Literature DB >> 24656081

Perspectives in magnetic resonance: NMR in the post-FFT era.

Sven G Hyberts1, Haribabu Arthanari1, Scott A Robson1, Gerhard Wagner2.   

Abstract

Multi-dimensional NMR spectra have traditionally been processed with the fast Fourier transformation (FFT). The availability of high field instruments, the complexity of spectra of large proteins, the narrow signal dispersion of some unstructured proteins, and the time needed to record the necessary increments in the indirect dimensions to exploit the resolution of the highfield instruments make this traditional approach unsatisfactory. New procedures need to be developed beyond uniform sampling of the indirect dimensions and reconstruction methods other than the straight FFT are necessary. Here we discuss approaches of non-uniform sampling (NUS) and suitable reconstruction methods. We expect that such methods will become standard for multi-dimensional NMR data acquisition with complex biological macromolecules and will dramatically enhance the power of modern biological NMR.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Iterative soft threshold reconstruction; Maximum entropy reconstruction; Non-uniform sampling; Protein backbone chemical shift assignments; Reduced time multidimensional NMR spectroscopy

Mesh:

Year:  2014        PMID: 24656081      PMCID: PMC3964371          DOI: 10.1016/j.jmr.2013.11.014

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  37 in total

1.  The multidimensional filter diagonalization method.

Authors:  H Hu; A A De Angelis; V A Mandelshtam; A J Shaka
Journal:  J Magn Reson       Date:  2000-06       Impact factor: 2.229

2.  Accelerated acquisition of high resolution triple-resonance spectra using non-uniform sampling and maximum entropy reconstruction.

Authors:  David Rovnyak; Dominique P Frueh; Mallika Sastry; Zhen-Yu J Sun; Alan S Stern; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Magn Reson       Date:  2004-09       Impact factor: 2.229

3.  Non-uniform frequency domain for optimal exploitation of non-uniform sampling.

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Review 4.  An introduction to biological nuclear magnetic resonance spectroscopy.

Authors:  John H F Bothwell; Julian L Griffin
Journal:  Biol Rev Camb Philos Soc       Date:  2010-10-24

5.  Fast two-dimensional NMR spectroscopy of high molecular weight protein assemblies.

Authors:  Carlos Amero; Paul Schanda; M Asunción Durá; Isabel Ayala; Dominique Marion; Bruno Franzetti; Bernhard Brutscher; Jérôme Boisbouvier
Journal:  J Am Chem Soc       Date:  2009-03-18       Impact factor: 15.419

6.  Sensitivity enhancement for maximally resolved two-dimensional NMR by nonuniform sampling.

Authors:  David Rovnyak; Mark Sarcone; Ze Jiang
Journal:  Magn Reson Chem       Date:  2011-07-12       Impact factor: 2.447

7.  Analysis of non-uniformly sampled spectra with multi-dimensional decomposition.

Authors:  Vladislav Yu Orekhov; Victor A Jaravine
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2011-02-24       Impact factor: 9.795

8.  Exploring signal-to-noise ratio and sensitivity in non-uniformly sampled multi-dimensional NMR spectra.

Authors:  Sven G Hyberts; Scott A Robson; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2012-12-29       Impact factor: 2.835

Review 9.  Applications of non-uniform sampling and processing.

Authors:  Sven G Hyberts; Haribabu Arthanari; Gerhard Wagner
Journal:  Top Curr Chem       Date:  2012

10.  Poisson-gap sampling and forward maximum entropy reconstruction for enhancing the resolution and sensitivity of protein NMR data.

Authors:  Sven G Hyberts; Koh Takeuchi; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2010-02-24       Impact factor: 15.419

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  53 in total

1.  HN-NCA heteronuclear TOCSY-NH experiment for (1)H(N) and (15)N sequential correlations in ((13)C, (15)N) labelled intrinsically disordered proteins.

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Journal:  J Biomol NMR       Date:  2015-08-18       Impact factor: 2.835

2.  Accurate determination of rates from non-uniformly sampled relaxation data.

Authors:  Matthew A Stetz; A Joshua Wand
Journal:  J Biomol NMR       Date:  2016-07-08       Impact factor: 2.835

3.  Structural characterization of the Asf1-Rtt109 interaction and its role in histone acetylation.

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Journal:  Nucleic Acids Res       Date:  2018-03-16       Impact factor: 16.971

4.  Accurate scoring of non-uniform sampling schemes for quantitative NMR.

Authors:  Phillip C Aoto; R Bryn Fenwick; Gerard J A Kroon; Peter E Wright
Journal:  J Magn Reson       Date:  2014-07-02       Impact factor: 2.229

5.  Fast multi-dimensional NMR acquisition and processing using the sparse FFT.

Authors:  Haitham Hassanieh; Maxim Mayzel; Lixin Shi; Dina Katabi; Vladislav Yu Orekhov
Journal:  J Biomol NMR       Date:  2015-06-30       Impact factor: 2.835

6.  Importance of time-ordered non-uniform sampling of multi-dimensional NMR spectra of Aβ1-42 peptide under aggregating conditions.

Authors:  Jinfa Ying; C Ashley Barnes; John M Louis; Ad Bax
Journal:  J Biomol NMR       Date:  2019-08-12       Impact factor: 2.835

7.  Non-Uniform Sampling in NMR Spectroscopy and the Preservation of Spectral Knowledge in the Time and Frequency Domains.

Authors:  Manpreet Kaur; Callie M Lewis; Aaron Chronister; Gabriel S Phun; Leonard J Mueller
Journal:  J Phys Chem A       Date:  2020-06-18       Impact factor: 2.781

8.  Multiple acquisition/multiple observation separated local field/chemical shift correlation solid-state magic angle spinning NMR spectroscopy.

Authors:  Bibhuti B Das; Stanley J Opella
Journal:  J Magn Reson       Date:  2014-06-28       Impact factor: 2.229

9.  Analysis of DNA binding by human factor xeroderma pigmentosum complementation group A (XPA) provides insight into its interactions with nucleotide excision repair substrates.

Authors:  Norie Sugitani; Markus W Voehler; Michelle S Roh; Agnieszka M Topolska-Woś; Walter J Chazin
Journal:  J Biol Chem       Date:  2017-08-31       Impact factor: 5.157

Review 10.  Magic angle spinning NMR of viruses.

Authors:  Caitlin M Quinn; Manman Lu; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-02-16       Impact factor: 9.795

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