Literature DB >> 11430755

MUNIN: a new approach to multi-dimensional NMR spectra interpretation.

V Y Orekhov1, I V Ibraghimov, M Billeter.   

Abstract

A new method, MUNIN (Multi-dimensional NMR spectra interpretation), is introduced for the automated interpretation of three-dimensional NMR spectra. It is based on a mathematical concept referred to as three-way decomposition. An NMR spectrum is decomposed into a sum of components, with each component corresponding to one or a group of peaks. Each component is defined as the direct product of three one-dimensional shapes. A consequence is reduction in dimensionality of the spectral data used in further analysis. The decomposition may be applied to frequency-domain or time-domain data, or to a mixture of these. Features of MUNIN include good resolution in crowded regions and the absence of assumptions about line shapes. Uniform sampling of time-domain data, a prerequisite for discrete Fourier transform, is not required. This opens an avenue for the processing of NMR data that do not follow oscillating behaviour, e.g. from relaxation measurements. The application of MUNIN is illustrated for a 1H-15N-NOESY-HSQC, where each component is defined as the set of all NOE peaks formed by a given amide group. As a result, the extraction of structural information simply consists of one-dimensional peak picking of the shape along the NOE-axis obtained for each amide group.

Entities:  

Mesh:

Year:  2001        PMID: 11430755     DOI: 10.1023/a:1011234126930

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  11 in total

1.  The multidimensional filter diagonalization method.

Authors:  H Hu; A A De Angelis; V A Mandelshtam; A J Shaka
Journal:  J Magn Reson       Date:  2000-06       Impact factor: 2.229

2.  A new method for spectral decomposition using a bilinear Bayesian approach.

Authors:  M F Ochs; R S Stoyanova; F Arias-Mendoza; T R Brown
Journal:  J Magn Reson       Date:  1999-03       Impact factor: 2.229

3.  Wavelet-encoded MR imaging.

Authors:  J B Weaver; Y Xu; D M Healy; J R Driscoll
Journal:  Magn Reson Med       Date:  1992-04       Impact factor: 4.668

4.  Automated peak picking and peak integration in macromolecular NMR spectra using AUTOPSY.

Authors:  R Koradi; M Billeter; M Engeli; P Güntert; K Wüthrich
Journal:  J Magn Reson       Date:  1998-12       Impact factor: 2.229

5.  Quantification of maximum-entropy spectrum reconstructions.

Authors:  P Schmieder; A S Stern; G Wagner; J C Hoch
Journal:  J Magn Reson       Date:  1997-04       Impact factor: 2.229

6.  Bayesian signal extraction from noisy FT NMR spectra.

Authors:  A Rouh; A Louis-Joseph; J Y Lallemand
Journal:  J Biomol NMR       Date:  1994-07       Impact factor: 2.835

7.  Some mathematical notes on three-mode factor analysis.

Authors:  L R Tucker
Journal:  Psychometrika       Date:  1966-09       Impact factor: 2.500

8.  Theory and application of the maximum likelihood principle to NMR parameter estimation of multidimensional NMR data.

Authors:  R A Chylla; J L Markley
Journal:  J Biomol NMR       Date:  1995-04       Impact factor: 2.835

9.  Expression of the blue copper protein azurin from Pseudomonas aeruginosa in Escherichia coli.

Authors:  B G Karlsson; T Pascher; M Nordling; R H Arvidsson; L G Lundberg
Journal:  FEBS Lett       Date:  1989-03-27       Impact factor: 4.124

10.  Backbone 1H and 15N resonance assignments of the N-terminal SH3 domain of drk in folded and unfolded states using enhanced-sensitivity pulsed field gradient NMR techniques.

Authors:  O Zhang; L E Kay; J P Olivier; J D Forman-Kay
Journal:  J Biomol NMR       Date:  1994-11       Impact factor: 2.835

View more
  64 in total

1.  MUNIN: application of three-way decomposition to the analysis of heteronuclear NMR relaxation data.

Authors:  D M Korzhneva; I V Ibraghimov; M Billeter; V Y Orekhov
Journal:  J Biomol NMR       Date:  2001-11       Impact factor: 2.835

Review 2.  Radial sampling for fast NMR: Concepts and practices over three decades.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-07-30       Impact factor: 9.795

3.  Non-uniformly sampled double-TROSY hNcaNH experiments for NMR sequential assignments of large proteins.

Authors:  Dominique P Frueh; Zhen-Yu J Sun; David A Vosburg; Christopher T Walsh; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2006-05-03       Impact factor: 15.419

4.  Off-resonance R1rho relaxation outside of the fast exchange limit: an experimental study of a cavity mutant of T4 lysozyme.

Authors:  Dmitry M Korzhnev; Vladislav Yu Orekhov; Frederick W Dahlquist; Lewis E Kay
Journal:  J Biomol NMR       Date:  2003-05       Impact factor: 2.835

5.  Optimizing resolution in multidimensional NMR by three-way decomposition.

Authors:  Vladislav Yu Orekhov; Ilghiz Ibraghimov; Martin Billeter
Journal:  J Biomol NMR       Date:  2003-10       Impact factor: 2.835

6.  NMR detection of multiple transitions to low-populated states in azurin.

Authors:  Dmitry M Korzhnev; B Göran Karlsson; Vladislav Yu Orekhov; Martin Billeter
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

7.  Automated evaluation of chemical shift perturbation spectra: New approaches to quantitative analysis of receptor-ligand interaction NMR spectra.

Authors:  Chen Peng; Stephen W Unger; Fabian V Filipp; Michael Sattler; Sándor Szalma
Journal:  J Biomol NMR       Date:  2004-08       Impact factor: 2.835

Review 8.  Resolution and sensitivity of high field nuclear magnetic resonance spectroscopy.

Authors:  D Rovnyak; J C Hoch; A S Stern; G Wagner
Journal:  J Biomol NMR       Date:  2004-09       Impact factor: 2.835

9.  Advances in Nuclear Magnetic Resonance for Drug Discovery.

Authors:  Robert Powers
Journal:  Expert Opin Drug Discov       Date:  2009-10-01       Impact factor: 6.098

10.  High resolution 4-D spectroscopy with sparse concentric shell sampling and FFT-CLEAN.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Biomol NMR       Date:  2008-10-14       Impact factor: 2.835

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.