Literature DB >> 25919197

Magic angle spinning NMR of viruses.

Caitlin M Quinn1, Manman Lu2, Christopher L Suiter3, Guangjin Hou4, Huilan Zhang5, Tatyana Polenova6.   

Abstract

Viruses, relatively simple pathogens, are able to replicate in many living organisms and to adapt to various environments. Conventional atomic-resolution structural biology techniques, X-ray crystallography and solution NMR spectroscopy provided abundant information on the structures of individual proteins and nucleic acids comprising viruses; however, viral assemblies are not amenable to analysis by these techniques because of their large size, insolubility, and inherent lack of long-range order. In this article, we review the recent advances in magic angle spinning NMR spectroscopy that enabled atomic-resolution analysis of structure and dynamics of large viral systems and give examples of several exciting case studies.
Copyright © 2015 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Bacteriophage; CA capsid; HIV-AIDS; Magic angle spinning; Viruses

Mesh:

Year:  2015        PMID: 25919197      PMCID: PMC4413014          DOI: 10.1016/j.pnmrs.2015.02.003

Source DB:  PubMed          Journal:  Prog Nucl Magn Reson Spectrosc        ISSN: 0079-6565            Impact factor:   9.795


  245 in total

1.  Signal enhancement for the sensitivity-limited solid state NMR experiments using a continuous, non-uniform acquisition scheme.

Authors:  Wei Qiang
Journal:  J Magn Reson       Date:  2011-08-30       Impact factor: 2.229

2.  Accelerated acquisition of high resolution triple-resonance spectra using non-uniform sampling and maximum entropy reconstruction.

Authors:  David Rovnyak; Dominique P Frueh; Mallika Sastry; Zhen-Yu J Sun; Alan S Stern; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Magn Reson       Date:  2004-09       Impact factor: 2.229

3.  Solid-state protein-structure determination with proton-detected triple-resonance 3D magic-angle-spinning NMR spectroscopy.

Authors:  Donghua H Zhou; John J Shea; Andrew J Nieuwkoop; W Trent Franks; Benjamin J Wylie; Charles Mullen; Dennis Sandoz; Chad M Rienstra
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

4.  A proton-detected 4D solid-state NMR experiment for protein structure determination.

Authors:  Matthias Huber; Sebastian Hiller; Paul Schanda; Matthias Ernst; Anja Böckmann; René Verel; Beat H Meier
Journal:  Chemphyschem       Date:  2011-02-15       Impact factor: 3.102

5.  Determination of the DNA sugar pucker using 13C NMR spectroscopy.

Authors:  R A Santos; P Tang; G S Harbison
Journal:  Biochemistry       Date:  1989-11-28       Impact factor: 3.162

Review 6.  To kill or be killed: how viruses interact with the cell death machinery.

Authors:  V Kaminskyy; B Zhivotovsky
Journal:  J Intern Med       Date:  2010-05       Impact factor: 8.989

7.  Magic angle spinning NMR investigation of influenza A M2(18-60): support for an allosteric mechanism of inhibition.

Authors:  Loren B Andreas; Matthew T Eddy; Rafal M Pielak; James Chou; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2010-08-18       Impact factor: 15.419

8.  Dynamics of reassembled thioredoxin studied by magic angle spinning NMR: snapshots from different time scales.

Authors:  Jun Yang; Maria Luisa Tasayco; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2009-09-30       Impact factor: 15.419

9.  Assignment of congested NMR spectra: carbonyl backbone enrichment via the Entner-Doudoroff pathway.

Authors:  Amir Goldbourt; Loren A Day; Ann E McDermott
Journal:  J Magn Reson       Date:  2007-08-17       Impact factor: 2.229

10.  Structure of full-length HIV-1 CA: a model for the mature capsid lattice.

Authors:  Barbie K Ganser-Pornillos; Anchi Cheng; Mark Yeager
Journal:  Cell       Date:  2007-10-05       Impact factor: 41.582

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  12 in total

1.  Mechanistic Insights into Microsecond Time-Scale Motion of Solid Proteins Using Complementary 15N and 1H Relaxation Dispersion Techniques.

Authors:  Petra Rovó; Colin A Smith; Diego Gauto; Bert L de Groot; Paul Schanda; Rasmus Linser
Journal:  J Am Chem Soc       Date:  2019-01-08       Impact factor: 15.419

2.  Toward Closing the Gap: Quantum Mechanical Calculations and Experimentally Measured Chemical Shifts of a Microcrystalline Lectin.

Authors:  Matthew Fritz; Caitlin M Quinn; Mingzhang Wang; Guangjin Hou; Xingyu Lu; Leonardus M I Koharudin; Tatyana Polenova; Angela M Gronenborn
Journal:  J Phys Chem B       Date:  2016-12-21       Impact factor: 2.991

3.  On the use of ultracentrifugal devices for routine sample preparation in biomolecular magic-angle-spinning NMR.

Authors:  Abhishek Mandal; Jennifer C Boatz; Travis B Wheeler; Patrick C A van der Wel
Journal:  J Biomol NMR       Date:  2017-02-22       Impact factor: 2.835

4.  19F Dynamic Nuclear Polarization at Fast Magic Angle Spinning for NMR of HIV-1 Capsid Protein Assemblies.

Authors:  Manman Lu; Mingzhang Wang; Ivan V Sergeyev; Caitlin M Quinn; Jochem Struppe; Melanie Rosay; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2019-04-01       Impact factor: 15.419

5.  Two decades of progress in structural and dynamic studies of amyloids by solid-state NMR.

Authors:  Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2019-07-09       Impact factor: 2.229

6.  Conformational Changes in Ff Phage Protein gVp upon Complexation with Its Viral Single-Stranded DNA Revealed Using Magic-Angle Spinning Solid-State NMR.

Authors:  Smadar Kedem; Roni Rene Hassid; Yoav Shamir; Amir Goldbourt
Journal:  Viruses       Date:  2022-06-10       Impact factor: 5.818

7.  Constant-time 2D and 3D through-bond correlation NMR spectroscopy of solids under 60 kHz MAS.

Authors:  Rongchun Zhang; Ayyalusamy Ramamoorthy
Journal:  J Chem Phys       Date:  2016-01-21       Impact factor: 3.488

8.  Afterglow Solid-State NMR Spectroscopy.

Authors:  Gili Abramov; Nathaniel J Traaseth
Journal:  Methods Mol Biol       Date:  2018

9.  Dynamic regulation of HIV-1 capsid interaction with the restriction factor TRIM5α identified by magic-angle spinning NMR and molecular dynamics simulations.

Authors:  Caitlin M Quinn; Mingzhang Wang; Matthew P Fritz; Brent Runge; Jinwoo Ahn; Chaoyi Xu; Juan R Perilla; Angela M Gronenborn; Tatyana Polenova
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-17       Impact factor: 11.205

10.  Fast Magic-Angle Spinning 19 F NMR Spectroscopy of HIV-1 Capsid Protein Assemblies.

Authors:  Mingzhang Wang; Manman Lu; Matthew P Fritz; Caitlin M Quinn; In-Ja L Byeon; Chang-Hyeock Byeon; Jochem Struppe; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  Angew Chem Int Ed Engl       Date:  2018-10-19       Impact factor: 15.336

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