Literature DB >> 22107236

Effects of input noise on a simple biochemical switch.

Bo Hu1, David A Kessler, Wouter-Jan Rappel, Herbert Levine.   

Abstract

Many biological processes are controlled by biomolecular switches which themselves are regulated by various upstream chemical molecules (the input). Understanding how input noise affects the output stochastic switching process is of significant interest in various biophysical systems like gene regulation, chemosensing, and cell motility. Here, we propose an exactly solvable model where the noisy input signal arises from a simple birth-death process and directly regulates the transition rates of a downstream switch. We solve the joint master equations to analyze the statistical properties of the output switching process. Our results suggest that the conventional wisdom of an additive input-output noise rule fails to describe signaling systems containing a single molecular switch, and, instead, the most important effect of input noise is to effectively reduce the on rate of the switch.

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Year:  2011        PMID: 22107236      PMCID: PMC4465233          DOI: 10.1103/PhysRevLett.107.148101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  23 in total

1.  Noise in eukaryotic gene expression.

Authors:  William J Blake; Mads KAErn; Charles R Cantor; J J Collins
Journal:  Nature       Date:  2003-04-10       Impact factor: 49.962

2.  Stochastic gene expression in a single cell.

Authors:  Michael B Elowitz; Arnold J Levine; Eric D Siggia; Peter S Swain
Journal:  Science       Date:  2002-08-16       Impact factor: 47.728

3.  Intrinsic and extrinsic contributions to stochasticity in gene expression.

Authors:  Peter S Swain; Michael B Elowitz; Eric D Siggia
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-17       Impact factor: 11.205

4.  Physical limits on cellular sensing of spatial gradients.

Authors:  Bo Hu; Wen Chen; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2010-07-23       Impact factor: 9.161

5.  Physical limits to biochemical signaling.

Authors:  William Bialek; Sima Setayeshgar
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-08       Impact factor: 11.205

6.  How white noise generates power-law switching in bacterial flagellar motors.

Authors:  Yuhai Tu; G Grinstein
Journal:  Phys Rev Lett       Date:  2005-05-25       Impact factor: 9.161

7.  Quantifying noise levels of intercellular signals.

Authors:  Kai Wang; Wouter-Jan Rappel; Rex Kerr; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-06-05

8.  Cooperativity, sensitivity, and noise in biochemical signaling.

Authors:  William Bialek; Sima Setayeshgar
Journal:  Phys Rev Lett       Date:  2008-06-23       Impact factor: 9.161

9.  Phenomenological approach to eukaryotic chemotactic efficiency.

Authors:  Bo Hu; Danny Fuller; William F Loomis; Herbert Levine; Wouter-Jan Rappel
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-03-08

10.  Accuracy of direct gradient sensing by single cells.

Authors:  Robert G Endres; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-08       Impact factor: 11.205

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  8 in total

1.  Transient changes in intercellular protein variability identify sources of noise in gene expression.

Authors:  Abhyudai Singh
Journal:  Biophys J       Date:  2014-11-04       Impact factor: 4.033

2.  Noise and information transmission in promoters with multiple internal States.

Authors:  Georg Rieckh; Gašper Tkačik
Journal:  Biophys J       Date:  2014-03-04       Impact factor: 4.033

3.  How input noise limits biochemical sensing in ultrasensitive systems.

Authors:  Bo Hu; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-09-05

4.  Volumetric compression develops noise-driven single-cell heterogeneity.

Authors:  Xing Zhao; Jiliang Hu; Yiwei Li; Ming Guo
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-21       Impact factor: 12.779

5.  Coordinated switching of bacterial flagellar motors: evidence for direct motor-motor coupling?

Authors:  Bo Hu; Yuhai Tu
Journal:  Phys Rev Lett       Date:  2013-04-09       Impact factor: 9.161

6.  How input fluctuations reshape the dynamics of a biological switching system.

Authors:  Bo Hu; David A Kessler; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-12-20

7.  Know the Single-Receptor Sensing Limit? Think Again.

Authors:  Gerardo Aquino; Ned S Wingreen; Robert G Endres
Journal:  J Stat Phys       Date:  2015-11-23       Impact factor: 1.548

8.  The fidelity of dynamic signaling by noisy biomolecular networks.

Authors:  Clive G Bowsher; Margaritis Voliotis; Peter S Swain
Journal:  PLoS Comput Biol       Date:  2013-03-28       Impact factor: 4.475

  8 in total

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