Literature DB >> 23094591

A time-saving strategy for MAS NMR spectroscopy by combining nonuniform sampling and paramagnetic relaxation assisted condensed data collection.

Shangjin Sun1, Si Yan, Changmiao Guo, Mingyue Li, Jeffrey C Hoch, John C Williams, Tatyana Polenova.   

Abstract

We present a time-saving strategy for acquiring 3D magic angle spinning NMR spectra for chemical shift assignments in proteins and protein assemblies in the solid state. By simultaneous application of nonuniform sampling (NUS) and paramagnetic-relaxation-assisted condensed data collection (PACC), we can attain 16-fold time reduction in the 3D experiments without sacrificing the signal-to-noise ratio or the resolution. We demonstrate that with appropriate concentration of paramagnetic dopant introduced into the sample the overwhelming majority of chemical shifts are not perturbed, with the exception of a limited number of shifts corresponding to residues located at the surface of the protein, which exhibit small perturbations. This approach enables multidimensional MAS spectroscopy in samples of intrinsically low sensitivity and/or high spectral congestion where traditional experiments fail, and is especially beneficial for structural and dynamics studies of large proteins and protein assemblies.

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Year:  2012        PMID: 23094591      PMCID: PMC3508383          DOI: 10.1021/jp3005794

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  69 in total

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Authors:  J C Hoch; A S Stern
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

2.  Rapid acquisition of multidimensional solid-state NMR spectra of proteins facilitated by covalently bound paramagnetic tags.

Authors:  Philippe S Nadaud; Jonathan J Helmus; Ishita Sengupta; Christopher P Jaroniec
Journal:  J Am Chem Soc       Date:  2010-07-21       Impact factor: 15.419

3.  Magic angle spinning solid-state NMR spectroscopy for structural studies of protein interfaces. resonance assignments of differentially enriched Escherichia coli thioredoxin reassembled by fragment complementation.

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Journal:  J Am Chem Soc       Date:  2004-12-22       Impact factor: 15.419

4.  Proton assisted insensitive nuclei cross polarization.

Authors:  Józef R Lewandowski; Gaël De Paëpe; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2007-01-31       Impact factor: 15.419

5.  Solid-state and solution NMR studies of the CAP-Gly domain of mammalian dynactin and its interaction with microtubules.

Authors:  Shangjin Sun; Amanda Siglin; John C Williams; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2009-07-29       Impact factor: 15.419

6.  Broad-band homo-nuclear correlations assisted by 1H irradiation for bio-molecules in very high magnetic field at fast and ultra-fast MAS frequencies.

Authors:  Bingwen Hu; Oliver Lafon; Julien Trébosc; Qun Chen; Jean-Paul Amoureux
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7.  Compressed sensing and the reconstruction of ultrafast 2D NMR data: Principles and biomolecular applications.

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8.  Efficient low-power heteronuclear decoupling in 13C high-resolution solid-state NMR under fast magic angle spinning.

Authors:  Mrignayani Kotecha; Nalinda P Wickramasinghe; Yoshitaka Ishii
Journal:  Magn Reson Chem       Date:  2007-12       Impact factor: 2.447

9.  1H, 13C, and 15N NMR backbone assignments and secondary structure of human interferon-gamma.

Authors:  S Grzesiek; H Döbeli; R Gentz; G Garotta; A M Labhardt; A Bax
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10.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

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  20 in total

1.  Sensitivity gains, linearity, and spectral reproducibility in nonuniformly sampled multidimensional MAS NMR spectra of high dynamic range.

Authors:  Christopher L Suiter; Sivakumar Paramasivam; Guangjin Hou; Shangjin Sun; David Rice; Jeffrey C Hoch; David Rovnyak; Tatyana Polenova
Journal:  J Biomol NMR       Date:  2014-04-22       Impact factor: 2.835

2.  Towards automatic protein backbone assignment using proton-detected 4D solid-state NMR data.

Authors:  ShengQi Xiang; Veniamin Chevelkov; Stefan Becker; Adam Lange
Journal:  J Biomol NMR       Date:  2014-09-06       Impact factor: 2.835

3.  Application of paramagnetic relaxation enhancements to accelerate the acquisition of 2D and 3D solid-state NMR spectra of oriented membrane proteins.

Authors:  Songlin Wang; T Gopinath; Gianluigi Veglia
Journal:  Methods       Date:  2017-12-22       Impact factor: 3.608

Review 4.  New NMR tools for protein structure and function: Spin tags for dynamic nuclear polarization solid state NMR.

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Journal:  Arch Biochem Biophys       Date:  2017-06-13       Impact factor: 4.013

5.  Fast magic angle spinning NMR with heteronucleus detection for resonance assignments and structural characterization of fully protonated proteins.

Authors:  Changmiao Guo; Guangjin Hou; Xingyu Lu; Bernie O'Hare; Jochem Struppe; Tatyana Polenova
Journal:  J Biomol NMR       Date:  2014-11-09       Impact factor: 2.835

6.  Gd3+-chelated lipid accelerates solid-state NMR spectroscopy of seven-transmembrane proteins.

Authors:  Chang Liu; Jing Liu; Xiaojun Xu; ShengQi Xiang; Shenlin Wang
Journal:  J Biomol NMR       Date:  2017-05-30       Impact factor: 2.835

Review 7.  Magic angle spinning NMR of viruses.

Authors:  Caitlin M Quinn; Manman Lu; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-02-16       Impact factor: 9.795

8.  Improving dipolar recoupling for site-specific structural and dynamics studies in biosolids NMR: windowed RN-symmetry sequences.

Authors:  Xingyu Lu; Huilan Zhang; Manman Lu; Alexander J Vega; Guangjin Hou; Tatyana Polenova
Journal:  Phys Chem Chem Phys       Date:  2016-01-18       Impact factor: 3.676

9.  Experimental Protein Structure Verification by Scoring with a Single, Unassigned NMR Spectrum.

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Journal:  Structure       Date:  2015-09-10       Impact factor: 5.006

Review 10.  Probing structure and dynamics of protein assemblies by magic angle spinning NMR spectroscopy.

Authors:  Si Yan; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Acc Chem Res       Date:  2013-02-13       Impact factor: 22.384

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