Literature DB >> 26273910

Fail-safe transcription termination: Because one is never enough.

Jean-François Lemay1, François Bachand1.   

Abstract

Termination of RNA polymerase II (RNAPII) transcription is a fundamental step of gene expression that involves the release of the nascent transcript and dissociation of RNAPII from the DNA template. As transcription termination is intimately linked to RNA 3' end processing, termination pathways have a key decisive influence on the fate of the transcribed RNA. Quite remarkably, when reaching the 3' end of genes, a substantial fraction of RNAPII fail to terminate transcription, requiring the contribution of alternative or "fail-safe" mechanisms of termination to release the polymerase. This point of view covers redundant mechanisms of transcription termination and how they relate to conventional termination models. In particular, we expand on recent findings that propose a reverse torpedo model of termination, in which the 3'5' exonucleolytic activity of the RNA exosome targets transcription events associated with paused and backtracked RNAPII.

Keywords:  3′ end processing; Nrd1; RNA exosome; RNA polymerase II; Rat1; TFIIS; backtracking; fail-safe termination; transcription termination

Mesh:

Substances:

Year:  2015        PMID: 26273910      PMCID: PMC4615224          DOI: 10.1080/15476286.2015.1073433

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  81 in total

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Authors:  Karen Adelman; Michael T Marr; Janis Werner; Abbie Saunders; Zhuoyu Ni; Erik D Andrulis; John T Lis
Journal:  Mol Cell       Date:  2005-01-07       Impact factor: 17.970

2.  Nature of the nucleosomal barrier to RNA polymerase II.

Authors:  Maria L Kireeva; Brynne Hancock; Gina H Cremona; Wendy Walter; Vasily M Studitsky; Mikhail Kashlev
Journal:  Mol Cell       Date:  2005-04-01       Impact factor: 17.970

Review 3.  Transcriptional interference--a crash course.

Authors:  Keith E Shearwin; Benjamin P Callen; J Barry Egan
Journal:  Trends Genet       Date:  2005-06       Impact factor: 11.639

4.  CTD-dependent dismantling of the RNA polymerase II elongation complex by the pre-mRNA 3'-end processing factor, Pcf11.

Authors:  Zhiqiang Zhang; Jianhua Fu; David S Gilmour
Journal:  Genes Dev       Date:  2005-07-01       Impact factor: 11.361

5.  The conserved AAUAAA hexamer of the poly(A) signal can act alone to trigger a stable decrease in RNA polymerase II transcription velocity.

Authors:  Anita Nag; Kazim Narsinh; Amir Kazerouninia; Harold G Martinson
Journal:  RNA       Date:  2006-06-14       Impact factor: 4.942

6.  The role of Rat1 in coupling mRNA 3'-end processing to transcription termination: implications for a unified allosteric-torpedo model.

Authors:  Weifei Luo; Arlen W Johnson; David L Bentley
Journal:  Genes Dev       Date:  2006-04-05       Impact factor: 11.361

7.  Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts.

Authors:  Lidia Vasiljeva; Stephen Buratowski
Journal:  Mol Cell       Date:  2006-01-20       Impact factor: 17.970

8.  Pause sites promote transcriptional termination of mammalian RNA polymerase II.

Authors:  Natalia Gromak; Steven West; Nick J Proudfoot
Journal:  Mol Cell Biol       Date:  2006-05       Impact factor: 4.272

9.  The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.

Authors:  Minkyu Kim; Nevan J Krogan; Lidia Vasiljeva; Oliver J Rando; Eduard Nedea; Jack F Greenblatt; Stephen Buratowski
Journal:  Nature       Date:  2004-11-25       Impact factor: 49.962

10.  Human 5' --> 3' exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites.

Authors:  Steven West; Natalia Gromak; Nick J Proudfoot
Journal:  Nature       Date:  2004-11-25       Impact factor: 49.962

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  6 in total

1.  The Nrd1-like protein Seb1 coordinates cotranscriptional 3' end processing and polyadenylation site selection.

Authors:  Jean-François Lemay; Samuel Marguerat; Marc Larochelle; Xiaochuan Liu; Rob van Nues; Judit Hunyadkürti; Mainul Hoque; Bin Tian; Sander Granneman; Jürg Bähler; François Bachand
Journal:  Genes Dev       Date:  2016-07-01       Impact factor: 11.361

2.  Comparative analysis of alternative polyadenylation in S. cerevisiae and S. pombe.

Authors:  Xiaochuan Liu; Mainul Hoque; Marc Larochelle; Jean-François Lemay; Nathan Yurko; James L Manley; François Bachand; Bin Tian
Journal:  Genome Res       Date:  2017-09-15       Impact factor: 9.043

3.  Structural basis of Nrd1-Nab3 heterodimerization.

Authors:  Belén Chaves-Arquero; Santiago Martínez-Lumbreras; Sergio Camero; Clara M Santiveri; Yasmina Mirassou; Ramón Campos-Olivas; Maria Ángeles Jiménez; Olga Calvo; José Manuel Pérez-Cañadillas
Journal:  Life Sci Alliance       Date:  2022-01-12

4.  Intraoperative Colonic Irrigation for Low Rectal Resections With Primary Anastomosis: A Fail-Safe Surgical Model.

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Review 5.  Host Shutoff in Influenza A Virus: Many Means to an End.

Authors:  Rachel Emily Levene; Marta Maria Gaglia
Journal:  Viruses       Date:  2018-09-05       Impact factor: 5.048

6.  RNA Polymerase II CTD phosphatase Rtr1 fine-tunes transcription termination.

Authors:  Jose F Victorino; Melanie J Fox; Whitney R Smith-Kinnaman; Sarah A Peck Justice; Katlyn H Burriss; Asha K Boyd; Megan A Zimmerly; Rachel R Chan; Gerald O Hunter; Yunlong Liu; Amber L Mosley
Journal:  PLoS Genet       Date:  2020-03-18       Impact factor: 5.917

  6 in total

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