Literature DB >> 15452430

Resolution and sensitivity of high field nuclear magnetic resonance spectroscopy.

D Rovnyak1, J C Hoch, A S Stern, G Wagner.   

Abstract

The arrival of very high field magnets and cryogenic circuitries, and the development of relaxation-optimized pulse sequences have added powerful tools for increasing sensitivity and resolution in NMR studies of biomacromolecules. The potential of these advances is not fully realized in practice, however, since current experimental protocols do not permit sufficient data sampling for optimal resolution in the indirect dimensions. Here we analyze quantitatively how increasing resolution in indirect dimensions affects the S/N ratio and compare this with currently used sampling routines. Optimal resolution would require sampling up to approximately 3 R (2)(-1), and the S/N reaches a maximum at approximately 1.2 R (2)(-1). Currently used data acquisition protocols rarely sample beyond 0.4 R (2)(-1), and extending evolution times would result in prohibitively long experiments. We show that a general solution to this problem is to use non-uniform sampling, where only a small subset of data points in the indirect sampling space are measured, and possibly different numbers of transients are collected for different evolution times. Coupled with modern methods of spectrum analysis, this strategy delivers substantially improved resolution and/or reduced measuring times compared to uniform sampling, without compromising sensitivity. Higher resolution in the indirect dimensions will facilitate the use of automated assignment programs.

Mesh:

Year:  2004        PMID: 15452430     DOI: 10.1023/B:JNMR.0000042946.04002.19

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  10 in total

1.  Modern spectrum analysis in multidimensional NMR spectroscopy: comparison of linear-prediction extrapolation and maximum-entropy reconstruction.

Authors:  Alan S Stern; Kuo-Bin Li; Jeffrey C Hoch
Journal:  J Am Chem Soc       Date:  2002-03-06       Impact factor: 15.419

2.  IBIS--a tool for automated sequential assignment of protein spectra from triple resonance experiments.

Authors:  Sven G Hyberts; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2003-08       Impact factor: 2.835

3.  Gifa V. 4: A complete package for NMR data set processing.

Authors:  J L Pons; T E Malliavin; M A Delsuc
Journal:  J Biomol NMR       Date:  1996-12       Impact factor: 2.835

4.  MUNIN: a new approach to multi-dimensional NMR spectra interpretation.

Authors:  V Y Orekhov; I V Ibraghimov; M Billeter
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

5.  A relational database for sequence-specific protein NMR data.

Authors:  B R Seavey; E A Farr; W M Westler; J L Markley
Journal:  J Biomol NMR       Date:  1991-09       Impact factor: 2.835

6.  A Metropolis Monte Carlo implementation of bayesian time-domain parameter estimation: application to coupling constant estimation from antiphase multiplets.

Authors:  M Andrec; J H Prestegard
Journal:  J Magn Reson       Date:  1998-02       Impact factor: 2.229

Review 7.  An account of NMR in structural biology.

Authors:  G Wagner
Journal:  Nat Struct Biol       Date:  1997-10

8.  Quantification of maximum-entropy spectrum reconstructions.

Authors:  P Schmieder; A S Stern; G Wagner; J C Hoch
Journal:  J Magn Reson       Date:  1997-04       Impact factor: 2.229

9.  Multiple-quantum magic-angle spinning spectroscopy using nonlinear sampling.

Authors:  David Rovnyak; Claudiu Filip; Boris Itin; Alan S Stern; Gerhard Wagner; Robert G Griffin; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2003-03       Impact factor: 2.229

10.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

  10 in total
  49 in total

1.  Enhanced sensitivity by nonuniform sampling enables multidimensional MAS NMR spectroscopy of protein assemblies.

Authors:  Sivakumar Paramasivam; Christopher L Suiter; Guangjin Hou; Shangjin Sun; Melissa Palmer; Jeffrey C Hoch; David Rovnyak; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-06-18       Impact factor: 2.991

2.  Performance tuning non-uniform sampling for sensitivity enhancement of signal-limited biological NMR.

Authors:  Melissa R Palmer; Broc R Wenrich; Phillip Stahlfeld; David Rovnyak
Journal:  J Biomol NMR       Date:  2014-03-29       Impact factor: 2.835

3.  Accurate determination of rates from non-uniformly sampled relaxation data.

Authors:  Matthew A Stetz; A Joshua Wand
Journal:  J Biomol NMR       Date:  2016-07-08       Impact factor: 2.835

4.  Fast acquisition of NMR spectra using Fourier transform of non-equispaced data.

Authors:  Dominique Marion
Journal:  J Biomol NMR       Date:  2005-06       Impact factor: 2.835

5.  Sampling of the NMR time domain along concentric rings.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Magn Reson       Date:  2006-10-27       Impact factor: 2.229

6.  Sensitivity of nonuniform sampling NMR.

Authors:  Melissa R Palmer; Christopher L Suiter; Geneive E Henry; James Rovnyak; Jeffrey C Hoch; Tatyana Polenova; David Rovnyak
Journal:  J Phys Chem B       Date:  2015-05-18       Impact factor: 2.991

7.  Nonuniform sampling and maximum entropy reconstruction in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Mehdi Mobli; Adam D Schuyler; Alan S Stern
Journal:  Acc Chem Res       Date:  2014-01-09       Impact factor: 22.384

Review 8.  Magic angle spinning NMR of viruses.

Authors:  Caitlin M Quinn; Manman Lu; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-02-16       Impact factor: 9.795

9.  Nitrogen detected TROSY at high field yields high resolution and sensitivity for protein NMR.

Authors:  Koh Takeuchi; Haribabu Arthanari; Ichio Shimada; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2015-10-23       Impact factor: 2.835

Review 10.  Perspectives in magnetic resonance: NMR in the post-FFT era.

Authors:  Sven G Hyberts; Haribabu Arthanari; Scott A Robson; Gerhard Wagner
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

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