06 (9)
N2—P1—N3110.57 (9)
N1—P1—N3104.38 (9)
C1—N1—C2114.36 (17)
C1—N1—P1126.21 (15)
C2—N1—P1119.42 (14)
C9—N2—C10115.45 (17)
C9—N2—P1121.56 (14)
C10—N2—P1122.42 (15)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3N⋯O1i0.871.912.772 (3)174

Symmetry code: (i) .

  4 in total

1.  A Novel Optical Complex between an Organic Substrate and a Polyoxometalate. Crystal and Molecular Structure of alpha-H(4)SiW(12)O(40).4HMPA.2H(2)O (HMPA = Hexamethylphosphoramide).

Authors: 
Journal:  Inorg Chem       Date:  1996-07-03       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  N,N'-Dicyclo-hexyl-N''-(4-nitro-benzo-yl)phospho-ric triamide.

Authors:  Fahimeh Sabbaghi; Mehrdad Pourayoubi; Maryam Toghraee; Vladimir Divjakovic
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-13
  4 in total
  1 in total

1.  N,N'-Dibenzyl-N''-(2-chloro-2,2-difluoro-acet-yl)phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Mojtaba Keikha; Jerry P Jasinski; Amanda C Keeley
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-26
  1 in total

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