Literature DB >> 23989960

The RNA exosome and proteasome: common principles of degradation control.

Debora L Makino1, Felix Halbach, Elena Conti.   

Abstract

Defective RNAs and proteins are swiftly degraded by cellular quality control mechanisms. A large fraction of their degradation is mediated by the exosome and the proteasome. These complexes have a similar architectural framework based on cylindrical, hollow structures that are conserved from bacteria and archaea to eukaryotes. Mechanistic similarities have also been identified for how RNAs and proteins are channelled into these structures and prepared for degradation. Insights gained from studies of the proteasome should now set the stage for elucidating the regulation, assembly and small-molecule inhibition of the exosome.

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Year:  2013        PMID: 23989960     DOI: 10.1038/nrm3657

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  98 in total

1.  Poly(A) tail-dependent exonuclease AtRrp41p from Arabidopsis thaliana rescues 5.8 S rRNA processing and mRNA decay defects of the yeast ski6 mutant and is found in an exosome-sized complex in plant and yeast cells.

Authors:  J A Chekanova; R J Shaw; M A Wills; D A Belostotsky
Journal:  J Biol Chem       Date:  2000-10-20       Impact factor: 5.157

Review 2.  Proteolysis: from the lysosome to ubiquitin and the proteasome.

Authors:  Aaron Ciechanover
Journal:  Nat Rev Mol Cell Biol       Date:  2005-01       Impact factor: 94.444

3.  Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3' end formation.

Authors:  M W Briggs; K T Burkard; J S Butler
Journal:  J Biol Chem       Date:  1998-05-22       Impact factor: 5.157

Review 4.  The ubiquitin system.

Authors:  A Hershko; A Ciechanover
Journal:  Annu Rev Biochem       Date:  1998       Impact factor: 23.643

Review 5.  Cellular strategies of protein quality control.

Authors:  Bryan Chen; Marco Retzlaff; Thomas Roos; Judith Frydman
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-08-01       Impact factor: 10.005

Review 6.  Antigen processing and presentation by the class I major histocompatibility complex.

Authors:  I A York; K L Rock
Journal:  Annu Rev Immunol       Date:  1996       Impact factor: 28.527

Review 7.  Functions of the cytoplasmic exosome.

Authors:  Daneen Schaeffer; Amanda Clark; A Alejandra Klauer; Borislava Tsanova; Ambro van Hoof
Journal:  Adv Exp Med Biol       Date:  2011       Impact factor: 2.622

8.  Structural and functional characterizations of the proteasome-activating protein PA26 from Trypanosoma brucei.

Authors:  Y Yao; L Huang; A Krutchinsky; M L Wong; K G Standing; A L Burlingame; C C Wang
Journal:  J Biol Chem       Date:  1999-11-26       Impact factor: 5.157

Review 9.  Genome-wide approaches to systematically identify substrates of the ubiquitin-proteasome pathway.

Authors:  Chang Liu; Vitnary Choe; Hai Rao
Journal:  Trends Biotechnol       Date:  2010-07-14       Impact factor: 19.536

10.  Transcriptome-wide analysis of exosome targets.

Authors:  Claudia Schneider; Grzegorz Kudla; Wiebke Wlotzka; Alex Tuck; David Tollervey
Journal:  Mol Cell       Date:  2012-09-20       Impact factor: 17.970

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  37 in total

1.  RNA degradation paths in a 12-subunit nuclear exosome complex.

Authors:  Debora Lika Makino; Benjamin Schuch; Elisabeth Stegmann; Marc Baumgärtner; Claire Basquin; Elena Conti
Journal:  Nature       Date:  2015-07-29       Impact factor: 49.962

2.  Telling right from wrong in life - cellular quality control.

Authors:  Georg Stoecklin; Bernd Bukau
Journal:  Nat Rev Mol Cell Biol       Date:  2013-10       Impact factor: 94.444

3.  The exosome-binding factors Rrp6 and Rrp47 form a composite surface for recruiting the Mtr4 helicase.

Authors:  Benjamin Schuch; Monika Feigenbutz; Debora L Makino; Sebastian Falk; Claire Basquin; Phil Mitchell; Elena Conti
Journal:  EMBO J       Date:  2014-10-15       Impact factor: 11.598

4.  Crystal structures of CRISPR-associated Csx3 reveal a manganese-dependent deadenylation exoribonuclease.

Authors:  Xinfu Yan; Wei Guo; Y Adam Yuan
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

Review 5.  The nuclear pore complex--structure and function at a glance.

Authors:  Greg Kabachinski; Thomas U Schwartz
Journal:  J Cell Sci       Date:  2015-02-01       Impact factor: 5.285

6.  Molecular Mechanism of Processive 3' to 5' RNA Translocation in the Active Subunit of the RNA Exosome Complex.

Authors:  Lela Vuković; Christophe Chipot; Debora L Makino; Elena Conti; Klaus Schulten
Journal:  J Am Chem Soc       Date:  2016-03-21       Impact factor: 15.419

Review 7.  Post-transcriptional regulation of gene expression and human disease.

Authors:  Anita H Corbett
Journal:  Curr Opin Cell Biol       Date:  2018-03-06       Impact factor: 8.382

8.  Biallelic variants in the RNA exosome gene EXOSC5 are associated with developmental delays, short stature, cerebellar hypoplasia and motor weakness.

Authors:  Anne Slavotinek; Doriana Misceo; Stephanie Htun; Linda Mathisen; Eirik Frengen; Michelle Foreman; Jennifer E Hurtig; Liz Enyenihi; Maria C Sterrett; Sara W Leung; Dina Schneidman-Duhovny; Juvianee Estrada-Veras; Jacque L Duncan; Charlotte A Haaxma; Erik-Jan Kamsteeg; Vivian Xia; Daniah Beleford; Yue Si; Ganka Douglas; Hans Einar Treidene; Ambro van Hoof; Milo B Fasken; Anita H Corbett
Journal:  Hum Mol Genet       Date:  2020-08-03       Impact factor: 6.150

9.  The RNA Exosome Channeling and Direct Access Conformations Have Distinct In Vivo Functions.

Authors:  Jaeil Han; Ambro van Hoof
Journal:  Cell Rep       Date:  2016-09-20       Impact factor: 9.423

10.  Nuclear RNA Exosome at 3.1 Å Reveals Substrate Specificities, RNA Paths, and Allosteric Inhibition of Rrp44/Dis3.

Authors:  John C Zinder; Elizabeth V Wasmuth; Christopher D Lima
Journal:  Mol Cell       Date:  2016-11-03       Impact factor: 17.970

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