Literature DB >> 1841696

A relational database for sequence-specific protein NMR data.

B R Seavey1, E A Farr, W M Westler, J L Markley.   

Abstract

A protein NMR database has been designed and is being implemented. The database is intended to contain solution NMR results from proteins and peptides (larger than 12 residues). A relational database format has been chosen that indexes data by: primary journal citation, molecular species, sequence-related and atom-specific assignments, and experimental conditions. At present, all data are entered from the primary refereed literature. Examples are given of sample queries to the database. Possible distribution formats are discussed.

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Year:  1991        PMID： 1841696     DOI： 10.1007/BF01875516

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN： 0925-2738            Impact factor:   2.835


  13 in total

Review 1.  Two-dimensional nuclear magnetic resonance spectroscopy of proteins: an overview.

Authors:  J L Markley
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

2.  A relational database for sequence-specific protein NMR data.

Authors:  B R Seavey; E A Farr; W M Westler; J L Markley
Journal:  J Biomol NMR       Date:  1991-09       Impact factor: 2.835

3.  Reportig biological structures.

Authors:  O Jardetzky
Journal:  Science       Date:  1989-10-27       Impact factor: 47.728

4.  IUPAC-IUB commission on biochemical nomenclature (CBN). Nomenclature of iron-sulfur proteins. 1973 recommendations.

Authors: 
Journal:  Eur J Biochem       Date:  1973-05

5.  IUPAC-IUB Commission on Biochemical Nomenclature. Abbreviations and symbols for the description of the conformation of polypeptide chains. Tentative rules (1969).

Authors: 
Journal:  Biochemistry       Date:  1970-09-01       Impact factor: 3.162

6.  Creation of a nuclear magnetic resonance data repository and literature database.

Authors:  E L Ulrich; J L Markley; Y Kyogoku
Journal:  Protein Seq Data Anal       Date:  1989

7.  Heteronuclear three-dimensional NMR spectroscopy of the inflammatory protein C5a.

Authors:  E R Zuiderweg; S W Fesik
Journal:  Biochemistry       Date:  1989-03-21       Impact factor: 3.162

8.  Assignment of proton resonances, identification of secondary structural elements, and analysis of backbone chemical shifts for the C102T variant of yeast iso-1-cytochrome c and horse cytochrome c.

Authors:  Y Gao; J Boyd; R J Williams; G J Pielak
Journal:  Biochemistry       Date:  1990-07-31       Impact factor: 3.162

9.  A novel approach for sequential assignment of 1H, 13C, and 15N spectra of proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin.

Authors:  M Ikura; L E Kay; A Bax
Journal:  Biochemistry       Date:  1990-05-15       Impact factor: 3.162

10.  Four-dimensional heteronuclear triple-resonance NMR spectroscopy of interleukin-1 beta in solution.

Authors:  L E Kay; G M Clore; A Bax; A M Gronenborn
Journal:  Science       Date:  1990-07-27       Impact factor: 47.728
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  136 in total

1.  The RESID Database of protein structure modifications and the NRL-3D Sequence-Structure Database.

Authors:  J S Garavelli; Z Hou; N Pattabiraman; R M Stephens
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  RESCUE: an artificial neural network tool for the NMR spectral assignment of proteins.

Authors:  J L Pons; M A Delsuc
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

3.  Structure prediction of protein complexes by an NMR-based protein docking algorithm.

Authors:  O Kohlbache; A Burchardt; A Moll; A Hildebrandt; P Bayer; H P Lenhof
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

4.  Enhanced protein fold recognition using secondary structure information from NMR.

Authors:  D J Ayers; P R Gooley; A Widmer-Cooper; A E Torda
Journal:  Protein Sci       Date:  1999-05       Impact factor: 6.725

5.  Smartnotebook: a semi-automated approach to protein sequential NMR resonance assignments.

Authors:  Carolyn M Slupsky; Robert F Boyko; Valerie K Booth; Brian D Sykes
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

6.  Protein sequential resonance assignments by combinatorial enumeration using 13C alpha chemical shifts and their (i, i-1) sequential connectivities.

Authors:  Michael Andrec; Ronald M Levy
Journal:  J Biomol NMR       Date:  2002-08       Impact factor: 2.835

7.  RefDB: a database of uniformly referenced protein chemical shifts.

Authors:  Haiyan Zhang; Stephen Neal; David S Wishart
Journal:  J Biomol NMR       Date:  2003-03       Impact factor: 2.835

8.  Automated protein fold determination using a minimal NMR constraint strategy.

Authors:  Deyou Zheng; Yuanpeng J Huang; Hunter N B Moseley; Rong Xiao; James Aramini; G V T Swapna; Gaetano T Montelione
Journal:  Protein Sci       Date:  2003-06       Impact factor: 6.725

9.  Structure of the analgesic mu-conotoxin KIIIA and effects on the structure and function of disulfide deletion.

Authors:  Keith K Khoo; Zhi-Ping Feng; Brian J Smith; Min-Min Zhang; Doju Yoshikami; Baldomero M Olivera; Grzegorz Bulaj; Raymond S Norton
Journal:  Biochemistry       Date:  2009-02-17       Impact factor: 3.162

10.  Solid state NMR sequential resonance assignments and conformational analysis of the 2x10.4 kDa dimeric form of the Bacillus subtilis protein Crh.

Authors:  Anja Böckmann; Adam Lange; Anne Galinier; Sorin Luca; Nicolas Giraud; Michel Juy; Henrike Heise; Roland Montserret; François Penin; Marc Baldus
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835
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