Literature DB >> 19705283

FM reconstruction of non-uniformly sampled protein NMR data at higher dimensions and optimization by distillation.

Sven G Hyberts1, Dominique P Frueh, Haribabu Arthanari, Gerhard Wagner.   

Abstract

Non-uniform sampling (NUS) enables recording of multidimensional NMR data at resolutions matching the resolving power of modern instruments without using excessive measuring time. However, in order to obtain satisfying results, efficient reconstruction methods are needed. Here we describe an optimized version of the Forward Maximum entropy (FM) reconstruction method, which can reconstruct up to three indirect dimensions. For complex datasets, such as NOESY spectra, the performance of the procedure is enhanced by a distillation procedure that reduces artifacts stemming from intense peaks.

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Year:  2009        PMID: 19705283      PMCID: PMC2858293          DOI: 10.1007/s10858-009-9368-1

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  30 in total

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3.  Projection-reconstruction technique for speeding up multidimensional NMR spectroscopy.

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4.  Accelerated acquisition of high resolution triple-resonance spectra using non-uniform sampling and maximum entropy reconstruction.

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Review 5.  Resolution and sensitivity of high field nuclear magnetic resonance spectroscopy.

Authors:  D Rovnyak; J C Hoch; A S Stern; G Wagner
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6.  Fast reconstruction of four-dimensional NMR spectra from plane projections.

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7.  Modern spectrum analysis in nuclear magnetic resonance: alternatives to the Fourier transform.

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8.  Application of nonlinear sampling schemes to COSY-type spectra.

Authors:  P Schmieder; A S Stern; G Wagner; J C Hoch
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9.  Improved resolution in triple-resonance spectra by nonlinear sampling in the constant-time domain.

Authors:  P Schmieder; A S Stern; G Wagner; J C Hoch
Journal:  J Biomol NMR       Date:  1994-07       Impact factor: 2.835

10.  Three-way decomposition of a complete 3D 15N-NOESY-HSQC.

Authors:  Aleksandras Gutmanas; Patrik Jarvoll; Vladislav Yu Orekhov; Martin Billeter
Journal:  J Biomol NMR       Date:  2002-11       Impact factor: 2.835

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  35 in total

1.  Enhanced sensitivity by nonuniform sampling enables multidimensional MAS NMR spectroscopy of protein assemblies.

Authors:  Sivakumar Paramasivam; Christopher L Suiter; Guangjin Hou; Shangjin Sun; Melissa Palmer; Jeffrey C Hoch; David Rovnyak; Tatyana Polenova
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2.  Iterative algorithm of discrete Fourier transform for processing randomly sampled NMR data sets.

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4.  A non-uniformly sampled 4D HCC(CO)NH-TOCSY experiment processed using maximum entropy for rapid protein sidechain assignment.

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5.  Sensitivity gains, linearity, and spectral reproducibility in nonuniformly sampled multidimensional MAS NMR spectra of high dynamic range.

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Review 6.  Biomolecular NMR data analysis.

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8.  A time-saving strategy for MAS NMR spectroscopy by combining nonuniform sampling and paramagnetic relaxation assisted condensed data collection.

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Review 9.  Magic angle spinning NMR of viruses.

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Review 10.  Perspectives in magnetic resonance: NMR in the post-FFT era.

Authors:  Sven G Hyberts; Haribabu Arthanari; Scott A Robson; Gerhard Wagner
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