Literature DB >> 15306375

Structure, dynamics and reactions of protein hydration water.

Jeremy C Smith1, Franci Merzel, Ana-Nicoleta Bondar, Alexander Tournier, Stefan Fischer.   

Abstract

The apparent simplicity of the water molecule belies the wide range of fascinating protein phenomena in which it participates. We review recent computer simulation work on buried, internal water molecules, discussing the thermodynamics of water molecule binding and the participation of water in proton transfer reactions. Surface water molecules are also considered, with emphasis on the modification of average solvent structure on a protein surface, the role of water in the protein dynamical 'glass' transition and a simplified description of the protein motions thereby activated.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15306375      PMCID: PMC1693407          DOI: 10.1098/rstb.2004.1497

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  62 in total

1.  Is the first hydration shell of lysozyme of higher density than bulk water?

Authors:  Franci Merzel; Jeremy C Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

2.  Microscopic origins of entropy, heat capacity and the glass transition in proteins.

Authors:  A L Lee; A J Wand
Journal:  Nature       Date:  2001-05-24       Impact factor: 49.962

3.  Effect of the environment on the protein dynamical transition: a neutron scattering study.

Authors:  Alessandro Paciaroni; Stefania Cinelli; Giuseppe Onori
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

4.  Dynamic instability of liquidlike motions in a globular protein observed by inelastic neutron scattering.

Authors: 
Journal:  Phys Rev Lett       Date:  1990-08-20       Impact factor: 9.161

5.  Hydration of proteins. A comparison of experimental residence times of water molecules solvating the bovine pancreatic trypsin inhibitor with theoretical model calculations.

Authors:  R M Brunne; E Liepinsh; G Otting; K Wüthrich; W F van Gunsteren
Journal:  J Mol Biol       Date:  1993-06-20       Impact factor: 5.469

6.  Enzyme activity below the dynamical transition at 220 K.

Authors:  R M Daniel; J C Smith; M Ferrand; S Héry; R Dunn; J L Finney
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

7.  Thermodynamic stability of water molecules in the bacteriorhodopsin proton channel: a molecular dynamics free energy perturbation study.

Authors:  B Roux; M Nina; R Pomès; J C Smith
Journal:  Biophys J       Date:  1996-08       Impact factor: 4.033

8.  Direct observation of protein solvation and discrete disorder with experimental crystallographic phases.

Authors:  F T Burling; W I Weis; K M Flaherty; A T Brünger
Journal:  Science       Date:  1996-01-05       Impact factor: 47.728

9.  Multiple hydration layers in cubic insulin crystals.

Authors:  J Badger
Journal:  Biophys J       Date:  1993-10       Impact factor: 4.033

10.  Crystallographic structure of the K intermediate of bacteriorhodopsin: conservation of free energy after photoisomerization of the retinal.

Authors:  Brigitte Schobert; Jill Cupp-Vickery; Viktor Hornak; Steven Smith; Janos Lanyi
Journal:  J Mol Biol       Date:  2002-08-23       Impact factor: 5.469

View more
  13 in total

1.  Amino acid compositional shifts during streptophyte transitions to terrestrial habitats.

Authors:  Richard W Jobson; Yin-Long Qiu
Journal:  J Mol Evol       Date:  2010-12-14       Impact factor: 2.395

Review 2.  Coping with our cold planet.

Authors:  Debora Frigi Rodrigues; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2008-01-18       Impact factor: 4.792

3.  Hemoglobin senses body temperature.

Authors:  G M Artmann; Ilya Digel; K F Zerlin; Ch Maggakis-Kelemen; Pt Linder; D Porst; P Kayser; A M Stadler; G Dikta; A Temiz Artmann
Journal:  Eur Biophys J       Date:  2009-02-24       Impact factor: 1.733

4.  Changes in protein structure and dynamics as a function of hydration from (1)H second moments.

Authors:  Galina Diakova; Yanina A Goddard; Jean-Pierre Korb; Robert G Bryant
Journal:  J Magn Reson       Date:  2007-09-15       Impact factor: 2.229

5.  Molecular processes in biological thermosensation.

Authors:  I Digel; P Kayser; G M Artmann
Journal:  J Biophys       Date:  2008-05-12

6.  Effects of surface water on protein dynamics studied by a novel coarse-grained normal mode approach.

Authors:  Lei Zhou; Steven A Siegelbaum
Journal:  Biophys J       Date:  2008-01-22       Impact factor: 4.033

7.  Origin of slow relaxation following photoexcitation of W7 in myoglobin and the dynamics of its hydration layer.

Authors:  Tanping Li; Ali A Hassanali; Sherwin J Singer
Journal:  J Phys Chem B       Date:  2008-12-18       Impact factor: 2.991

8.  SAXS/SANS on Supercharged Proteins Reveals Residue-Specific Modifications of the Hydration Shell.

Authors:  Henry S Kim; Anne Martel; Eric Girard; Martine Moulin; Michael Härtlein; Dominique Madern; Martin Blackledge; Bruno Franzetti; Frank Gabel
Journal:  Biophys J       Date:  2016-05-24       Impact factor: 4.033

Review 9.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

10.  Non-bulk-like solvent behavior in the ribosome exit tunnel.

Authors:  Del Lucent; Christopher D Snow; Colin Echeverría Aitken; Vijay S Pande
Journal:  PLoS Comput Biol       Date:  2010-10-21       Impact factor: 4.475

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.