Literature DB >> 17513372

Biased random walk by stochastic fluctuations of chemoattractant-receptor interactions at the lower limit of detection.

Peter J M van Haastert1, Marten Postma.   

Abstract

Binding of ligand to its receptor is a stochastic process that exhibits fluctuations in time and space. In chemotaxis, this leads to a noisy input signal. Therefore, in a gradient of chemoattractant, the cell may occasionally experience a "wrong" gradient of occupied receptors. We obtained a simple equation for P(pos), the probability that half of the cell closest to the source of chemoattractant has higher receptor occupancy than the opposite half of the cell. P(pos) depends on four factors, the gradient property delC/sq. root of C, the receptor characteristic R(t)/K(D), a time-averaging constant I, and nonreceptor noise sigma(B). We measured chemotaxis of Dictyostelium cells to known shallow gradients of cAMP and obtained direct estimates for these constants. Furthermore, we observed that in shallow gradients, the measured chemotaxis index is correlated with P(pos), which suggests that chemotaxis in shallow gradients is a pure biased random walk. From the observed chemotaxis and derived time-averaging constant, we deduce that the gradient transducing second messenger has a lifetime of 2-8 s and a diffusion rate constant of approximately 1 microm(2)/s. Potential candidates for such second messengers are discussed.

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Year:  2007        PMID: 17513372      PMCID: PMC1948060          DOI: 10.1529/biophysj.107.104356

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  45 in total

Review 1.  Chemokines in tissue-specific and microenvironment-specific lymphocyte homing.

Authors:  J J Campbell; E C Butcher
Journal:  Curr Opin Immunol       Date:  2000-06       Impact factor: 7.486

Review 2.  Making sense of it all: bacterial chemotaxis.

Authors:  George H Wadhams; Judith P Armitage
Journal:  Nat Rev Mol Cell Biol       Date:  2004-12       Impact factor: 94.444

3.  Physical limits to biochemical signaling.

Authors:  William Bialek; Sima Setayeshgar
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-08       Impact factor: 11.205

4.  Guanylyl cyclase protein and cGMP product independently control front and back of chemotaxing Dictyostelium cells.

Authors:  Douwe M Veltman; Peter J M Van Haastert
Journal:  Mol Biol Cell       Date:  2006-06-21       Impact factor: 4.138

5.  Chemotaxis in shallow gradients is mediated independently of PtdIns 3-kinase by biased choices between random protrusions.

Authors:  Natalie Andrew; Robert H Insall
Journal:  Nat Cell Biol       Date:  2007-01-14       Impact factor: 28.824

6.  Calcium oscillations in a triplet of pancreatic acinar cells.

Authors:  K Tsaneva-Atanasova; D I Yule; J Sneyd
Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

7.  Cyclic AMP diffusion coefficient in frog olfactory cilia.

Authors:  C Chen; T Nakamura; Y Koutalos
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

8.  Distinct roles of PI(3,4,5)P3 during chemoattractant signaling in Dictyostelium: a quantitative in vivo analysis by inhibition of PI3-kinase.

Authors:  Harriët M Loovers; Marten Postma; Ineke Keizer-Gunnink; Yi Elaine Huang; Peter N Devreotes; Peter J M van Haastert
Journal:  Mol Biol Cell       Date:  2006-01-18       Impact factor: 4.138

9.  Spatial sensing in fibroblasts mediated by 3' phosphoinositides.

Authors:  J M Haugh; F Codazzi; M Teruel; T Meyer
Journal:  J Cell Biol       Date:  2000-12-11       Impact factor: 10.539

10.  Dictyostelium discoideum chemotaxis: threshold for directed motion.

Authors:  Loling Song; Sharvari M Nadkarni; Hendrik U Bödeker; Carsten Beta; Albert Bae; Carl Franck; Wouter-Jan Rappel; William F Loomis; Eberhard Bodenschatz
Journal:  Eur J Cell Biol       Date:  2006-03-10       Impact factor: 4.492

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  44 in total

Review 1.  Microfluidic technologies for temporal perturbations of chemotaxis.

Authors:  Daniel Irimia
Journal:  Annu Rev Biomed Eng       Date:  2010-08-15       Impact factor: 9.590

2.  Bimodal analysis reveals a general scaling law governing nondirected and chemotactic cell motility.

Authors:  J Scott Gruver; Alka A Potdar; Junhwan Jeon; Jiqing Sai; Bridget Anderson; Donna Webb; Ann Richmond; Vito Quaranta; Peter T Cummings; Chang Y Chung
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

3.  Cell speed, persistence and information transmission during signal relay and collective migration.

Authors:  Colin P McCann; Paul W Kriebel; Carole A Parent; Wolfgang Losert
Journal:  J Cell Sci       Date:  2010-04-27       Impact factor: 5.285

4.  External and internal constraints on eukaryotic chemotaxis.

Authors:  Danny Fuller; Wen Chen; Micha Adler; Alex Groisman; Herbert Levine; Wouter-Jan Rappel; William F Loomis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

5.  A stochastic model for chemotaxis based on the ordered extension of pseudopods.

Authors:  Peter J M Van Haastert
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

6.  Physical limits on cellular sensing of spatial gradients.

Authors:  Bo Hu; Wen Chen; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2010-07-23       Impact factor: 9.161

7.  The stochastic dynamics of filopodial growth.

Authors:  Yueheng Lan; Garegin A Papoian
Journal:  Biophys J       Date:  2008-01-30       Impact factor: 4.033

8.  Adaptive-control model for neutrophil orientation in the direction of chemical gradients.

Authors:  Daniel Irimia; Gábor Balázsi; Nitin Agrawal; Mehmet Toner
Journal:  Biophys J       Date:  2009-05-20       Impact factor: 4.033

9.  Receptor noise limitations on chemotactic sensing.

Authors:  Wouter-Jan Rappel; Herbert Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-08       Impact factor: 11.205

10.  Receptor noise and directional sensing in eukaryotic chemotaxis.

Authors:  Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2008-06-02       Impact factor: 9.161

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