Literature DB >> 15299672

High-resolution structure (1.33 A) of a HEW lysozyme tetragonal crystal grown in the APCF apparatus. Data and structural comparison with a crystal grown under microgravity from SpaceHab-01 mission.

M C Vaney1, S Maignan, M Riès-Kautt, A Ducriux.   

Abstract

Crystals of tetragonal hen egg-white lysozyme were grown using Advanced Protein Crystallization Facility (APCF) apparatus under a microgravity environment (SpaceHab-01 mission) and ground control conditions. Crystals were grown from NaCl as a crystallizing agent at pH 4.3. The X-ray diffraction patterns of the best diffracting ground- and space-grown crystals were recorded using synchrotron radiation and an image plate on the W32 beamline at LURE. Both ground- and space-grown crystals showed nearly equivalent maximum resolution of 1.3-1.4 A. Refinements were carried out with the program X-PLOR with final R values of 18.45 and 18.27% for structures from ground- and space- grown crystals, respectively. The two structures are nearly identical with the root-mean-square difference on all protein atoms being 0.13 A. Some residues of the two refined structures show multiple alternative conformations. Two ions were localized into the electron-density maps of the two structures: one chloride ion at the interface between two symmetry-related molecules and one sodium ion stabilizing the loop Ser60-Leu75. The sodium ion is surrounded by six ligands which form a bipyramid around it at distances of 2.2-2.6 A.

Entities:  

Year:  1996        PMID: 15299672     DOI: 10.1107/S090744499501674X

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  59 in total

1.  Is the first hydration shell of lysozyme of higher density than bulk water?

Authors:  Franci Merzel; Jeremy C Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

2.  A refined solution structure of hen lysozyme determined using residual dipolar coupling data.

Authors:  H Schwalbe; S B Grimshaw; A Spencer; M Buck; J Boyd; C M Dobson; C Redfield; L J Smith
Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

3.  Lysozyme contamination facilitates crystallization of a heterotrimeric cortactin-Arg-lysozyme complex.

Authors:  Weizhi Liu; Stacey M MacGrath; Anthony J Koleske; Titus J Boggon
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-01-25

4.  Fast high-pressure freezing of protein crystals in their mother liquor.

Authors:  Anja Burkhardt; Martin Warmer; Saravanan Panneerselvam; Armin Wagner; Athina Zouni; Carina Glöckner; Rudolph Reimer; Heinrich Hohenberg; Alke Meents
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-03-31

5.  On the calculation of ³Jαβ-coupling constants for side chains in proteins.

Authors:  Denise Steiner; Jane R Allison; Andreas P Eichenberger; Wilfred F van Gunsteren
Journal:  J Biomol NMR       Date:  2012-06-20       Impact factor: 2.835

6.  Amino acids and glycine ethyl ester as new crystallization reagents for lysozyme.

Authors:  Len Ito; Kentaro Shiraki; Hiroshi Yamaguchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-05-27

7.  Consistent picture of the reversible thermal unfolding of hen egg-white lysozyme from experiment and molecular dynamics.

Authors:  Filip Meersman; Canan Atilgan; Andrew J Miles; Reto Bader; Weifeng Shang; André Matagne; B A Wallace; Michel H J Koch
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

8.  Residual dipolar couplings: are multiple independent alignments always possible?

Authors:  Victoria A Higman; Jonathan Boyd; Lorna J Smith; Christina Redfield
Journal:  J Biomol NMR       Date:  2010-12-24       Impact factor: 2.835

9.  Asparagine and glutamine side-chain conformation in solution and crystal: a comparison for hen egg-white lysozyme using residual dipolar couplings.

Authors:  Victoria A Higman; Jonathan Boyd; Lorna J Smith; Christina Redfield
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

10.  Engineering Escherichia coli for soluble expression and single step purification of active human lysozyme.

Authors:  John W Lamppa; Sam A Tanyos; Karl E Griswold
Journal:  J Biotechnol       Date:  2012-12-07       Impact factor: 3.307

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