Literature DB >> 11959992

Is the first hydration shell of lysozyme of higher density than bulk water?

Franci Merzel1, Jeremy C Smith.   

Abstract

Characterization of the physical properties of protein surface hydration water is critical for understanding protein structure and folding. Here, using molecular dynamics simulation, we provide an explanation of recent x-ray and neutron solution scattering data that indicate that the density of water on the surface of lysozyme is significantly higher than that of bulk water. The simulation-derived scattering profiles are in excellent agreement with the experiment. In the simulation, the 3-A-thick first hydration layer is 15% denser than bulk water. About two-thirds of this increase is the result of a geometric contribution that would also be present if the water was unperturbed from the bulk. The remaining third arises from modification of the water structure and dynamics, involving approximately equal contributions from shortening of the average water-water O-O distance and an increase in the coordination number. Variation in the first hydration shell density is shown to be determined by topographical and electrostatic properties of the protein surface. On average, denser water is found in depressions on the surface in which the water dipoles tend to be aligned parallel to each other by the electrostatic field generated by the protein atoms.

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Year:  2002        PMID: 11959992      PMCID: PMC122777          DOI: 10.1073/pnas.082335099

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

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Authors:  A Pertsemlidis; A M Saxena; A K Soper; T Head-Gordon; R M Glaeser
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-01       Impact factor: 11.205

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Authors:  G N Phillips; B M Pettitt
Journal:  Protein Sci       Date:  1995-02       Impact factor: 6.725

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Journal:  Biophys J       Date:  1993-10       Impact factor: 4.033

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Journal:  Prog Biophys Mol Biol       Date:  1995       Impact factor: 3.667

10.  High-resolution structure (1.33 A) of a HEW lysozyme tetragonal crystal grown in the APCF apparatus. Data and structural comparison with a crystal grown under microgravity from SpaceHab-01 mission.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-05-01
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  72 in total

1.  19 A solution structure of the filarial nematode immunomodulatory protein, ES-62.

Authors:  Giuseppe Zaccai
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

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Authors:  Bertil Halle; Monika Davidovic
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-03       Impact factor: 11.205

Review 3.  Structure, dynamics and reactions of protein hydration water.

Authors:  Jeremy C Smith; Franci Merzel; Ana-Nicoleta Bondar; Alexander Tournier; Stefan Fischer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

Review 4.  The effect of water on protein dynamics.

Authors:  G Zaccai
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

Review 5.  Protein hydration dynamics in solution: a critical survey.

Authors:  Bertil Halle
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

6.  Pressure denaturation of staphylococcal nuclease studied by neutron small-angle scattering and molecular simulation.

Authors:  Amit Paliwal; Dilipkumar Asthagiri; Dobrin P Bossev; Michael E Paulaitis
Journal:  Biophys J       Date:  2004-09-03       Impact factor: 4.033

7.  More than one dynamic crossover in protein hydration water.

Authors:  Marco G Mazza; Kevin Stokely; Sara E Pagnotta; Fabio Bruni; H Eugene Stanley; Giancarlo Franzese
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-30       Impact factor: 11.205

8.  Modeling the hydration layer around proteins: applications to small- and wide-angle x-ray scattering.

Authors:  Jouko Juhani Virtanen; Lee Makowski; Tobin R Sosnick; Karl F Freed
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

9.  Protein-ice interaction of an antifreeze protein observed with solid-state NMR.

Authors:  Ansgar B Siemer; Kuo-Ying Huang; Ann E McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-30       Impact factor: 11.205

10.  Solution properties of γ-crystallins: hydration of fish and mammal γ-crystallins.

Authors:  Huaying Zhao; Yingwei Chen; Lenka Rezabkova; Zhengrong Wu; Graeme Wistow; Peter Schuck
Journal:  Protein Sci       Date:  2013-11-27       Impact factor: 6.725

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