Literature DB >> 20859778

Gifa V. 4: A complete package for NMR data set processing.

J L Pons1, T E Malliavin, M A Delsuc.   

Abstract

The Gifa program is designed for processing, displaying and analysing 1D, 2D and 3D NMR data sets. It has been constructed in a modular fashion, based on three independent modules: a set of commands that perform all the basic processing operations such as apodisation functions, a complete set of Fourier Transforms, phasing and baseline correction, peak-picking and line fitting, linear prediction and maximum entropy processing; a set of command language primitives that permit the execution of complex macro commands; and a set of graphic commands that permit to build a complete graphic user interface, allowing the user to interact easily with the program. We have tried to create a versatile program that can be easily extended according to the user's requirements and that is adapted to a novice as well as an experienced user. The program runs on any UNIX computer, with or without graphic display, in interactive or batch mode.

Year:  1996        PMID: 20859778     DOI: 10.1007/BF00228146

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  4 in total

1.  Accurate estimation of inter-atomic distances in large proteins by NMR.

Authors:  C Reisdorf; T E Malliavin; M A Delsuc
Journal:  Biochimie       Date:  1992 Sep-Oct       Impact factor: 4.079

2.  Use of the Cadzow procedure in 2D NMR for the reduction of t(1) noise.

Authors:  C Brissac; T E Malliavin; M A Delsuc
Journal:  J Biomol NMR       Date:  1995-12       Impact factor: 2.835

3.  NMR View: A computer program for the visualization and analysis of NMR data.

Authors:  B A Johnson; R A Blevins
Journal:  J Biomol NMR       Date:  1994-09       Impact factor: 2.835

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

  4 in total
  53 in total

1.  A recurrent RNA-binding domain is appended to eukaryotic aminoacyl-tRNA synthetases.

Authors:  B Cahuzac; E Berthonneau; N Birlirakis; E Guittet; M Mirande
Journal:  EMBO J       Date:  2000-02-01       Impact factor: 11.598

2.  RESCUE: an artificial neural network tool for the NMR spectral assignment of proteins.

Authors:  J L Pons; M A Delsuc
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

3.  15N NMR relaxation as a probe for helical intrinsic propensity: the case of the unfolded D2 domain of annexin I.

Authors:  F Ochsenbein; R Guerois; J M Neumann; A Sanson; E Guittet; C van Heijenoort
Journal:  J Biomol NMR       Date:  2001-01       Impact factor: 2.835

4.  Solution structure of conserved AGNN tetraloops: insights into Rnt1p RNA processing.

Authors:  I Lebars; B Lamontagne; S Yoshizawa; S Aboul-Elela; D Fourmy
Journal:  EMBO J       Date:  2001-12-17       Impact factor: 11.598

5.  Structure refinement of flexible proteins using dipolar couplings: application to the protein p8MTCP1.

Authors:  Hélène Déméné; Thierry Ducat; Philippe Barthe; Marc-André Delsuc; Christian Roumestand
Journal:  J Biomol NMR       Date:  2002-01       Impact factor: 2.835

6.  Solution structure of the LicT-RNA antitermination complex: CAT clamping RAT.

Authors:  Yinshan Yang; Nathalie Declerck; Xavier Manival; Stéphane Aymerich; Michel Kochoyan
Journal:  EMBO J       Date:  2002-04-15       Impact factor: 11.598

7.  NMR characterization of a kissing complex formed between the TAR RNA element of HIV-1 and a DNA aptamer.

Authors:  D Collin; C van Heijenoort; C Boiziau; J J Toulmé; E Guittet
Journal:  Nucleic Acids Res       Date:  2000-09-01       Impact factor: 16.971

8.  Backbone H(N), N, C(alpha), C', and C(beta) assignment of the 6-phosphogluconolactonase, a 266-residue enzyme of the pentose-phosphate pathway from human parasite Trypanosoma brucei.

Authors:  Emeric Miclet; Francis Duffieux; Jean-Yves Lallemand; Véronique Stoven
Journal:  J Biomol NMR       Date:  2003-03       Impact factor: 2.835

9.  Structural basis of ligand recognition by PABC, a highly specific peptide-binding domain found in poly(A)-binding protein and a HECT ubiquitin ligase.

Authors:  Guennadi Kozlov; Gregory De Crescenzo; Nadia S Lim; Nadeem Siddiqui; Daniel Fantus; Avak Kahvejian; Jean-François Trempe; Demetra Elias; Irena Ekiel; Nahum Sonenberg; Maureen O'Connor-McCourt; Kalle Gehring
Journal:  EMBO J       Date:  2003-12-18       Impact factor: 11.598

10.  1H, 15N and 13C chemical shift assignments of the Pleckstrin Homology domain of the Human Protein Kinase B (PKB/Akt).

Authors:  Daniel Auguin; Philippe Barthe; Marie-Thérèse Augé-Sénégas; François Hoh; Masayuki Noguchi; Christian Roumestand
Journal:  J Biomol NMR       Date:  2003-11       Impact factor: 2.835

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.