Literature DB >> 21255825

The RNA exosome targets the AID cytidine deaminase to both strands of transcribed duplex DNA substrates.

Uttiya Basu1, Fei-Long Meng, Celia Keim, Veronika Grinstein, Evangelos Pefanis, Jennifer Eccleston, Tingting Zhang, Darienne Myers, Caitlyn R Wasserman, Duane R Wesemann, Kurt Januszyk, Richard I Gregory, Haiteng Deng, Christopher D Lima, Frederick W Alt.   

Abstract

Activation-induced cytidine deaminase (AID) initiates immunoglobulin (Ig) heavy-chain (IgH) class switch recombination (CSR) and Ig variable region somatic hypermutation (SHM) in B lymphocytes by deaminating cytidines on template and nontemplate strands of transcribed DNA substrates. However, the mechanism of AID access to the template DNA strand, particularly when hybridized to a nascent RNA transcript, has been an enigma. We now implicate the RNA exosome, a cellular RNA-processing/degradation complex, in targeting AID to both DNA strands. In B lineage cells activated for CSR, the RNA exosome associates with AID, accumulates on IgH switch regions in an AID-dependent fashion, and is required for optimal CSR. Moreover, both the cellular RNA exosome complex and a recombinant RNA exosome core complex impart robust AID- and transcription-dependent DNA deamination of both strands of transcribed SHM substrates in vitro. Our findings reveal a role for noncoding RNA surveillance machinery in generating antibody diversity.
Copyright © 2011 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21255825      PMCID: PMC3065114          DOI: 10.1016/j.cell.2011.01.001

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  80 in total

1.  R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells.

Authors:  Kefei Yu; Frederic Chedin; Chih-Lin Hsieh; Thomas E Wilson; Michael R Lieber
Journal:  Nat Immunol       Date:  2003-05       Impact factor: 25.606

2.  Mechanism of 5'-directed excision in human mismatch repair.

Authors:  Jochen Genschel; Paul Modrich
Journal:  Mol Cell       Date:  2003-11       Impact factor: 17.970

Review 3.  Immunity through DNA deamination.

Authors:  Michael S Neuberger; Reuben S Harris; Javier Di Noia; Svend K Petersen-Mahrt
Journal:  Trends Biochem Sci       Date:  2003-06       Impact factor: 13.807

Review 4.  Nucleic acid structures and enzymes in the immunoglobulin class switch recombination mechanism.

Authors:  Kefei Yu; Michael R Lieber
Journal:  DNA Repair (Amst)       Date:  2003-11-21

5.  A defined human system that supports bidirectional mismatch-provoked excision.

Authors:  Leonid Dzantiev; Nicoleta Constantin; Jochen Genschel; Ravi R Iyer; Peter M Burgers; Paul Modrich
Journal:  Mol Cell       Date:  2004-07-02       Impact factor: 17.970

6.  The influence of transcriptional orientation on endogenous switch region function.

Authors:  Reiko Shinkura; Ming Tian; Michele Smith; Katrin Chua; Yuko Fujiwara; Frederick W Alt
Journal:  Nat Immunol       Date:  2003-05       Impact factor: 25.606

7.  Transcription-coupled events associating with immunoglobulin switch region chromatin.

Authors:  Yukiko Nambu; Manabu Sugai; Hiroyuki Gonda; Chung-Gi Lee; Tomoya Katakai; Yasutoshi Agata; Yoshifumi Yokota; Akira Shimizu
Journal:  Science       Date:  2003-12-19       Impact factor: 47.728

8.  Transcription enhances AID-mediated cytidine deamination by exposing single-stranded DNA on the nontemplate strand.

Authors:  Almudena R Ramiro; Pete Stavropoulos; Mila Jankovic; Michel C Nussenzweig
Journal:  Nat Immunol       Date:  2003-05       Impact factor: 25.606

9.  Human activation-induced cytidine deaminase causes transcription-dependent, strand-biased C to U deaminations.

Authors:  Anjum Sohail; Joanna Klapacz; Mala Samaranayake; Asad Ullah; Ashok S Bhagwat
Journal:  Nucleic Acids Res       Date:  2003-06-15       Impact factor: 16.971

10.  AID mediates hypermutation by deaminating single stranded DNA.

Authors:  Sarah K Dickerson; Eleonora Market; Eva Besmer; F Nina Papavasiliou
Journal:  J Exp Med       Date:  2003-05-19       Impact factor: 14.307

View more
  164 in total

Review 1.  Immunoglobulin class-switch DNA recombination: induction, targeting and beyond.

Authors:  Zhenming Xu; Hong Zan; Egest J Pone; Thach Mai; Paolo Casali
Journal:  Nat Rev Immunol       Date:  2012-06-25       Impact factor: 53.106

Review 2.  Combinatorial mechanisms regulating AID-dependent DNA deamination: interacting proteins and post-translational modifications.

Authors:  Bao Q Vuong; Jayanta Chaudhuri
Journal:  Semin Immunol       Date:  2012-07-06       Impact factor: 11.130

Review 3.  Does DNA repair occur during somatic hypermutation?

Authors:  Huseyin Saribasak; Patricia J Gearhart
Journal:  Semin Immunol       Date:  2012-06-22       Impact factor: 11.130

Review 4.  Fail-safe transcription termination: Because one is never enough.

Authors:  Jean-François Lemay; François Bachand
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

Review 5.  The regulation and functions of the nuclear RNA exosome complex.

Authors:  Cornelia Kilchert; Sina Wittmann; Lidia Vasiljeva
Journal:  Nat Rev Mol Cell Biol       Date:  2016-01-04       Impact factor: 94.444

Review 6.  Complex regulation and function of activation-induced cytidine deaminase.

Authors:  Janet Stavnezer
Journal:  Trends Immunol       Date:  2011-04-13       Impact factor: 16.687

Review 7.  The RNA exosome and proteasome: common principles of degradation control.

Authors:  Debora L Makino; Felix Halbach; Elena Conti
Journal:  Nat Rev Mol Cell Biol       Date:  2013-08-29       Impact factor: 94.444

8.  Nuclear Proximity of Mtr4 to RNA Exosome Restricts DNA Mutational Asymmetry.

Authors:  Junghyun Lim; Pankaj Kumar Giri; David Kazadi; Brice Laffleur; Wanwei Zhang; Veronika Grinstein; Evangelos Pefanis; Lewis M Brown; Erik Ladewig; Ophélie Martin; Yuling Chen; Raul Rabadan; François Boyer; Gerson Rothschild; Michel Cogné; Eric Pinaud; Haiteng Deng; Uttiya Basu
Journal:  Cell       Date:  2017-04-20       Impact factor: 41.582

9.  The histone chaperone Spt6 is required for activation-induced cytidine deaminase target determination through H3K4me3 regulation.

Authors:  Nasim A Begum; Andre Stanlie; Mikiyo Nakata; Hideo Akiyama; Tasuku Honjo
Journal:  J Biol Chem       Date:  2012-07-26       Impact factor: 5.157

10.  Exo- and endoribonucleolytic activities of yeast cytoplasmic and nuclear RNA exosomes are dependent on the noncatalytic core and central channel.

Authors:  Elizabeth V Wasmuth; Christopher D Lima
Journal:  Mol Cell       Date:  2012-08-16       Impact factor: 17.970

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.