Literature DB >> 16006514

Physical limits to biochemical signaling.

William Bialek1, Sima Setayeshgar.   

Abstract

Many crucial biological processes operate with surprisingly small numbers of molecules, and there is renewed interest in analyzing the impact of noise associated with these small numbers. Twenty-five years ago, Berg and Purcell showed that bacterial chemotaxis, where a single-celled organism must respond to small changes in concentration of chemicals outside the cell, is limited directly by molecule counting noise and that aspects of the bacteria's behavioral and computational strategies must be chosen to minimize the effects of this noise. Here, we revisit and generalize their arguments to estimate the physical limits to signaling processes within the cell and argue that recent experiments are consistent with performance approaching these limits.

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Year:  2005        PMID: 16006514      PMCID: PMC1177398          DOI: 10.1073/pnas.0504321102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

1.  An ultrasensitive bacterial motor revealed by monitoring signaling proteins in single cells.

Authors:  P Cluzel; M Surette; S Leibler
Journal:  Science       Date:  2000-03-03       Impact factor: 47.728

2.  Fluctuations and noise in kinetic systems. III. Cycling steady-state models.

Authors: 
Journal:  J Theor Biol       Date:  1975-11       Impact factor: 2.691

3.  Stochastic gene expression in a single cell.

Authors:  Michael B Elowitz; Arnold J Levine; Eric D Siggia; Peter S Swain
Journal:  Science       Date:  2002-08-16       Impact factor: 47.728

4.  Summing up the noise in gene networks.

Authors:  Johan Paulsson
Journal:  Nature       Date:  2004-01-29       Impact factor: 49.962

5.  Intrinsic and extrinsic contributions to stochasticity in gene expression.

Authors:  Peter S Swain; Michael B Elowitz; Eric D Siggia
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-17       Impact factor: 11.205

6.  From molecular noise to behavioural variability in a single bacterium.

Authors:  Ekaterina Korobkova; Thierry Emonet; Jose M G Vilar; Thomas S Shimizu; Philippe Cluzel
Journal:  Nature       Date:  2004-04-01       Impact factor: 49.962

7.  Gene regulation at the single-cell level.

Authors:  Nitzan Rosenfeld; Jonathan W Young; Uri Alon; Peter S Swain; Michael B Elowitz
Journal:  Science       Date:  2005-03-25       Impact factor: 47.728

8.  Physics of chemoreception.

Authors:  H C Berg; E M Purcell
Journal:  Biophys J       Date:  1977-11       Impact factor: 4.033

9.  Insect olfactory receptors.

Authors:  J Boeckh; K E Kaissling; D Schneider
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1965

10.  Fluctuations and noise in non-linear kinetic systems.

Authors:  Y D Chen
Journal:  J Theor Biol       Date:  1977-03-21       Impact factor: 2.691

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  135 in total

Review 1.  Responding to chemical gradients: bacterial chemotaxis.

Authors:  Victor Sourjik; Ned S Wingreen
Journal:  Curr Opin Cell Biol       Date:  2011-12-09       Impact factor: 8.382

2.  Differences in signalling by directly and indirectly binding ligands in bacterial chemotaxis.

Authors:  Silke Neumann; Clinton H Hansen; Ned S Wingreen; Victor Sourjik
Journal:  EMBO J       Date:  2010-09-10       Impact factor: 11.598

3.  External and internal constraints on eukaryotic chemotaxis.

Authors:  Danny Fuller; Wen Chen; Micha Adler; Alex Groisman; Herbert Levine; Wouter-Jan Rappel; William F Loomis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

4.  Information-optimal transcriptional response to oscillatory driving.

Authors:  Andrew Mugler; Aleksandra M Walczak; Chris H Wiggins
Journal:  Phys Rev Lett       Date:  2010-07-29       Impact factor: 9.161

5.  Physical limits on cellular sensing of spatial gradients.

Authors:  Bo Hu; Wen Chen; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2010-07-23       Impact factor: 9.161

6.  Interdependence of behavioural variability and response to small stimuli in bacteria.

Authors:  Heungwon Park; William Pontius; Calin C Guet; John F Marko; Thierry Emonet; Philippe Cluzel
Journal:  Nature       Date:  2010-11-14       Impact factor: 49.962

7.  Note: Boundary homogenization for a circle with periodic absorbing arcs. Exact expression for the effective trapping rate.

Authors:  Alexei T Skvortsov; Alexander M Berezhkovskii; Leonardo Dagdug
Journal:  J Chem Phys       Date:  2015-12-14       Impact factor: 3.488

8.  Limits to the precision of gradient sensing with spatial communication and temporal integration.

Authors:  Andrew Mugler; Andre Levchenko; Ilya Nemenman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-20       Impact factor: 11.205

9.  Physical limits on bacterial navigation in dynamic environments.

Authors:  Andrew M Hein; Douglas R Brumley; Francesco Carrara; Roman Stocker; Simon A Levin
Journal:  J R Soc Interface       Date:  2016-01       Impact factor: 4.118

10.  Information Thermodynamics for Time Series of Signal-Response Models.

Authors:  Andrea Auconi; Andrea Giansanti; Edda Klipp
Journal:  Entropy (Basel)       Date:  2019-02-14       Impact factor: 2.524

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