Literature DB >> 26497830

Nitrogen detected TROSY at high field yields high resolution and sensitivity for protein NMR.

Koh Takeuchi1,2, Haribabu Arthanari3, Ichio Shimada4,5, Gerhard Wagner6.   

Abstract

Detection of (15)N in multidimensional NMR experiments of proteins has sparsely been utilized because of the low gyromagnetic ratio (γ) of nitrogen and the presumed low sensitivity of such experiments. Here we show that selecting the TROSY components of proton-attached (15)N nuclei (TROSY (15)NH) yields high quality spectra in high field magnets (>600 MHz) by taking advantage of the slow (15)N transverse relaxation and compensating for the inherently low (15)N sensitivity. The (15)N TROSY transverse relaxation rates increase modestly with molecular weight but the TROSY gain in peak heights depends strongly on the magnetic field strength. Theoretical simulations predict that the narrowest line width for the TROSY (15)NH component can be obtained at 900 MHz, but sensitivity reaches its maximum around 1.2 GHz. Based on these considerations, a (15)N-detected 2D (1)H-(15)N TROSY-HSQC ((15)N-detected TROSY-HSQC) experiment was developed and high-quality 2D spectra were recorded at 800 MHz in 2 h for 1 mM maltose-binding protein at 278 K (τc ~ 40 ns). Unlike for (1)H detected TROSY, deuteration is not mandatory to benefit (15)N detected TROSY due to reduced dipolar broadening, which facilitates studies of proteins that cannot be deuterated, especially in cases where production requires eukaryotic expression systems. The option of recording (15)N TROSY of proteins expressed in H2O media also alleviates the problem of incomplete amide proton back exchange, which often hampers the detection of amide groups in the core of large molecular weight proteins that are expressed in D2O culture media and cannot be refolded for amide back exchange. These results illustrate the potential of (15)NH-detected TROSY experiments as a means to exploit the high resolution offered by high field magnets near and above 1 GHz.

Entities:  

Keywords:  Amide back exchange; Deuteration; High field magnet; Nitrogen detection; Protein NMR; TROSY

Mesh:

Substances:

Year:  2015        PMID: 26497830      PMCID: PMC4749451          DOI: 10.1007/s10858-015-9991-y

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  33 in total

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4.  Measurement of 15N relaxation in deuterated amide groups in proteins using direct nitrogen detection.

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5.  Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

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6.  Single Transition-to-single Transition Polarization Transfer (ST2-PT) in [15N,1H]-TROSY.

Authors:  K V Pervushin; G Wider; K Wüthrich
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7.  A strategy to obtain backbone resonance assignments of deuterated proteins in the presence of incomplete amide 2H/1H back-exchange.

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8.  Low-conductivity buffers for high-sensitivity NMR measurements.

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9.  Functional dynamics of deuterated β2 -adrenergic receptor in lipid bilayers revealed by NMR spectroscopy.

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  20 in total

1.  Taking Simultaneous Snapshots of Intrinsically Disordered Proteins in Action.

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2.  3D MAS NMR Experiment Utilizing Through-Space 15N-15N Correlations.

Authors:  Kevin J Donovan; Robert Silvers; Sara Linse; Robert G Griffin
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3.  15N detection harnesses the slow relaxation property of nitrogen: Delivering enhanced resolution for intrinsically disordered proteins.

Authors:  Sandeep Chhabra; Patrick Fischer; Koh Takeuchi; Abhinav Dubey; Joshua J Ziarek; Andras Boeszoermenyi; Daniel Mathieu; Wolfgang Bermel; Norman E Davey; Gerhard Wagner; Haribabu Arthanari
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4.  Evaluation of 15N-detected H-N correlation experiments on increasingly large RNAs.

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Journal:  J Biomol NMR       Date:  2017-09-06       Impact factor: 2.835

Review 5.  NMR techniques in studying water in biotechnological systems.

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6.  Measurement of residual dipolar couplings in methyl groups via carbon detection.

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Review 7.  Applications of NMR to membrane proteins.

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8.  Perspective: revisiting the field dependence of TROSY sensitivity.

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9.  Nitrogen-detected TROSY yields comparable sensitivity to proton-detected TROSY for non-deuterated, large proteins under physiological salt conditions.

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Review 10.  NMR of Macromolecular Assemblies and Machines at 1 GHz and Beyond: New Transformative Opportunities for Molecular Structural Biology.

Authors:  Caitlin M Quinn; Mingzhang Wang; Tatyana Polenova
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